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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #34 | 6 | 1392675 | 1394273 | 1598 | 3 | 56 | 3.0718e-24 | 8.985e-22 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -2264 | enst00000611664 | sg00000275859 | mir6720-201 | 6 | 1390314 | 1390411 | - | miRNA | mirna |
| -3099 | enst00000645481 | sg00000137273 | foxf2-201 | 6 | 1389576 | 1395603 | + | mRNA | protein_coding |
| -7609 | enst00000568244 | sg00000261730 | al034346.1-201 | 6 | 1383790 | 1385066 | - | lnc_RNA | lncrna |
| -68653 | enst00000627866 | sg00000281809 | linc01394-201 | 6 | 1321698 | 1324022 | - | lnc_RNA | lncrna |
| -80577 | enst00000296839 | sg00000164379 | foxq1-201 | 6 | 1312098 | 1314758 | + | mRNA | protein_coding |
| 113049 | enst00000466002 | sg00000243439 | rn7sl352p-201 | 6 | 1507322 | 1507598 | + | ncRNA | misc_rna |
| 121016 | enst00000404600 | sg00000218027 | al512329.1-201 | 6 | 1513698 | 1515289 | - | pseudogenic_transcript | processed_pseudogene |
| 134638 | enst00000607350 | sg00000272279 | al512329.2-201 | 6 | 1528364 | 1528911 | - | lnc_RNA | lncrna |
| 207381 | enst00000652712 | sg00000280916 | foxcut-202 | 6 | 1601654 | 1607354 | + | lnc_RNA | lncrna |
| 211258 | enst00000628509 | sg00000280916 | foxcut-201 | 6 | 1605531 | 1606079 | + | lnc_RNA | lncrna |
| 215642 | enst00000645831 | sg00000054598 | foxc1-201 | 6 | 1609915 | 1613897 | + | mRNA | protein_coding |
| 230467 | enst00000476972 | sg00000112699 | gmds-204 | 6 | 1623806 | 1624740 | - | lnc_RNA | processed_transcript |
| 231228 | enst00000467288 | sg00000112699 | gmds-203 | 6 | 1623806 | 1625501 | - | lnc_RNA | processed_transcript |
| 231915 | enst00000486793 | sg00000112699 | gmds-205 | 6 | 1623806 | 1626188 | - | lnc_RNA | processed_transcript |
| -281308 | enst00000660745 | sg00000286324 | al033381.3-201 | 6 | 1111367 | 1114329 | + | lnc_RNA | lncrna |
| -291275 | enst00000664781 | sg00000286785 | linc01622-206 | 6 | 998278 | 1101400 | - | lnc_RNA | lncrna |
| -291276 | enst00000661526 | sg00000286785 | linc01622-203 | 6 | 1096465 | 1101399 | - | lnc_RNA | lncrna |
| -291285 | enst00000668813 | sg00000286785 | linc01622-207 | 6 | 1029297 | 1101390 | - | lnc_RNA | lncrna |
| -291289 | enst00000662378 | sg00000286785 | linc01622-204 | 6 | 961000 | 1101386 | - | lnc_RNA | lncrna |
| -291294 | enst00000663447 | sg00000286785 | linc01622-205 | 6 | 1098829 | 1101381 | - | lnc_RNA | lncrna |
| -291303 | enst00000655659 | sg00000286785 | linc01622-202 | 6 | 958323 | 1101372 | - | lnc_RNA | lncrna |
| -292406 | enst00000612554 | sg00000286785 | linc01622-201 | 6 | 958338 | 1100269 | - | lnc_RNA | lncrna |
| -312746 | enst00000314040 | sg00000176515 | al033381.1-201 | 6 | 1079929 | 1104946 | + | lnc_RNA | lncrna |
| 332204 | enst00000533279 | sg00000112699 | gmds-210 | 6 | 1679172 | 1726477 | - | lnc_RNA | processed_transcript |
| -365450 | enst00000603854 | sg00000270937 | al033381.2-201 | 6 | 1026494 | 1027225 | - | lnc_RNA | lncrna |
| -388955 | enst00000669177 | sg00000286785 | linc01622-208 | 6 | 997024 | 1003720 | - | lnc_RNA | lncrna |
| -483669 | enst00000620188 | sg00000276687 | al356130.1-201 | 6 | 905445 | 909006 | - | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc