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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #30 | 11 | 65646176 | 65647982 | 1806 | 3 | 62 | 8.38559e-25 | 2.77982e-22 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000531339 | sg00000213445 | sipa1-207 | 11 | 65647366 | 65650479 | + | lnc_RNA | retained_intron |
| -365 | enst00000530226 | sg00000213445 | sipa1-206 | 11 | 65645811 | 65646710 | + | lnc_RNA | retained_intron |
| 1210 | enst00000578869 | sg00000265874 | mir4489-201 | 11 | 65649192 | 65649253 | + | miRNA | mirna |
| 1704 | enst00000529725 | sg00000213445 | sipa1-205 | 11 | 65649686 | 65650587 | + | lnc_RNA | retained_intron |
| 2300 | enst00000528699 | sg00000213445 | sipa1-204 | 11 | 65650282 | 65650918 | + | lnc_RNA | retained_intron |
| -4058 | enst00000534406 | sg00000213445 | sipa1-210 | 11 | 65642118 | 65642553 | + | lnc_RNA | retained_intron |
| -6055 | enst00000394224 | sg00000213445 | sipa1-201 | 11 | 65640121 | 65650918 | + | mRNA | protein_coding |
| -6310 | enst00000527525 | sg00000213445 | sipa1-203 | 11 | 65639866 | 65650880 | + | mRNA | protein_coding |
| -8024 | enst00000526137 | sg00000213445 | sipa1-202 | 11 | 65638152 | 65640940 | + | mRNA | protein_coding |
| -8040 | enst00000533361 | sg00000213445 | sipa1-208 | 11 | 65638136 | 65641229 | + | mRNA | protein_coding |
| -8075 | enst00000534313 | sg00000213445 | sipa1-209 | 11 | 65638101 | 65650912 | + | mRNA | protein_coding |
| -9866 | enst00000578459 | sg00000266041 | mir4690-201 | 11 | 65636310 | 65636369 | + | miRNA | mirna |
| 11761 | enst00000526257 | sg00000173039 | rela-207 | 11 | 65655707 | 65659743 | - | mRNA | protein_coding |
| 12180 | enst00000529330 | sg00000173039 | rela-214 | 11 | 65658769 | 65660162 | - | lnc_RNA | retained_intron |
| 12810 | enst00000526738 | sg00000173039 | rela-209 | 11 | 65658602 | 65660792 | - | lnc_RNA | retained_intron |
| 14446 | enst00000527874 | sg00000173039 | rela-212 | 11 | 65660189 | 65662428 | - | mRNA | protein_coding |
| 14798 | enst00000534283 | sg00000173039 | rela-223 | 11 | 65661943 | 65662780 | - | mRNA | protein_coding |
| 14810 | enst00000527749 | sg00000173039 | rela-211 | 11 | 65658732 | 65662792 | - | mRNA | protein_coding |
| 14811 | enst00000533187 | sg00000173039 | rela-221 | 11 | 65660172 | 65662793 | - | mRNA | protein_coding |
| 14913 | enst00000526283 | sg00000173039 | rela-208 | 11 | 65653602 | 65662895 | - | mRNA | nonsense_mediated_decay |
| 14913 | enst00000525693 | sg00000173039 | rela-205 | 11 | 65653601 | 65662895 | - | mRNA | protein_coding |
| 14915 | enst00000534305 | sg00000173039 | rela-224 | 11 | 65661511 | 65662897 | - | lnc_RNA | retained_intron |
| 14917 | enst00000534558 | sg00000173039 | rela-225 | 11 | 65658730 | 65662899 | - | mRNA | protein_coding |
| 14926 | enst00000527909 | sg00000173039 | rela-213 | 11 | 65658718 | 65662908 | - | mRNA | nonsense_mediated_decay |
| 14926 | enst00000533546 | sg00000173039 | rela-222 | 11 | 65658430 | 65662908 | - | mRNA | nonsense_mediated_decay |
| 14926 | enst00000531238 | sg00000173039 | rela-216 | 11 | 65659744 | 65662908 | - | mRNA | nonsense_mediated_decay |
| 14933 | enst00000531484 | sg00000173039 | rela-217 | 11 | 65653967 | 65662915 | - | lnc_RNA | retained_intron |
| 14933 | enst00000532879 | sg00000173039 | rela-219 | 11 | 65659682 | 65662915 | - | mRNA | protein_coding |
| 14933 | enst00000525658 | sg00000173039 | rela-204 | 11 | 65658287 | 65662915 | - | mRNA | nonsense_mediated_decay |
| 14934 | enst00000406246 | sg00000173039 | rela-202 | 11 | 65653601 | 65662916 | - | mRNA | protein_coding |
| 14936 | enst00000525301 | sg00000173039 | rela-203 | 11 | 65660156 | 65662918 | - | lnc_RNA | retained_intron |
| 14936 | enst00000527074 | sg00000173039 | rela-210 | 11 | 65660052 | 65662918 | - | lnc_RNA | retained_intron |
| 14936 | enst00000532999 | sg00000173039 | rela-220 | 11 | 65654812 | 65662918 | - | mRNA | protein_coding |
| 14962 | enst00000532776 | sg00000173039 | rela-218 | 11 | 65661633 | 65662944 | - | lnc_RNA | retained_intron |
| 14978 | enst00000529389 | sg00000173039 | rela-215 | 11 | 65655857 | 65662960 | - | mRNA | nonsense_mediated_decay |
| 14990 | enst00000615805 | sg00000173039 | rela-227 | 11 | 65653597 | 65662972 | - | mRNA | protein_coding |
| 14990 | enst00000612991 | sg00000173039 | rela-226 | 11 | 65653599 | 65662972 | - | mRNA | protein_coding |
| 14990 | enst00000525858 | sg00000173039 | rela-206 | 11 | 65661408 | 65662972 | - | lnc_RNA | retained_intron |
| 15024 | enst00000654110 | sg00000285533 | rela-dt-203 | 11 | 65663006 | 65667304 | + | lnc_RNA | lncrna |
| 15025 | enst00000654031 | sg00000285533 | rela-dt-202 | 11 | 65663007 | 65671704 | + | lnc_RNA | lncrna |
| 15104 | enst00000648185 | sg00000285533 | rela-dt-201 | 11 | 65663086 | 65671716 | + | lnc_RNA | lncrna |
| 15108 | enst00000308639 | sg00000173039 | rela-201 | 11 | 65653602 | 65663090 | - | mRNA | protein_coding |
| -15765 | enst00000531280 | sg00000197136 | pcnx3-205 | 11 | 65630411 | 65634356 | + | lnc_RNA | processed_transcript |
| -19323 | enst00000439247 | sg00000197136 | pcnx3-202 | 11 | 65626853 | 65637305 | + | lnc_RNA | retained_intron |
| -21049 | enst00000530174 | sg00000197136 | pcnx3-203 | 11 | 65625127 | 65626779 | + | lnc_RNA | retained_intron |
| -26318 | enst00000531045 | sg00000197136 | pcnx3-204 | 11 | 65619858 | 65622299 | + | lnc_RNA | processed_transcript |
| -30403 | enst00000355703 | sg00000197136 | pcnx3-201 | 11 | 65615773 | 65637439 | + | mRNA | protein_coding |
| -30794 | enst00000524856 | sg00000173327 | map3k11-203 | 11 | 65606435 | 65615382 | - | lnc_RNA | retained_intron |
| -31927 | enst00000526293 | sg00000173327 | map3k11-204 | 11 | 65607802 | 65614249 | - | mRNA | protein_coding |
| -31928 | enst00000529839 | sg00000173327 | map3k11-207 | 11 | 65607930 | 65614248 | - | mRNA | protein_coding |
| -31940 | enst00000527304 | sg00000173327 | map3k11-206 | 11 | 65608632 | 65614236 | - | lnc_RNA | retained_intron |
| -31955 | enst00000309100 | sg00000173327 | map3k11-201 | 11 | 65597757 | 65614221 | - | mRNA | protein_coding |
| -34875 | enst00000530153 | sg00000173327 | map3k11-208 | 11 | 65597756 | 65611301 | - | mRNA | protein_coding |
| -37371 | enst00000534110 | sg00000173327 | map3k11-212 | 11 | 65608024 | 65608805 | - | lnc_RNA | retained_intron |
| -37728 | enst00000530949 | sg00000173327 | map3k11-209 | 11 | 65607706 | 65608448 | - | lnc_RNA | retained_intron |
| -37754 | enst00000524848 | sg00000173327 | map3k11-202 | 11 | 65597758 | 65608422 | - | mRNA | nonsense_mediated_decay |
| -38306 | enst00000533032 | sg00000173327 | map3k11-211 | 11 | 65607165 | 65607870 | - | lnc_RNA | retained_intron |
| -39150 | enst00000532507 | sg00000173327 | map3k11-210 | 11 | 65597756 | 65607026 | - | mRNA | protein_coding |
| -39418 | enst00000534432 | sg00000173327 | map3k11-213 | 11 | 65599451 | 65606758 | - | lnc_RNA | processed_transcript |
| -39780 | enst00000526647 | sg00000173327 | map3k11-205 | 11 | 65605722 | 65606396 | - | lnc_RNA | retained_intron |
| 47570 | enst00000491364 | sg00000239356 | rn7sl309p-201 | 11 | 65695552 | 65695837 | + | ncRNA | misc_rna |
| -50180 | enst00000394217 | sg00000173338 | kcnk7-204 | 11 | 65592855 | 65595996 | - | mRNA | protein_coding |
| -50180 | enst00000394216 | sg00000173338 | kcnk7-203 | 11 | 65592855 | 65595996 | - | mRNA | protein_coding |
| -50180 | enst00000340313 | sg00000173338 | kcnk7-201 | 11 | 65592855 | 65595996 | - | mRNA | protein_coding |
| -50368 | enst00000342202 | sg00000173338 | kcnk7-202 | 11 | 65592855 | 65595808 | - | mRNA | protein_coding |
| -52657 | enst00000525254 | sg00000173338 | kcnk7-205 | 11 | 65592869 | 65593519 | - | mRNA | protein_coding |
| -52675 | enst00000530380 | sg00000173338 | kcnk7-206 | 11 | 65592866 | 65593501 | - | mRNA | protein_coding |
| -54354 | enst00000529056 | sg00000173442 | ehbp1l1-204 | 11 | 65591822 | 65592480 | + | lnc_RNA | processed_transcript |
| -54368 | enst00000527214 | sg00000173442 | ehbp1l1-203 | 11 | 65591808 | 65592462 | + | lnc_RNA | retained_intron |
| -54787 | enst00000533364 | sg00000173442 | ehbp1l1-209 | 11 | 65591389 | 65592371 | + | lnc_RNA | retained_intron |
| -54981 | enst00000529596 | sg00000173442 | ehbp1l1-206 | 11 | 65591195 | 65592478 | + | lnc_RNA | processed_transcript |
| -61881 | enst00000529099 | sg00000173442 | ehbp1l1-205 | 11 | 65584295 | 65592462 | + | lnc_RNA | processed_transcript |
| 64014 | enst00000377046 | sg00000172977 | kat5-203 | 11 | 65711996 | 65719604 | + | mRNA | protein_coding |
| 64036 | enst00000352980 | sg00000172977 | kat5-202 | 11 | 65712018 | 65719604 | + | mRNA | protein_coding |
| 64069 | enst00000532042 | sg00000172977 | kat5-211 | 11 | 65712051 | 65713319 | + | lnc_RNA | retained_intron |
| 64257 | enst00000530446 | sg00000172977 | kat5-208 | 11 | 65712239 | 65719364 | + | mRNA | protein_coding |
| 64264 | enst00000534104 | sg00000172977 | kat5-214 | 11 | 65712246 | 65714584 | + | mRNA | protein_coding |
| 64270 | enst00000341318 | sg00000172977 | kat5-201 | 11 | 65712252 | 65719604 | + | mRNA | protein_coding |
| -64277 | enst00000533465 | sg00000173442 | ehbp1l1-210 | 11 | 65581899 | 65585303 | + | mRNA | protein_coding |
| 64396 | enst00000530605 | sg00000172977 | kat5-209 | 11 | 65712378 | 65713664 | + | mRNA | protein_coding |
| 64435 | enst00000534293 | sg00000172977 | kat5-215 | 11 | 65712417 | 65714910 | + | lnc_RNA | processed_transcript |
| 64442 | enst00000527544 | sg00000172977 | kat5-206 | 11 | 65712424 | 65714938 | + | lnc_RNA | retained_intron |
| 64514 | enst00000528198 | sg00000172977 | kat5-207 | 11 | 65712496 | 65714645 | + | mRNA | protein_coding |
| 64518 | enst00000531880 | sg00000172977 | kat5-210 | 11 | 65712500 | 65714729 | + | mRNA | protein_coding |
| 64638 | enst00000534650 | sg00000172977 | kat5-216 | 11 | 65712620 | 65719603 | + | mRNA | protein_coding |
| 64645 | enst00000525204 | sg00000172977 | kat5-204 | 11 | 65712627 | 65713665 | + | lnc_RNA | processed_transcript |
| -64652 | enst00000526990 | sg00000173442 | ehbp1l1-202 | 11 | 65581524 | 65584692 | + | lnc_RNA | retained_intron |
| 64823 | enst00000534681 | sg00000172977 | kat5-217 | 11 | 65712805 | 65714673 | + | mRNA | protein_coding |
| -67975 | enst00000531106 | sg00000173442 | ehbp1l1-207 | 11 | 65578201 | 65579380 | + | lnc_RNA | processed_transcript |
| 68251 | enst00000533441 | sg00000172977 | kat5-212 | 11 | 65716233 | 65717048 | + | lnc_RNA | retained_intron |
| -70114 | enst00000634639 | sg00000173442 | ehbp1l1-211 | 11 | 65576062 | 65585373 | + | mRNA | protein_coding |
| -70123 | enst00000309295 | sg00000173442 | ehbp1l1-201 | 11 | 65576053 | 65592650 | + | mRNA | protein_coding |
| -70130 | enst00000533237 | sg00000173442 | ehbp1l1-208 | 11 | 65576046 | 65585417 | + | mRNA | protein_coding |
| 70362 | enst00000525600 | sg00000172977 | kat5-205 | 11 | 65718344 | 65719070 | + | lnc_RNA | retained_intron |
| 70487 | enst00000645835 | sg00000172922 | rnaseh2c-212 | 11 | 65715032 | 65718469 | - | lnc_RNA | processed_transcript |
| 70724 | enst00000533596 | sg00000172977 | kat5-213 | 11 | 65718706 | 65719603 | + | mRNA | protein_coding |
| 72486 | enst00000533698 | sg00000172922 | rnaseh2c-206 | 11 | 65718536 | 65720468 | - | lnc_RNA | retained_intron |
| 72500 | enst00000642430 | sg00000172922 | rnaseh2c-208 | 11 | 65717738 | 65720482 | - | lnc_RNA | retained_intron |
| 72504 | enst00000644198 | sg00000172922 | rnaseh2c-211 | 11 | 65714005 | 65720486 | - | lnc_RNA | retained_intron |
| 72544 | enst00000646597 | sg00000172922 | rnaseh2c-213 | 11 | 65715001 | 65720526 | - | lnc_RNA | retained_intron |
| 72604 | enst00000643214 | sg00000172922 | rnaseh2c-209 | 11 | 65717709 | 65720586 | - | lnc_RNA | retained_intron |
| 72816 | enst00000531596 | sg00000172922 | rnaseh2c-205 | 11 | 65717709 | 65720798 | - | mRNA | nonsense_mediated_decay |
| 72816 | enst00000308418 | sg00000172922 | rnaseh2c-201 | 11 | 65717673 | 65720798 | - | mRNA | protein_coding |
| 72816 | enst00000534482 | sg00000172922 | rnaseh2c-207 | 11 | 65715080 | 65720798 | - | mRNA | nonsense_mediated_decay |
| 72816 | enst00000530192 | sg00000172922 | rnaseh2c-204 | 11 | 65720054 | 65720798 | - | lnc_RNA | retained_intron |
| 72819 | enst00000527610 | sg00000172922 | rnaseh2c-202 | 11 | 65719721 | 65720801 | - | mRNA | protein_coding |
| 72821 | enst00000644142 | sg00000172922 | rnaseh2c-210 | 11 | 65717715 | 65720803 | - | mRNA | nonsense_mediated_decay |
| 72836 | enst00000528220 | sg00000172922 | rnaseh2c-203 | 11 | 65717709 | 65720818 | - | lnc_RNA | retained_intron |
| -73638 | enst00000530349 | sg00000176973 | fam89b-203 | 11 | 65572538 | 65574190 | + | mRNA | protein_coding |
| -73714 | enst00000449319 | sg00000176973 | fam89b-202 | 11 | 65572462 | 65574190 | + | mRNA | protein_coding |
| -73827 | enst00000316409 | sg00000176973 | fam89b-201 | 11 | 65572349 | 65574198 | + | mRNA | protein_coding |
| -75359 | enst00000527413 | sg00000173465 | znrd2-204 | 11 | 65570817 | 65571768 | + | lnc_RNA | retained_intron |
| -75494 | enst00000526433 | sg00000173465 | znrd2-202 | 11 | 65570682 | 65573942 | + | mRNA | protein_coding |
| -75573 | enst00000533115 | sg00000173465 | znrd2-207 | 11 | 65570603 | 65572892 | + | mRNA | protein_coding |
| -75689 | enst00000526877 | sg00000173465 | znrd2-203 | 11 | 65570487 | 65571858 | + | mRNA | protein_coding |
| -75691 | enst00000527920 | sg00000173465 | znrd2-205 | 11 | 65570485 | 65572892 | + | mRNA | protein_coding |
| -75699 | enst00000309328 | sg00000173465 | znrd2-201 | 11 | 65570477 | 65571888 | + | mRNA | protein_coding |
| -75716 | enst00000531405 | sg00000173465 | znrd2-206 | 11 | 65570460 | 65571888 | + | mRNA | protein_coding |
| -75753 | enst00000623234 | sg00000260233 | znrd2-as1-202 | 11 | 65568482 | 65570423 | - | unconfirmed_transcript | tec |
| -75903 | enst00000567594 | sg00000260233 | znrd2-as1-201 | 11 | 65569660 | 65570273 | - | lnc_RNA | lncrna |
| 78957 | enst00000534154 | sg00000214659 | krt8p26-201 | 11 | 65726939 | 65728214 | + | pseudogenic_transcript | processed_pseudogene |
| -84692 | enst00000625165 | sg00000279093 | ap001362.1-201 | 11 | 65561484 | 65561607 | + | unconfirmed_transcript | tec |
| -87246 | enst00000530866 | sg00000168056 | ltbp3-218 | 11 | 65539411 | 65558930 | - | mRNA | protein_coding |
| -87508 | enst00000301873 | sg00000168056 | ltbp3-201 | 11 | 65538818 | 65558668 | - | mRNA | protein_coding |
| -88138 | enst00000528516 | sg00000168056 | ltbp3-210 | 11 | 65538991 | 65558038 | - | mRNA | nonsense_mediated_decay |
| -88217 | enst00000322147 | sg00000168056 | ltbp3-202 | 11 | 65538805 | 65557959 | - | mRNA | protein_coding |
| -88411 | enst00000526825 | sg00000168056 | ltbp3-206 | 11 | 65551972 | 65557765 | - | mRNA | nonsense_mediated_decay |
| -88411 | enst00000526927 | sg00000168056 | ltbp3-207 | 11 | 65539052 | 65557765 | - | mRNA | protein_coding |
| -92036 | enst00000524798 | sg00000168056 | ltbp3-203 | 11 | 65552124 | 65554140 | - | lnc_RNA | retained_intron |
| -92449 | enst00000530426 | sg00000168056 | ltbp3-216 | 11 | 65552112 | 65553727 | - | mRNA | protein_coding |
| -93199 | enst00000527792 | sg00000168056 | ltbp3-209 | 11 | 65551512 | 65552977 | - | lnc_RNA | retained_intron |
| -94300 | enst00000529764 | sg00000168056 | ltbp3-215 | 11 | 65548019 | 65551876 | - | lnc_RNA | retained_intron |
| -94397 | enst00000528966 | sg00000168056 | ltbp3-211 | 11 | 65547970 | 65551779 | - | lnc_RNA | retained_intron |
| -97257 | enst00000532932 | sg00000168056 | ltbp3-221 | 11 | 65538819 | 65548919 | - | mRNA | protein_coding |
| 97747 | enst00000534505 | sg00000255557 | ap001266.2-201 | 11 | 65745729 | 65771585 | + | lnc_RNA | lncrna |
| -98611 | enst00000527339 | sg00000168056 | ltbp3-208 | 11 | 65546196 | 65547565 | - | mRNA | protein_coding |
| -99417 | enst00000529189 | sg00000168056 | ltbp3-212 | 11 | 65538819 | 65546759 | - | mRNA | protein_coding |
| -100406 | enst00000525443 | sg00000168056 | ltbp3-204 | 11 | 65542407 | 65545770 | - | lnc_RNA | retained_intron |
| -101472 | enst00000530785 | sg00000168056 | ltbp3-217 | 11 | 65538819 | 65544704 | - | mRNA | protein_coding |
| -104138 | enst00000529582 | sg00000168056 | ltbp3-214 | 11 | 65538817 | 65542038 | - | lnc_RNA | retained_intron |
| -104345 | enst00000530990 | sg00000168056 | ltbp3-219 | 11 | 65540995 | 65541831 | - | lnc_RNA | retained_intron |
| -104556 | enst00000526124 | sg00000168056 | ltbp3-205 | 11 | 65540797 | 65541620 | - | lnc_RNA | retained_intron |
| -105493 | enst00000532661 | sg00000168056 | ltbp3-220 | 11 | 65539195 | 65540683 | - | mRNA | protein_coding |
| -105724 | enst00000529371 | sg00000168056 | ltbp3-213 | 11 | 65539336 | 65540452 | - | mRNA | protein_coding |
| -108327 | enst00000532290 | sg00000142186 | scyl1-213 | 11 | 65537849 | 65538704 | + | lnc_RNA | retained_intron |
| -108345 | enst00000534462 | sg00000142186 | scyl1-215 | 11 | 65537831 | 65538704 | + | lnc_RNA | processed_transcript |
| -109911 | enst00000528545 | sg00000142186 | scyl1-209 | 11 | 65536265 | 65538704 | + | mRNA | protein_coding |
| -110735 | enst00000529981 | sg00000142186 | scyl1-211 | 11 | 65535441 | 65536626 | + | lnc_RNA | retained_intron |
| -110842 | enst00000526454 | sg00000142186 | scyl1-207 | 11 | 65535334 | 65536404 | + | lnc_RNA | retained_intron |
| -111045 | enst00000524897 | sg00000142186 | scyl1-204 | 11 | 65535131 | 65537123 | + | lnc_RNA | retained_intron |
| -113428 | enst00000531601 | sg00000142186 | scyl1-212 | 11 | 65532748 | 65538008 | + | mRNA | nonsense_mediated_decay |
| -115409 | enst00000529178 | sg00000142186 | scyl1-210 | 11 | 65530767 | 65533258 | + | lnc_RNA | retained_intron |
| -115537 | enst00000279270 | sg00000142186 | scyl1-202 | 11 | 65530639 | 65538701 | + | mRNA | protein_coding |
| -120763 | enst00000527009 | sg00000142186 | scyl1-208 | 11 | 65525413 | 65538675 | + | mRNA | protein_coding |
| -121055 | enst00000524944 | sg00000142186 | scyl1-205 | 11 | 65525121 | 65538704 | + | mRNA | protein_coding |
| -121064 | enst00000533862 | sg00000142186 | scyl1-214 | 11 | 65525112 | 65538704 | + | mRNA | protein_coding |
| -121091 | enst00000420247 | sg00000142186 | scyl1-203 | 11 | 65525085 | 65538704 | + | mRNA | protein_coding |
| -121093 | enst00000270176 | sg00000142186 | scyl1-201 | 11 | 65525083 | 65538704 | + | mRNA | protein_coding |
| -121099 | enst00000525364 | sg00000142186 | scyl1-206 | 11 | 65525077 | 65538704 | + | mRNA | protein_coding |
| -131253 | enst00000603826 | sg00000270526 | snrpgp19-201 | 11 | 65514403 | 65514923 | - | pseudogenic_transcript | processed_pseudogene |
| 132994 | enst00000532090 | sg00000254470 | ap5b1-201 | 11 | 65773898 | 65780976 | - | mRNA | protein_coding |
| 139081 | enst00000335987 | sg00000172818 | ovol1-201 | 11 | 65787063 | 65797214 | + | mRNA | protein_coding |
| -140059 | enst00000611300 | sg00000274072 | ap000769.3-201 | 11 | 65506117 | 65506173 | + | snRNA | srna |
| -140969 | enst00000616691 | sg00000251562 | malat1-209 | 11 | 65505207 | 65506516 | + | lnc_RNA | lncrna |
| -140972 | enst00000617489 | sg00000251562 | malat1-210 | 11 | 65505204 | 65506469 | + | lnc_RNA | lncrna |
| -141338 | enst00000618227 | sg00000251562 | malat1-213 | 11 | 65504838 | 65506465 | + | lnc_RNA | lncrna |
| -141657 | enst00000610851 | sg00000251562 | malat1-205 | 11 | 65504519 | 65506468 | + | lnc_RNA | lncrna |
| -141680 | enst00000613376 | sg00000251562 | malat1-207 | 11 | 65504496 | 65504851 | + | lnc_RNA | lncrna |
| 141893 | enst00000534178 | sg00000255120 | ovol1-as1-203 | 11 | 65789051 | 65789875 | - | lnc_RNA | lncrna |
| 142039 | enst00000527453 | sg00000255120 | ovol1-as1-201 | 11 | 65789051 | 65790021 | - | lnc_RNA | lncrna |
| 142147 | enst00000531907 | sg00000172818 | ovol1-202 | 11 | 65790129 | 65794095 | + | lnc_RNA | processed_transcript |
| -142171 | enst00000618132 | sg00000251562 | malat1-212 | 11 | 65504005 | 65504848 | + | lnc_RNA | lncrna |
| -142471 | enst00000612781 | sg00000251562 | malat1-206 | 11 | 65503705 | 65504689 | + | lnc_RNA | lncrna |
| -142497 | enst00000620465 | sg00000251562 | malat1-216 | 11 | 65503679 | 65504463 | + | lnc_RNA | lncrna |
| 142886 | enst00000532454 | sg00000255120 | ovol1-as1-202 | 11 | 65789051 | 65790868 | - | lnc_RNA | lncrna |
| -143262 | enst00000618249 | sg00000278217 | ap000769.5-201 | 11 | 65502914 | 65503008 | + | ncRNA | misc_rna |
| -143447 | enst00000618925 | sg00000251562 | malat1-214 | 11 | 65502729 | 65503760 | + | lnc_RNA | lncrna |
| -144216 | enst00000616527 | sg00000251562 | malat1-208 | 11 | 65501960 | 65504463 | + | lnc_RNA | lncrna |
| -144328 | enst00000508832 | sg00000251562 | malat1-201 | 11 | 65501848 | 65503609 | + | lnc_RNA | lncrna |
| 145727 | enst00000532448 | sg00000172818 | ovol1-203 | 11 | 65793709 | 65796089 | + | mRNA | protein_coding |
| -145953 | enst00000610481 | sg00000251562 | malat1-204 | 11 | 65500223 | 65500713 | + | lnc_RNA | lncrna |
| -147134 | enst00000544868 | sg00000251562 | malat1-203 | 11 | 65499042 | 65500970 | + | lnc_RNA | lncrna |
| -147134 | enst00000617791 | sg00000251562 | malat1-211 | 11 | 65499042 | 65499785 | + | lnc_RNA | lncrna |
| -147134 | enst00000620902 | sg00000251562 | malat1-217 | 11 | 65499042 | 65499706 | + | lnc_RNA | lncrna |
| -147771 | enst00000602344 | sg00000270117 | ap000769.2-201 | 11 | 65498010 | 65498405 | - | lnc_RNA | lncrna |
| -148414 | enst00000534336 | sg00000251562 | malat1-202 | 11 | 65497762 | 65506469 | + | lnc_RNA | lncrna |
| -148488 | enst00000619449 | sg00000251562 | malat1-215 | 11 | 65497688 | 65506431 | + | lnc_RNA | lncrna |
| 149237 | enst00000531155 | sg00000255404 | ap001266.1-201 | 11 | 65795946 | 65797219 | - | lnc_RNA | lncrna |
| -157462 | enst00000666139 | sg00000279243 | linc02736-204 | 11 | 65487241 | 65488714 | - | lnc_RNA | lncrna |
| -157945 | enst00000650251 | sg00000279243 | linc02736-202 | 11 | 65487246 | 65488231 | - | lnc_RNA | lncrna |
| -157976 | enst00000622944 | sg00000279243 | linc02736-201 | 11 | 65487243 | 65488200 | - | lnc_RNA | lncrna |
| -158292 | enst00000665037 | sg00000286756 | ap000769.6-201 | 11 | 65487884 | 65488896 | + | lnc_RNA | lncrna |
| -158370 | enst00000660598 | sg00000279243 | linc02736-203 | 11 | 65487242 | 65487806 | - | lnc_RNA | lncrna |
| 176121 | enst00000530157 | sg00000172757 | cfl1-208 | 11 | 65823022 | 65824103 | - | lnc_RNA | processed_transcript |
| 183788 | enst00000525710 | sg00000172757 | cfl1-204 | 11 | 65826322 | 65831770 | - | lnc_RNA | processed_transcript |
| 185852 | enst00000533298 | sg00000172803 | snx32-208 | 11 | 65833834 | 65850760 | + | lnc_RNA | retained_intron |
| 185917 | enst00000531503 | sg00000172803 | snx32-205 | 11 | 65833899 | 65850253 | + | lnc_RNA | retained_intron |
| 185961 | enst00000531795 | sg00000172803 | snx32-206 | 11 | 65833943 | 65849512 | + | lnc_RNA | processed_transcript |
| 185977 | enst00000526972 | sg00000172803 | snx32-203 | 11 | 65833959 | 65851454 | + | lnc_RNA | retained_intron |
| 185981 | enst00000308342 | sg00000172803 | snx32-201 | 11 | 65833963 | 65853701 | + | mRNA | protein_coding |
| 185985 | enst00000534387 | sg00000172803 | snx32-209 | 11 | 65833967 | 65850563 | + | lnc_RNA | retained_intron |
| 185991 | enst00000524729 | sg00000172803 | snx32-202 | 11 | 65833973 | 65850259 | + | lnc_RNA | retained_intron |
| 185997 | enst00000530101 | sg00000172803 | snx32-204 | 11 | 65833979 | 65856896 | + | lnc_RNA | retained_intron |
| 186022 | enst00000533236 | sg00000172803 | snx32-207 | 11 | 65834004 | 65851348 | + | lnc_RNA | retained_intron |
| -190863 | enst00000309775 | sg00000173727 | ap000769.1-204 | 11 | 65455313 | 65466720 | + | lnc_RNA | processed_transcript |
| -190907 | enst00000637245 | sg00000173727 | ap000769.1-203 | 11 | 65455269 | 65455581 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -190909 | enst00000637877 | sg00000173727 | ap000769.1-202 | 11 | 65455267 | 65456610 | + | lnc_RNA | processed_transcript |
| -190918 | enst00000619960 | sg00000173727 | ap000769.1-201 | 11 | 65455258 | 65456318 | + | lnc_RNA | processed_transcript |
| -200635 | enst00000616984 | sg00000275948 | ap000769.4-201 | 11 | 65445541 | 65445598 | + | snRNA | srna |
| -201718 | enst00000384994 | sg00000283791 | mir612-201 | 11 | 65444458 | 65444557 | + | miRNA | mirna |
| 208491 | enst00000530413 | sg00000172757 | cfl1-209 | 11 | 65855418 | 65856473 | - | mRNA | protein_coding |
| 208982 | enst00000524553 | sg00000172757 | cfl1-202 | 11 | 65855054 | 65856964 | - | mRNA | protein_coding |
| 209051 | enst00000527344 | sg00000172757 | cfl1-206 | 11 | 65854975 | 65857033 | - | mRNA | protein_coding |
| 209144 | enst00000529857 | sg00000172732 | mus81-210 | 11 | 65857126 | 65862008 | + | mRNA | protein_coding |
| 209561 | enst00000534784 | sg00000172757 | cfl1-215 | 11 | 65855957 | 65857543 | - | mRNA | protein_coding |
| 209886 | enst00000531407 | sg00000172757 | cfl1-211 | 11 | 65855009 | 65857868 | - | mRNA | protein_coding |
| 210175 | enst00000527752 | sg00000172757 | cfl1-207 | 11 | 65823022 | 65858157 | - | lnc_RNA | processed_transcript |
| 210198 | enst00000308162 | sg00000172757 | cfl1-201 | 11 | 65854673 | 65858180 | - | mRNA | protein_coding |
| 210212 | enst00000530945 | sg00000172757 | cfl1-210 | 11 | 65854832 | 65858194 | - | lnc_RNA | retained_intron |
| 211300 | enst00000526975 | sg00000172757 | cfl1-205 | 11 | 65855974 | 65859282 | - | mRNA | protein_coding |
| 211307 | enst00000531413 | sg00000172757 | cfl1-212 | 11 | 65855257 | 65859289 | - | mRNA | protein_coding |
| 211433 | enst00000525451 | sg00000172757 | cfl1-203 | 11 | 65854675 | 65859415 | - | mRNA | protein_coding |
| 212080 | enst00000533035 | sg00000172732 | mus81-215 | 11 | 65860062 | 65866440 | + | mRNA | protein_coding |
| 212451 | enst00000308110 | sg00000172732 | mus81-201 | 11 | 65860433 | 65866439 | + | mRNA | protein_coding |
| 212563 | enst00000525768 | sg00000172732 | mus81-206 | 11 | 65860545 | 65863089 | + | mRNA | protein_coding |
| 212878 | enst00000524647 | sg00000172732 | mus81-202 | 11 | 65860860 | 65866417 | + | mRNA | nonsense_mediated_decay |
| 213083 | enst00000529374 | sg00000172732 | mus81-207 | 11 | 65861065 | 65865274 | + | mRNA | protein_coding |
| 213315 | enst00000533555 | sg00000172732 | mus81-217 | 11 | 65861297 | 65863422 | + | lnc_RNA | retained_intron |
| 213376 | enst00000531905 | sg00000172732 | mus81-214 | 11 | 65861358 | 65866438 | + | lnc_RNA | retained_intron |
| 213417 | enst00000530111 | sg00000172732 | mus81-211 | 11 | 65861399 | 65863890 | + | mRNA | protein_coding |
| 213439 | enst00000534769 | sg00000172757 | cfl1-214 | 11 | 65855241 | 65861421 | - | mRNA | protein_coding |
| 214044 | enst00000532134 | sg00000172757 | cfl1-213 | 11 | 65855358 | 65862026 | - | mRNA | protein_coding |
| 215095 | enst00000530928 | sg00000172732 | mus81-213 | 11 | 65863077 | 65866418 | + | lnc_RNA | retained_intron |
| 215651 | enst00000525147 | sg00000172732 | mus81-204 | 11 | 65863633 | 65864815 | + | lnc_RNA | retained_intron |
| 215824 | enst00000525224 | sg00000172732 | mus81-205 | 11 | 65863806 | 65864815 | + | lnc_RNA | processed_transcript |
| 215904 | enst00000529786 | sg00000172732 | mus81-209 | 11 | 65863886 | 65865644 | + | lnc_RNA | retained_intron |
| 216878 | enst00000530282 | sg00000172732 | mus81-212 | 11 | 65864860 | 65866175 | + | lnc_RNA | retained_intron |
| 217186 | enst00000533519 | sg00000172732 | mus81-216 | 11 | 65865168 | 65866439 | + | lnc_RNA | retained_intron |
| 217238 | enst00000529742 | sg00000172732 | mus81-208 | 11 | 65865220 | 65866439 | + | mRNA | protein_coding |
| 217876 | enst00000525006 | sg00000172732 | mus81-203 | 11 | 65865858 | 65867653 | + | lnc_RNA | processed_transcript |
| 219098 | enst00000527277 | sg00000172638 | efemp2-207 | 11 | 65866441 | 65867080 | - | mRNA | nonsense_mediated_decay |
| 219685 | enst00000532648 | sg00000172638 | efemp2-219 | 11 | 65866565 | 65867667 | - | lnc_RNA | processed_transcript |
| 219924 | enst00000524408 | sg00000172638 | efemp2-202 | 11 | 65866448 | 65867906 | - | mRNA | nonsense_mediated_decay |
| 220025 | enst00000526911 | sg00000172638 | efemp2-206 | 11 | 65866447 | 65868007 | - | mRNA | protein_coding |
| 220434 | enst00000531645 | sg00000172638 | efemp2-216 | 11 | 65866447 | 65868416 | - | mRNA | protein_coding |
| 220447 | enst00000525392 | sg00000172638 | efemp2-203 | 11 | 65867673 | 65868429 | - | lnc_RNA | retained_intron |
| 220530 | enst00000528409 | sg00000172638 | efemp2-211 | 11 | 65866825 | 65868512 | - | lnc_RNA | retained_intron |
| 220554 | enst00000530806 | sg00000172638 | efemp2-213 | 11 | 65866979 | 65868536 | - | mRNA | protein_coding |
| -220625 | enst00000616315 | sg00000245532 | neat1-205 | 11 | 65425551 | 65426385 | + | lnc_RNA | lncrna |
| 221530 | enst00000532084 | sg00000172638 | efemp2-218 | 11 | 65867886 | 65869512 | - | lnc_RNA | retained_intron |
| 221940 | enst00000526628 | sg00000172638 | efemp2-205 | 11 | 65866442 | 65869922 | - | lnc_RNA | retained_intron |
| -222216 | enst00000613347 | sg00000277599 | ap000944.2-201 | 11 | 65423960 | 65424118 | + | ncRNA | misc_rna |
| -222538 | enst00000620525 | sg00000278050 | ap000944.3-201 | 11 | 65423638 | 65423742 | + | ncRNA | misc_rna |
| -222637 | enst00000642367 | sg00000245532 | neat1-206 | 11 | 65423539 | 65424967 | + | lnc_RNA | lncrna |
| -222903 | enst00000620348 | sg00000278144 | ap000944.4-201 | 11 | 65423273 | 65423392 | + | ncRNA | misc_rna |
| -223051 | enst00000645023 | sg00000245532 | neat1-207 | 11 | 65423125 | 65426499 | + | lnc_RNA | lncrna |
| -223080 | enst00000646243 | sg00000245532 | neat1-208 | 11 | 65423096 | 65426513 | + | lnc_RNA | lncrna |
| -223206 | enst00000670617 | sg00000245532 | neat1-209 | 11 | 65422970 | 65426513 | + | lnc_RNA | lncrna |
| 223220 | enst00000527969 | sg00000172638 | efemp2-209 | 11 | 65868480 | 65871202 | - | lnc_RNA | retained_intron |
| -223372 | enst00000612303 | sg00000245532 | neat1-204 | 11 | 65422804 | 65424404 | + | lnc_RNA | lncrna |
| -223376 | enst00000601801 | sg00000245532 | neat1-203 | 11 | 65422800 | 65426405 | + | lnc_RNA | lncrna |
| -223378 | enst00000501122 | sg00000245532 | neat1-202 | 11 | 65422798 | 65445540 | + | lnc_RNA | lncrna |
| -223402 | enst00000499732 | sg00000245532 | neat1-201 | 11 | 65422774 | 65426457 | + | lnc_RNA | lncrna |
| 224037 | enst00000531005 | sg00000172638 | efemp2-215 | 11 | 65867890 | 65872019 | - | lnc_RNA | retained_intron |
| 224672 | enst00000526624 | sg00000172638 | efemp2-204 | 11 | 65870121 | 65872654 | - | mRNA | protein_coding |
| 224758 | enst00000530850 | sg00000172638 | efemp2-214 | 11 | 65870216 | 65872740 | - | mRNA | nonsense_mediated_decay |
| 224761 | enst00000528176 | sg00000172638 | efemp2-210 | 11 | 65866447 | 65872743 | - | mRNA | protein_coding |
| 224790 | enst00000529870 | sg00000172638 | efemp2-212 | 11 | 65871416 | 65872772 | - | lnc_RNA | retained_intron |
| 224818 | enst00000307998 | sg00000172638 | efemp2-201 | 11 | 65866441 | 65872800 | - | mRNA | protein_coding |
| 224829 | enst00000531972 | sg00000172638 | efemp2-217 | 11 | 65866441 | 65872811 | - | mRNA | nonsense_mediated_decay |
| 224960 | enst00000533347 | sg00000172638 | efemp2-220 | 11 | 65869857 | 65872942 | - | mRNA | nonsense_mediated_decay |
| 225610 | enst00000527378 | sg00000172638 | efemp2-208 | 11 | 65870179 | 65873592 | - | mRNA | protein_coding |
| 231855 | enst00000307886 | sg00000172543 | ctsw-201 | 11 | 65879837 | 65883741 | + | mRNA | protein_coding |
| 231860 | enst00000524681 | sg00000172543 | ctsw-202 | 11 | 65879842 | 65880622 | + | lnc_RNA | retained_intron |
| 231869 | enst00000528419 | sg00000172543 | ctsw-204 | 11 | 65879851 | 65883741 | + | mRNA | protein_coding |
| 231876 | enst00000526034 | sg00000172543 | ctsw-203 | 11 | 65879858 | 65882877 | + | mRNA | protein_coding |
| 237590 | enst00000534032 | sg00000172500 | fibp-213 | 11 | 65883741 | 65885572 | - | lnc_RNA | retained_intron |
| 237598 | enst00000531115 | sg00000172500 | fibp-207 | 11 | 65883925 | 65885580 | - | mRNA | nonsense_mediated_decay |
| 237647 | enst00000525765 | sg00000172500 | fibp-205 | 11 | 65883923 | 65885629 | - | lnc_RNA | retained_intron |
| 237728 | enst00000532934 | sg00000172500 | fibp-210 | 11 | 65884912 | 65885710 | - | lnc_RNA | retained_intron |
| 240454 | enst00000532229 | sg00000172500 | fibp-208 | 11 | 65884935 | 65888436 | - | mRNA | nonsense_mediated_decay |
| 240479 | enst00000532679 | sg00000172500 | fibp-209 | 11 | 65885331 | 65888461 | - | lnc_RNA | retained_intron |
| 240479 | enst00000426652 | sg00000172500 | fibp-203 | 11 | 65886107 | 65888461 | - | lnc_RNA | processed_transcript |
| 240508 | enst00000533037 | sg00000172500 | fibp-211 | 11 | 65884009 | 65888490 | - | mRNA | nonsense_mediated_decay |
| 240528 | enst00000442885 | sg00000172500 | fibp-204 | 11 | 65887330 | 65888510 | - | lnc_RNA | retained_intron |
| 240531 | enst00000528937 | sg00000172500 | fibp-206 | 11 | 65886728 | 65888513 | - | lnc_RNA | retained_intron |
| 240532 | enst00000533045 | sg00000172500 | fibp-212 | 11 | 65883948 | 65888514 | - | mRNA | protein_coding |
| 240549 | enst00000338369 | sg00000172500 | fibp-201 | 11 | 65883921 | 65888531 | - | mRNA | protein_coding |
| 240557 | enst00000357519 | sg00000172500 | fibp-202 | 11 | 65883921 | 65888539 | - | mRNA | protein_coding |
