Create an .h5mu file with data from a Seurat object — WriteH5MU • MuDataSeurat

Save Seurat object to .h5mu file. The behavior of this function if NAs are present is undefined.

Usage

WriteH5MU(object, file, overwrite = TRUE)

# S4 method for Seurat
WriteH5MU(object, file, overwrite = TRUE)

Arguments

object: Seurat object.
file: Path to the .h5mu file.
overwrite: Boolean value to indicate if to overwrite the file if it exists (TRUE by default).

Details

The following slots are saved: count matrices (`@counts`, `@scale.data` and `@data`), `@metadata`, `@reductions`, `@feature.loadings`, `@graphs`.