| 242691 | enst00000312579 | sg00000175602 | ccdc85b-201 | 11 | 65890673 | 65891635 | + | mRNA | protein_coding |
| -251914 | enst00000531151 | sg00000126391 | frmd8-207 | 11 | 65394262 | 65399897 | + | lnc_RNA | retained_intron |
| 252406 | enst00000312562 | sg00000175592 | fosl1-201 | 11 | 65892049 | 65900388 | - | mRNA | protein_coding |
| 252437 | enst00000531493 | sg00000175592 | fosl1-203 | 11 | 65892474 | 65900419 | - | mRNA | protein_coding |
| 252437 | enst00000532401 | sg00000175592 | fosl1-204 | 11 | 65892645 | 65900419 | - | mRNA | protein_coding |
| 252437 | enst00000448083 | sg00000175592 | fosl1-202 | 11 | 65892049 | 65900419 | - | mRNA | protein_coding |
| 252591 | enst00000534222 | sg00000175592 | fosl1-205 | 11 | 65893004 | 65900573 | - | mRNA | protein_coding |
| -259248 | enst00000525156 | sg00000126391 | frmd8-204 | 11 | 65386928 | 65393590 | + | mRNA | protein_coding |
| -259516 | enst00000526201 | sg00000126391 | frmd8-205 | 11 | 65386660 | 65396809 | + | mRNA | protein_coding |
| -259519 | enst00000416776 | sg00000126391 | frmd8-203 | 11 | 65386657 | 65411780 | + | mRNA | protein_coding |
| -259539 | enst00000355991 | sg00000126391 | frmd8-202 | 11 | 65386637 | 65413522 | + | mRNA | protein_coding |
| -259539 | enst00000317568 | sg00000126391 | frmd8-201 | 11 | 65386637 | 65413525 | + | mRNA | protein_coding |
| -259539 | enst00000533782 | sg00000126391 | frmd8-209 | 11 | 65386637 | 65396937 | + | mRNA | protein_coding |
| -259550 | enst00000528854 | sg00000126391 | frmd8-206 | 11 | 65386626 | 65393755 | + | lnc_RNA | retained_intron |
| -259555 | enst00000531296 | sg00000126391 | frmd8-208 | 11 | 65386621 | 65387261 | + | mRNA | protein_coding |
| -262475 | enst00000526898 | sg00000162241 | slc25a45-207 | 11 | 65375195 | 65383701 | - | mRNA | nonsense_mediated_decay |
| -263502 | enst00000530936 | sg00000162241 | slc25a45-211 | 11 | 65377062 | 65382674 | - | mRNA | protein_coding |
| -263503 | enst00000524438 | sg00000162241 | slc25a45-203 | 11 | 65379457 | 65382673 | - | mRNA | nonsense_mediated_decay |
| -263505 | enst00000398802 | sg00000162241 | slc25a45-202 | 11 | 65375192 | 65382671 | - | mRNA | protein_coding |
| -263530 | enst00000531791 | sg00000162241 | slc25a45-212 | 11 | 65375194 | 65382646 | - | lnc_RNA | retained_intron |
| -263531 | enst00000529962 | sg00000162241 | slc25a45-210 | 11 | 65379453 | 65382645 | - | mRNA | nonsense_mediated_decay |
| -263534 | enst00000529431 | sg00000162241 | slc25a45-209 | 11 | 65381588 | 65382642 | - | lnc_RNA | retained_intron |
| -263538 | enst00000294187 | sg00000162241 | slc25a45-201 | 11 | 65375194 | 65382638 | - | mRNA | protein_coding |
| -263545 | enst00000533629 | sg00000162241 | slc25a45-213 | 11 | 65376557 | 65382631 | - | mRNA | nonsense_mediated_decay |
| -263803 | enst00000534028 | sg00000162241 | slc25a45-214 | 11 | 65375192 | 65382373 | - | mRNA | protein_coding |
| -264169 | enst00000527174 | sg00000162241 | slc25a45-208 | 11 | 65375192 | 65382007 | - | mRNA | protein_coding |
| -264198 | enst00000526259 | sg00000162241 | slc25a45-205 | 11 | 65376911 | 65381978 | - | mRNA | nonsense_mediated_decay |
| -264225 | enst00000526432 | sg00000162241 | slc25a45-206 | 11 | 65376194 | 65381951 | - | mRNA | protein_coding |
| -265187 | enst00000525944 | sg00000162241 | slc25a45-204 | 11 | 65379458 | 65380989 | - | lnc_RNA | retained_intron |
| -268151 | enst00000534338 | sg00000162241 | slc25a45-215 | 11 | 65375192 | 65378025 | - | lnc_RNA | retained_intron |
| 270378 | enst00000530188 | sg00000175573 | c11orf68-203 | 11 | 65916833 | 65918360 | - | mRNA | protein_coding |
| 271080 | enst00000449692 | sg00000175573 | c11orf68-202 | 11 | 65916810 | 65919062 | - | mRNA | protein_coding |
| 271080 | enst00000438576 | sg00000175573 | c11orf68-201 | 11 | 65916810 | 65919062 | - | mRNA | protein_coding |
| 271292 | enst00000525501 | sg00000175550 | drap1-204 | 11 | 65919274 | 65921401 | + | mRNA | protein_coding |
| 271353 | enst00000376991 | sg00000175550 | drap1-202 | 11 | 65919335 | 65921448 | + | mRNA | protein_coding |
| 271444 | enst00000312515 | sg00000175550 | drap1-201 | 11 | 65919426 | 65921563 | + | mRNA | protein_coding |
| 271455 | enst00000531121 | sg00000175550 | drap1-207 | 11 | 65919437 | 65920972 | + | lnc_RNA | retained_intron |
| 271520 | enst00000527119 | sg00000175550 | drap1-205 | 11 | 65919502 | 65921530 | + | mRNA | protein_coding |
| 271742 | enst00000532933 | sg00000175550 | drap1-208 | 11 | 65919724 | 65921554 | + | mRNA | protein_coding |
| 272148 | enst00000530791 | sg00000175550 | drap1-206 | 11 | 65920130 | 65921544 | + | lnc_RNA | retained_intron |
| 272332 | enst00000534333 | sg00000175550 | drap1-209 | 11 | 65920314 | 65921450 | + | lnc_RNA | retained_intron |
| 273070 | enst00000525190 | sg00000175550 | drap1-203 | 11 | 65921052 | 65921525 | + | lnc_RNA | retained_intron |
| -278738 | enst00000533886 | sg00000255478 | ap000944.1-201 | 11 | 65367438 | 65375299 | + | lnc_RNA | lncrna |
| -291425 | enst00000309880 | sg00000173825 | tigd3-201 | 11 | 65354751 | 65357613 | + | mRNA | protein_coding |
| 297463 | enst00000532620 | sg00000175513 | tsga10ip-203 | 11 | 65945445 | 65959963 | + | mRNA | protein_coding |
| 297662 | enst00000534740 | sg00000175513 | tsga10ip-204 | 11 | 65945644 | 65959963 | + | mRNA | nonsense_mediated_decay |
| 297662 | enst00000608857 | sg00000175513 | tsga10ip-205 | 11 | 65945644 | 65959963 | + | mRNA | nonsense_mediated_decay |
| 297674 | enst00000531518 | sg00000175513 | tsga10ip-202 | 11 | 65945656 | 65947296 | + | lnc_RNA | retained_intron |
| 297709 | enst00000528291 | sg00000175513 | tsga10ip-201 | 11 | 65945691 | 65947359 | + | mRNA | nonsense_mediated_decay |
| -300435 | enst00000531989 | sg00000133884 | dpf2-208 | 11 | 65345741 | 65352981 | + | mRNA | protein_coding |
| -301916 | enst00000532052 | sg00000133884 | dpf2-209 | 11 | 65344260 | 65352979 | + | lnc_RNA | retained_intron |
| -302671 | enst00000532492 | sg00000133884 | dpf2-212 | 11 | 65343505 | 65344095 | + | lnc_RNA | retained_intron |
| -304689 | enst00000530973 | sg00000133884 | dpf2-206 | 11 | 65341487 | 65346119 | + | lnc_RNA | retained_intron |
| -312299 | enst00000532102 | sg00000133884 | dpf2-210 | 11 | 65333877 | 65345706 | + | mRNA | nonsense_mediated_decay |
| -312301 | enst00000532264 | sg00000133884 | dpf2-211 | 11 | 65333875 | 65346029 | + | lnc_RNA | processed_transcript |
| -312303 | enst00000524666 | sg00000133884 | dpf2-204 | 11 | 65333873 | 65352981 | + | lnc_RNA | retained_intron |
| -312309 | enst00000252268 | sg00000133884 | dpf2-201 | 11 | 65333867 | 65352983 | + | mRNA | protein_coding |
| -312314 | enst00000530993 | sg00000133884 | dpf2-207 | 11 | 65333862 | 65345746 | + | lnc_RNA | processed_transcript |
| -312321 | enst00000415073 | sg00000133884 | dpf2-202 | 11 | 65333855 | 65353188 | + | mRNA | protein_coding |
| -312324 | enst00000444314 | sg00000133884 | dpf2-203 | 11 | 65333852 | 65342002 | + | lnc_RNA | retained_intron |
| -312324 | enst00000528416 | sg00000133884 | dpf2-205 | 11 | 65333852 | 65354262 | + | mRNA | protein_coding |
| 313746 | enst00000529532 | sg00000175467 | sart1-204 | 11 | 65961728 | 65967316 | + | lnc_RNA | retained_intron |
| 313746 | enst00000532333 | sg00000175467 | sart1-207 | 11 | 65961728 | 65964512 | + | lnc_RNA | retained_intron |
| 313747 | enst00000528573 | sg00000175467 | sart1-203 | 11 | 65961729 | 65965129 | + | lnc_RNA | processed_transcript |
| 313747 | enst00000530251 | sg00000175467 | sart1-206 | 11 | 65961729 | 65965447 | + | mRNA | nonsense_mediated_decay |
| 313752 | enst00000312397 | sg00000175467 | sart1-201 | 11 | 65961734 | 65980137 | + | mRNA | protein_coding |
| 328767 | enst00000533386 | sg00000175467 | sart1-208 | 11 | 65976749 | 65978152 | + | lnc_RNA | retained_intron |
| -329134 | enst00000533419 | sg00000149798 | cdc42ep2-202 | 11 | 65317042 | 65321621 | + | mRNA | protein_coding |
| 329783 | enst00000529580 | sg00000175467 | sart1-205 | 11 | 65977765 | 65978957 | + | lnc_RNA | retained_intron |
| 330505 | enst00000528137 | sg00000175467 | sart1-202 | 11 | 65978487 | 65979089 | + | lnc_RNA | retained_intron |
| -331310 | enst00000279249 | sg00000149798 | cdc42ep2-201 | 11 | 65314866 | 65322417 | + | mRNA | protein_coding |
| -331932 | enst00000652984 | sg00000287917 | ap000944.7-201 | 11 | 65305406 | 65314244 | - | lnc_RNA | lncrna |
| -332087 | enst00000666131 | sg00000287917 | ap000944.7-202 | 11 | 65307860 | 65314089 | - | lnc_RNA | lncrna |
| 336349 | enst00000533995 | sg00000254867 | ap006287.1-201 | 11 | 65983679 | 65984331 | - | pseudogenic_transcript | processed_pseudogene |
| -351998 | enst00000534785 | sg00000014138 | pola2-208 | 11 | 65294178 | 65297552 | + | lnc_RNA | processed_transcript |
| 352500 | enst00000529973 | sg00000175376 | eif1ad-208 | 11 | 65998614 | 66000482 | - | mRNA | nonsense_mediated_decay |
| 352760 | enst00000527051 | sg00000175376 | eif1ad-205 | 11 | 65999637 | 66000742 | - | mRNA | protein_coding |
| 354154 | enst00000532707 | sg00000175376 | eif1ad-210 | 11 | 65999363 | 66002136 | - | mRNA | protein_coding |
| 354174 | enst00000526451 | sg00000175376 | eif1ad-204 | 11 | 65996545 | 66002156 | - | mRNA | protein_coding |
| 354175 | enst00000533544 | sg00000175376 | eif1ad-211 | 11 | 65996545 | 66002157 | - | mRNA | protein_coding |
| 354175 | enst00000526449 | sg00000175376 | eif1ad-203 | 11 | 65999898 | 66002157 | - | lnc_RNA | retained_intron |
| 354175 | enst00000312234 | sg00000175376 | eif1ad-201 | 11 | 65996545 | 66002157 | - | mRNA | protein_coding |
| 354178 | enst00000530462 | sg00000175376 | eif1ad-209 | 11 | 65999360 | 66002160 | - | mRNA | protein_coding |
| 354179 | enst00000525767 | sg00000175376 | eif1ad-202 | 11 | 65998389 | 66002161 | - | mRNA | protein_coding |
| 354184 | enst00000529964 | sg00000175376 | eif1ad-207 | 11 | 65998433 | 66002166 | - | mRNA | protein_coding |
| 354194 | enst00000527249 | sg00000175376 | eif1ad-206 | 11 | 65998567 | 66002176 | - | mRNA | protein_coding |
| 354246 | enst00000445560 | sg00000175334 | banf1-202 | 11 | 66002228 | 66004146 | + | mRNA | protein_coding |
| 354274 | enst00000530204 | sg00000175334 | banf1-207 | 11 | 66002256 | 66003335 | + | mRNA | protein_coding |
| 354334 | enst00000524663 | sg00000175334 | banf1-204 | 11 | 66002316 | 66003678 | + | lnc_RNA | processed_transcript |
| 354498 | enst00000524628 | sg00000175334 | banf1-203 | 11 | 66002480 | 66004146 | + | lnc_RNA | processed_transcript |
| 354521 | enst00000312175 | sg00000175334 | banf1-201 | 11 | 66002503 | 66004149 | + | mRNA | protein_coding |
| 354599 | enst00000533166 | sg00000175334 | banf1-208 | 11 | 66002581 | 66004131 | + | mRNA | protein_coding |
| 354800 | enst00000527348 | sg00000175334 | banf1-205 | 11 | 66002782 | 66003898 | + | mRNA | protein_coding |
| 355254 | enst00000528648 | sg00000175334 | banf1-206 | 11 | 66003236 | 66003893 | + | lnc_RNA | processed_transcript |
| -358574 | enst00000533192 | sg00000014138 | pola2-207 | 11 | 65287602 | 65294776 | + | lnc_RNA | retained_intron |
| -363669 | enst00000525924 | sg00000014138 | pola2-202 | 11 | 65282507 | 65305589 | + | mRNA | protein_coding |
| 364026 | enst00000312134 | sg00000175315 | cst6-201 | 11 | 66012008 | 66013505 | + | mRNA | protein_coding |
| -365708 | enst00000527618 | sg00000014138 | pola2-203 | 11 | 65280468 | 65297616 | + | lnc_RNA | retained_intron |
| 373232 | enst00000529244 | sg00000175294 | catsper1-202 | 11 | 66016753 | 66021214 | - | lnc_RNA | retained_intron |
| 378497 | enst00000312106 | sg00000175294 | catsper1-201 | 11 | 66016752 | 66026479 | - | mRNA | protein_coding |
| -379695 | enst00000532391 | sg00000014138 | pola2-205 | 11 | 65266481 | 65278826 | + | mRNA | protein_coding |
| -384214 | enst00000265465 | sg00000014138 | pola2-201 | 11 | 65261962 | 65298685 | + | mRNA | protein_coding |
| -384244 | enst00000532469 | sg00000014138 | pola2-206 | 11 | 65261932 | 65280020 | + | lnc_RNA | retained_intron |
| -384248 | enst00000649896 | sg00000285816 | ap000944.5-201 | 11 | 65261928 | 65326543 | + | mRNA | nonsense_mediated_decay |
| -384256 | enst00000527850 | sg00000014138 | pola2-204 | 11 | 65261920 | 65296498 | + | mRNA | nonsense_mediated_decay |
| -384428 | enst00000655485 | sg00000287821 | ap000944.6-201 | 11 | 65260996 | 65261748 | - | lnc_RNA | lncrna |
| 395316 | enst00000659001 | sg00000286459 | ap006287.3-201 | 11 | 66043298 | 66044381 | + | lnc_RNA | lncrna |
| 397593 | enst00000527878 | sg00000175229 | gal3st3-203 | 11 | 66042364 | 66045575 | - | mRNA | protein_coding |
| 401169 | enst00000527048 | sg00000175229 | gal3st3-202 | 11 | 66044991 | 66049151 | - | lnc_RNA | retained_intron |
| 401179 | enst00000312006 | sg00000175229 | gal3st3-201 | 11 | 66040765 | 66049161 | - | mRNA | protein_coding |
| 402747 | enst00000529577 | sg00000087365 | sf3b2-207 | 11 | 66050729 | 66052319 | + | lnc_RNA | processed_transcript |
| 402844 | enst00000534307 | sg00000087365 | sf3b2-215 | 11 | 66050826 | 66052390 | + | lnc_RNA | processed_transcript |
| 404349 | enst00000528302 | sg00000087365 | sf3b2-206 | 11 | 66052331 | 66069308 | + | mRNA | protein_coding |
| 404382 | enst00000322535 | sg00000087365 | sf3b2-201 | 11 | 66052364 | 66069308 | + | mRNA | protein_coding |
| 404383 | enst00000524627 | sg00000087365 | sf3b2-203 | 11 | 66052365 | 66058100 | + | mRNA | protein_coding |
| 404383 | enst00000533595 | sg00000087365 | sf3b2-214 | 11 | 66052365 | 66058930 | + | mRNA | protein_coding |
| 404384 | enst00000531041 | sg00000087365 | sf3b2-211 | 11 | 66052366 | 66053960 | + | lnc_RNA | retained_intron |
| 404411 | enst00000531589 | sg00000087365 | sf3b2-212 | 11 | 66052393 | 66055441 | + | lnc_RNA | retained_intron |
| 404418 | enst00000530322 | sg00000087365 | sf3b2-209 | 11 | 66052400 | 66059044 | + | mRNA | protein_coding |
| 404614 | enst00000524475 | sg00000087365 | sf3b2-202 | 11 | 66052596 | 66055305 | + | mRNA | protein_coding |
| 404706 | enst00000533421 | sg00000087365 | sf3b2-213 | 11 | 66052688 | 66055586 | + | lnc_RNA | processed_transcript |
| 407311 | enst00000526653 | sg00000087365 | sf3b2-205 | 11 | 66055293 | 66055840 | + | lnc_RNA | retained_intron |
| 409288 | enst00000525207 | sg00000087365 | sf3b2-204 | 11 | 66057270 | 66058603 | + | lnc_RNA | retained_intron |
| 410625 | enst00000529994 | sg00000087365 | sf3b2-208 | 11 | 66058607 | 66060699 | + | lnc_RNA | retained_intron |
| 412709 | enst00000530981 | sg00000087365 | sf3b2-210 | 11 | 66060691 | 66068878 | + | mRNA | protein_coding |
| 416659 | enst00000534765 | sg00000087365 | sf3b2-216 | 11 | 66064641 | 66068674 | + | lnc_RNA | retained_intron |
| 421637 | enst00000529036 | sg00000255038 | ap006287.2-201 | 11 | 66067277 | 66069619 | - | lnc_RNA | lncrna |
| 422290 | enst00000320580 | sg00000175115 | pacs1-201 | 11 | 66070272 | 66244744 | + | mRNA | protein_coding |
| 422381 | enst00000527224 | sg00000175115 | pacs1-205 | 11 | 66070363 | 66218697 | + | lnc_RNA | retained_intron |
| -425015 | enst00000534471 | sg00000197847 | slc22a20p-205 | 11 | 65221161 | 65223852 | + | lnc_RNA | retained_intron |
| -432300 | enst00000529062 | sg00000197847 | slc22a20p-203 | 11 | 65213876 | 65242355 | + | lnc_RNA | processed_transcript |
| -432303 | enst00000530038 | sg00000197847 | slc22a20p-204 | 11 | 65213873 | 65242086 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -432328 | enst00000525264 | sg00000197847 | slc22a20p-201 | 11 | 65213848 | 65226040 | + | lnc_RNA | processed_transcript |
| -432336 | enst00000525437 | sg00000197847 | slc22a20p-202 | 11 | 65213840 | 65242757 | + | lnc_RNA | processed_transcript |
| 435991 | enst00000533756 | sg00000175115 | pacs1-213 | 11 | 66083973 | 66211228 | + | mRNA | protein_coding |
| -437032 | enst00000530567 | sg00000014216 | capn1-220 | 11 | 65209144 | 65212006 | + | lnc_RNA | retained_intron |
| -437226 | enst00000533704 | sg00000014216 | capn1-225 | 11 | 65208950 | 65210392 | + | lnc_RNA | retained_intron |
| -437698 | enst00000528165 | sg00000014216 | capn1-214 | 11 | 65208478 | 65212005 | + | lnc_RNA | retained_intron |
| -439919 | enst00000525013 | sg00000014216 | capn1-203 | 11 | 65206257 | 65209383 | + | lnc_RNA | retained_intron |
| -442804 | enst00000530495 | sg00000014216 | capn1-219 | 11 | 65203372 | 65206669 | + | lnc_RNA | processed_transcript |
| 452781 | enst00000527380 | sg00000175115 | pacs1-206 | 11 | 66100763 | 66216250 | + | mRNA | protein_coding |
| -457931 | enst00000527887 | sg00000014216 | capn1-212 | 11 | 65188245 | 65188689 | + | lnc_RNA | retained_intron |
| -458235 | enst00000533079 | sg00000014216 | capn1-223 | 11 | 65187941 | 65206075 | + | lnc_RNA | retained_intron |
| -460244 | enst00000527897 | sg00000014216 | capn1-213 | 11 | 65185932 | 65187686 | + | lnc_RNA | retained_intron |
| -462840 | enst00000526468 | sg00000014216 | capn1-204 | 11 | 65183336 | 65188000 | + | mRNA | protein_coding |
| -463714 | enst00000527323 | sg00000014216 | capn1-208 | 11 | 65182462 | 65211987 | + | mRNA | protein_coding |
| -463723 | enst00000533909 | sg00000014216 | capn1-227 | 11 | 65182453 | 65183581 | + | mRNA | protein_coding |
| -463741 | enst00000527699 | sg00000014216 | capn1-210 | 11 | 65182435 | 65183592 | + | mRNA | protein_coding |
| -463741 | enst00000531068 | sg00000014216 | capn1-221 | 11 | 65182435 | 65183503 | + | mRNA | protein_coding |
| -464176 | enst00000526954 | sg00000014216 | capn1-205 | 11 | 65182000 | 65188019 | + | mRNA | nonsense_mediated_decay |
| -464238 | enst00000534373 | sg00000014216 | capn1-228 | 11 | 65181938 | 65183543 | + | mRNA | protein_coding |
| -464242 | enst00000527469 | sg00000014216 | capn1-209 | 11 | 65181934 | 65185937 | + | lnc_RNA | processed_transcript |
| -464245 | enst00000527189 | sg00000014216 | capn1-207 | 11 | 65181931 | 65186004 | + | lnc_RNA | processed_transcript |
| -464245 | enst00000532285 | sg00000014216 | capn1-222 | 11 | 65181931 | 65182890 | + | mRNA | protein_coding |
| -464257 | enst00000528739 | sg00000014216 | capn1-216 | 11 | 65181919 | 65183582 | + | lnc_RNA | processed_transcript |
| -464304 | enst00000279247 | sg00000014216 | capn1-201 | 11 | 65181872 | 65212005 | + | mRNA | protein_coding |
| -464342 | enst00000526623 | sg00000254614 | ap003068.2-202 | 11 | 65180021 | 65181834 | - | lnc_RNA | lncrna |
| -464376 | enst00000530442 | sg00000014216 | capn1-218 | 11 | 65181800 | 65183668 | + | lnc_RNA | retained_intron |
| -464431 | enst00000524773 | sg00000014216 | capn1-202 | 11 | 65181745 | 65212001 | + | mRNA | protein_coding |
| -464443 | enst00000533129 | sg00000014216 | capn1-224 | 11 | 65181733 | 65211858 | + | mRNA | protein_coding |
| -464453 | enst00000526966 | sg00000014216 | capn1-206 | 11 | 65181723 | 65185945 | + | mRNA | protein_coding |
| -464489 | enst00000527739 | sg00000014216 | capn1-211 | 11 | 65181687 | 65185945 | + | mRNA | protein_coding |
| -464982 | enst00000533820 | sg00000014216 | capn1-226 | 11 | 65181194 | 65212006 | + | mRNA | protein_coding |
| -465139 | enst00000529133 | sg00000014216 | capn1-217 | 11 | 65181037 | 65186033 | + | mRNA | protein_coding |
| -465292 | enst00000528551 | sg00000254614 | ap003068.2-201 | 11 | 65177606 | 65180884 | - | lnc_RNA | lncrna |
| -465610 | enst00000528396 | sg00000014216 | capn1-215 | 11 | 65180566 | 65185950 | + | mRNA | protein_coding |
| -469706 | enst00000534819 | sg00000255200 | pgam1p8-202 | 11 | 65174117 | 65176470 | - | lnc_RNA | processed_transcript |
| -470689 | enst00000526979 | sg00000255200 | pgam1p8-201 | 11 | 65175035 | 65175487 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| -476022 | enst00000377185 | sg00000204710 | spdyc-201 | 11 | 65170154 | 65173244 | + | mRNA | protein_coding |
| -485794 | enst00000533651 | sg00000255058 | pdcl2p2-201 | 11 | 65160194 | 65160382 | - | pseudogenic_transcript | processed_pseudogene |
| -498592 | enst00000410545 | sg00000222477 | rnu2-23p-201 | 11 | 65147584 | 65147778 | + | snRNA | snrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc