pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
---|---|---|---|---|---|---|---|---|
#42 | 7 | 989495 | 990877 | 1382 | 3 | 54 | 9.90347e-23 | 2.345e-20 |
distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
---|---|---|---|---|---|---|---|---|---|
-2838 | enst00000415893 | sg00000073067 | cyp2w1-203 | 7 | 986657 | 988804 | + | mRNA | protein_coding |
-3081 | enst00000468456 | sg00000073067 | cyp2w1-205 | 7 | 986414 | 987380 | + | lnc_RNA | retained_intron |
-3094 | enst00000462453 | sg00000073067 | cyp2w1-204 | 7 | 986401 | 987275 | + | lnc_RNA | retained_intron |
-6137 | enst00000340150 | sg00000073067 | cyp2w1-202 | 7 | 983358 | 989640 | + | mRNA | protein_coding |
-6314 | enst00000308919 | sg00000073067 | cyp2w1-201 | 7 | 983181 | 989640 | + | mRNA | protein_coding |
-13946 | enst00000457254 | sg00000240230 | cox19-202 | 7 | 898778 | 975549 | - | mRNA | nonsense_mediated_decay |
-13946 | enst00000344111 | sg00000240230 | cox19-201 | 7 | 964852 | 975549 | - | mRNA | protein_coding |
-13946 | enst00000466146 | sg00000240230 | cox19-203 | 7 | 972701 | 975549 | - | lnc_RNA | retained_intron |
-14379 | enst00000466853 | sg00000240230 | cox19-204 | 7 | 972942 | 975116 | - | lnc_RNA | retained_intron |
32149 | enst00000362153 | sg00000199023 | mir339-201 | 7 | 1022933 | 1023026 | - | miRNA | mirna |
-34088 | enst00000539900 | sg00000105963 | adap1-216 | 7 | 897901 | 955407 | - | mRNA | protein_coding |
-34089 | enst00000435943 | sg00000105963 | adap1-202 | 7 | 904247 | 955406 | - | mRNA | protein_coding |
-34145 | enst00000477906 | sg00000105963 | adap1-210 | 7 | 904187 | 955350 | - | lnc_RNA | processed_transcript |
-34798 | enst00000649206 | sg00000105963 | adap1-219 | 7 | 897903 | 954697 | - | mRNA | protein_coding |
-34815 | enst00000265846 | sg00000105963 | adap1-201 | 7 | 897900 | 954680 | - | mRNA | protein_coding |
37462 | enst00000412051 | sg00000146540 | c7orf50-204 | 7 | 997016 | 1028339 | - | mRNA | protein_coding |
37475 | enst00000465681 | sg00000146540 | c7orf50-206 | 7 | 1024502 | 1028352 | - | lnc_RNA | retained_intron |
38148 | enst00000418941 | sg00000225146 | ac073957.1-201 | 7 | 1029025 | 1043891 | + | lnc_RNA | lncrna |
-43679 | enst00000463358 | sg00000105963 | adap1-209 | 7 | 904152 | 945816 | - | lnc_RNA | processed_transcript |
-43679 | enst00000611167 | sg00000105963 | adap1-217 | 7 | 897901 | 945816 | - | mRNA | protein_coding |
53669 | enst00000444847 | sg00000164849 | gpr146-203 | 7 | 1044546 | 1059261 | + | mRNA | protein_coding |
53728 | enst00000481403 | sg00000164849 | gpr146-205 | 7 | 1044605 | 1045816 | + | lnc_RNA | processed_transcript |
-54315 | enst00000454383 | sg00000105963 | adap1-208 | 7 | 900142 | 935180 | - | mRNA | protein_coding |
-61981 | enst00000453823 | sg00000105963 | adap1-207 | 7 | 900533 | 927514 | - | mRNA | protein_coding |
-62279 | enst00000449296 | sg00000105963 | adap1-205 | 7 | 897901 | 927216 | - | mRNA | protein_coding |
-62279 | enst00000446141 | sg00000105963 | adap1-204 | 7 | 897909 | 927216 | - | mRNA | protein_coding |
-62440 | enst00000495686 | sg00000105963 | adap1-214 | 7 | 919968 | 927055 | - | lnc_RNA | retained_intron |
64402 | enst00000474396 | sg00000164849 | gpr146-204 | 7 | 1055279 | 1056552 | + | lnc_RNA | processed_transcript |
64408 | enst00000397095 | sg00000164849 | gpr146-201 | 7 | 1055285 | 1059261 | + | mRNA | protein_coding |
64429 | enst00000444428 | sg00000146540 | c7orf50-205 | 7 | 997607 | 1055306 | - | mRNA | protein_coding |
65780 | enst00000427680 | sg00000164849 | gpr146-202 | 7 | 1056657 | 1057631 | + | mRNA | protein_coding |
-66157 | enst00000488527 | sg00000105963 | adap1-213 | 7 | 904247 | 923338 | - | lnc_RNA | processed_transcript |
68384 | enst00000549241 | sg00000257607 | ac073957.2-201 | 7 | 1055360 | 1059261 | - | lnc_RNA | lncrna |
-68606 | enst00000437486 | sg00000105963 | adap1-203 | 7 | 899465 | 920889 | - | mRNA | protein_coding |
-68606 | enst00000617043 | sg00000105963 | adap1-218 | 7 | 897901 | 920889 | - | mRNA | protein_coding |
83573 | enst00000449721 | sg00000224079 | ac091729.1-201 | 7 | 1074450 | 1078036 | + | lnc_RNA | lncrna |
-83879 | enst00000478000 | sg00000105963 | adap1-211 | 7 | 897910 | 905616 | - | lnc_RNA | retained_intron |
-84357 | enst00000481406 | sg00000105963 | adap1-212 | 7 | 903957 | 905138 | - | lnc_RNA | retained_intron |
-84418 | enst00000453175 | sg00000105963 | adap1-206 | 7 | 898917 | 905077 | - | mRNA | protein_coding |
-88096 | enst00000495809 | sg00000105963 | adap1-215 | 7 | 897945 | 901399 | - | lnc_RNA | retained_intron |
89986 | enst00000415656 | sg00000226291 | ac091729.2-201 | 7 | 1080863 | 1082178 | + | lnc_RNA | lncrna |
91331 | enst00000401670 | sg00000164850 | gper1-204 | 7 | 1082208 | 1092881 | + | mRNA | protein_coding |
95930 | enst00000413368 | sg00000164850 | gper1-205 | 7 | 1086807 | 1091949 | + | mRNA | protein_coding |
95930 | enst00000397092 | sg00000164850 | gper1-203 | 7 | 1086807 | 1093815 | + | mRNA | protein_coding |
95999 | enst00000297469 | sg00000164850 | gper1-201 | 7 | 1086876 | 1093815 | + | mRNA | protein_coding |
-97195 | enst00000464468 | sg00000239857 | get4-206 | 7 | 892300 | 895658 | + | lnc_RNA | retained_intron |
97236 | enst00000397088 | sg00000164850 | gper1-202 | 7 | 1088113 | 1093810 | + | mRNA | protein_coding |
100751 | enst00000617001 | sg00000164850 | gper1-206 | 7 | 1091628 | 1093809 | + | mRNA | protein_coding |
-102009 | enst00000483469 | sg00000239857 | get4-207 | 7 | 887486 | 892474 | + | lnc_RNA | retained_intron |
102061 | enst00000619052 | sg00000164850 | gper1-207 | 7 | 1092938 | 1093741 | + | mRNA | protein_coding |
-102462 | enst00000426056 | sg00000239857 | get4-204 | 7 | 887033 | 891054 | + | mRNA | protein_coding |
-102948 | enst00000609998 | sg00000273151 | ac073957.3-201 | 7 | 879790 | 886547 | - | lnc_RNA | lncrna |
-105471 | enst00000441491 | sg00000239857 | get4-205 | 7 | 884024 | 887519 | + | mRNA | protein_coding |
-105952 | enst00000407192 | sg00000239857 | get4-202 | 7 | 883543 | 896436 | + | mRNA | protein_coding |
-111590 | enst00000412734 | sg00000239857 | get4-203 | 7 | 877905 | 891066 | + | mRNA | protein_coding |
-112941 | enst00000265857 | sg00000239857 | get4-201 | 7 | 876554 | 896436 | + | mRNA | protein_coding |
-121021 | enst00000497943 | sg00000164828 | sun1-235 | 7 | 868474 | 874902 | + | lnc_RNA | retained_intron |
136511 | enst00000488073 | sg00000146540 | c7orf50-207 | 7 | 997494 | 1127388 | - | lnc_RNA | processed_transcript |
-137248 | enst00000475971 | sg00000164828 | sun1-229 | 7 | 852247 | 874902 | + | lnc_RNA | retained_intron |
-137303 | enst00000459810 | sg00000164828 | sun1-223 | 7 | 852192 | 852902 | + | lnc_RNA | retained_intron |
-137545 | enst00000457861 | sg00000164828 | sun1-222 | 7 | 851950 | 896435 | + | mRNA | nonsense_mediated_decay |
-137945 | enst00000463848 | sg00000164828 | sun1-224 | 7 | 851550 | 852773 | + | lnc_RNA | retained_intron |
-138328 | enst00000488628 | sg00000164828 | sun1-233 | 7 | 851167 | 852824 | + | lnc_RNA | retained_intron |
-139678 | enst00000480475 | sg00000164828 | sun1-231 | 7 | 849817 | 852878 | + | lnc_RNA | retained_intron |
-139694 | enst00000464442 | sg00000164828 | sun1-225 | 7 | 849801 | 852907 | + | lnc_RNA | retained_intron |
-140887 | enst00000433212 | sg00000164828 | sun1-213 | 7 | 848608 | 874902 | + | mRNA | protein_coding |
-146125 | enst00000429178 | sg00000164828 | sun1-212 | 7 | 843370 | 874899 | + | mRNA | protein_coding |
-146154 | enst00000419312 | sg00000164828 | sun1-207 | 7 | 843341 | 851481 | + | mRNA | protein_coding |
-146574 | enst00000471349 | sg00000164828 | sun1-228 | 7 | 842921 | 848494 | + | lnc_RNA | retained_intron |
147370 | enst00000397098 | sg00000146540 | c7orf50-202 | 7 | 997006 | 1138247 | - | mRNA | protein_coding |
147380 | enst00000357429 | sg00000146540 | c7orf50-201 | 7 | 996986 | 1138257 | - | mRNA | protein_coding |
147380 | enst00000397100 | sg00000146540 | c7orf50-203 | 7 | 996987 | 1138257 | - | mRNA | protein_coding |
147383 | enst00000491163 | sg00000146540 | c7orf50-208 | 7 | 997633 | 1138260 | - | mRNA | protein_coding |
-147583 | enst00000477950 | sg00000164828 | sun1-230 | 7 | 841912 | 843669 | + | lnc_RNA | retained_intron |
-147679 | enst00000493681 | sg00000164828 | sun1-234 | 7 | 841816 | 848421 | + | lnc_RNA | retained_intron |
-150699 | enst00000450881 | sg00000164828 | sun1-218 | 7 | 838796 | 852651 | + | mRNA | protein_coding |
-156540 | enst00000469755 | sg00000164828 | sun1-227 | 7 | 832955 | 842073 | + | lnc_RNA | processed_transcript |
-156988 | enst00000483996 | sg00000164828 | sun1-232 | 7 | 832507 | 839180 | + | lnc_RNA | retained_intron |
-156990 | enst00000467483 | sg00000164828 | sun1-226 | 7 | 832505 | 843834 | + | lnc_RNA | retained_intron |
-156990 | enst00000425407 | sg00000164828 | sun1-210 | 7 | 832505 | 874920 | + | mRNA | protein_coding |
-156992 | enst00000403868 | sg00000164828 | sun1-204 | 7 | 832503 | 843818 | + | mRNA | protein_coding |
-156994 | enst00000405266 | sg00000164828 | sun1-205 | 7 | 832501 | 874900 | + | mRNA | protein_coding |
-156994 | enst00000340926 | sg00000164828 | sun1-201 | 7 | 832501 | 850767 | + | lnc_RNA | retained_intron |
-156994 | enst00000413171 | sg00000164828 | sun1-206 | 7 | 832501 | 874902 | + | lnc_RNA | retained_intron |
-157019 | enst00000401592 | sg00000164828 | sun1-203 | 7 | 832476 | 874934 | + | mRNA | protein_coding |
-157573 | enst00000421580 | sg00000164828 | sun1-208 | 7 | 831922 | 842019 | + | mRNA | protein_coding |
-158565 | enst00000457598 | sg00000164828 | sun1-221 | 7 | 830930 | 842035 | + | mRNA | protein_coding |
164800 | enst00000471448 | sg00000178381 | zfand2a-204 | 7 | 1152906 | 1155677 | - | lnc_RNA | retained_intron |
166855 | enst00000574135 | sg00000178381 | zfand2a-207 | 7 | 1152906 | 1157732 | - | mRNA | protein_coding |
169276 | enst00000397083 | sg00000178381 | zfand2a-202 | 7 | 1152906 | 1160153 | - | mRNA | protein_coding |
169301 | enst00000401903 | sg00000178381 | zfand2a-203 | 7 | 1152071 | 1160178 | - | mRNA | protein_coding |
169319 | enst00000316495 | sg00000178381 | zfand2a-201 | 7 | 1152907 | 1160196 | - | mRNA | protein_coding |
169342 | enst00000484977 | sg00000178381 | zfand2a-206 | 7 | 1157023 | 1160219 | - | lnc_RNA | retained_intron |
169497 | enst00000423008 | sg00000229043 | ac091729.3-201 | 7 | 1160374 | 1165580 | + | lnc_RNA | lncrna |
169555 | enst00000660500 | sg00000229043 | ac091729.3-202 | 7 | 1160432 | 1165580 | + | lnc_RNA | lncrna |
169555 | enst00000662926 | sg00000229043 | ac091729.3-203 | 7 | 1160432 | 1165607 | + | lnc_RNA | lncrna |
169617 | enst00000422230 | sg00000229043 | ac091729.3-204 | 7 | 1160494 | 1164575 | + | lnc_RNA | lncrna |
169704 | enst00000659975 | sg00000229043 | ac091729.3-205 | 7 | 1160581 | 1165212 | + | lnc_RNA | lncrna |
169714 | enst00000413706 | sg00000229043 | ac091729.3-206 | 7 | 1160591 | 1163491 | + | lnc_RNA | lncrna |
169719 | enst00000655003 | sg00000229043 | ac091729.3-207 | 7 | 1160596 | 1165607 | + | lnc_RNA | lncrna |
169882 | enst00000478137 | sg00000178381 | zfand2a-205 | 7 | 1160026 | 1160759 | - | lnc_RNA | processed_transcript |
-172629 | enst00000424128 | sg00000164828 | sun1-209 | 7 | 816866 | 838986 | + | mRNA | protein_coding |
-172740 | enst00000439679 | sg00000164828 | sun1-215 | 7 | 816755 | 842086 | + | mRNA | protein_coding |
-172852 | enst00000440380 | sg00000164828 | sun1-216 | 7 | 816643 | 838986 | + | mRNA | protein_coding |
-172872 | enst00000435699 | sg00000164828 | sun1-214 | 7 | 816623 | 843385 | + | mRNA | protein_coding |
-172880 | enst00000427969 | sg00000164828 | sun1-211 | 7 | 816615 | 842568 | + | lnc_RNA | processed_transcript |
-172880 | enst00000457378 | sg00000164828 | sun1-220 | 7 | 816615 | 843872 | + | mRNA | protein_coding |
-172880 | enst00000389574 | sg00000164828 | sun1-202 | 7 | 816615 | 874902 | + | mRNA | protein_coding |
-172880 | enst00000452783 | sg00000164828 | sun1-219 | 7 | 816615 | 874920 | + | mRNA | protein_coding |
-172880 | enst00000450538 | sg00000164828 | sun1-217 | 7 | 816615 | 843006 | + | lnc_RNA | processed_transcript |
-209591 | enst00000461576 | sg00000164818 | dnaaf5-206 | 7 | 779904 | 785573 | + | lnc_RNA | retained_intron |
-211313 | enst00000486546 | sg00000164818 | dnaaf5-207 | 7 | 778182 | 779984 | + | lnc_RNA | processed_transcript |
-221020 | enst00000403952 | sg00000164818 | dnaaf5-202 | 7 | 768475 | 786044 | + | mRNA | protein_coding |
-225588 | enst00000491496 | sg00000164818 | dnaaf5-208 | 7 | 763907 | 772975 | + | lnc_RNA | retained_intron |
241995 | enst00000316333 | sg00000164853 | uncx-201 | 7 | 1232872 | 1237326 | + | mRNA | protein_coding |
-261845 | enst00000403562 | sg00000188191 | prkar1b-203 | 7 | 549742 | 727650 | - | mRNA | protein_coding |
-262154 | enst00000417852 | sg00000188191 | prkar1b-206 | 7 | 607396 | 727341 | - | mRNA | protein_coding |
-262214 | enst00000537384 | sg00000188191 | prkar1b-211 | 7 | 549198 | 727281 | - | mRNA | protein_coding |
-262240 | enst00000440747 | sg00000164818 | dnaaf5-205 | 7 | 727255 | 786031 | + | mRNA | protein_coding |
-262243 | enst00000438961 | sg00000164818 | dnaaf5-204 | 7 | 727252 | 750953 | + | lnc_RNA | processed_transcript |
-262258 | enst00000488474 | sg00000188191 | prkar1b-210 | 7 | 696713 | 727237 | - | lnc_RNA | processed_transcript |
-262276 | enst00000437419 | sg00000164818 | dnaaf5-203 | 7 | 727219 | 756792 | + | mRNA | protein_coding |
-262518 | enst00000478198 | sg00000188191 | prkar1b-209 | 7 | 716619 | 726977 | - | lnc_RNA | processed_transcript |
-262796 | enst00000297440 | sg00000164818 | dnaaf5-201 | 7 | 726699 | 786475 | + | mRNA | protein_coding |
-276288 | enst00000406797 | sg00000188191 | prkar1b-204 | 7 | 549198 | 713207 | - | mRNA | protein_coding |
-276426 | enst00000456696 | sg00000188191 | prkar1b-208 | 7 | 680556 | 713069 | - | mRNA | protein_coding |
276476 | enst00000453798 | sg00000233082 | ac073094.1-201 | 7 | 1267353 | 1269267 | + | lnc_RNA | lncrna |
-276555 | enst00000544935 | sg00000188191 | prkar1b-212 | 7 | 549197 | 712940 | - | mRNA | protein_coding |
-276555 | enst00000430040 | sg00000188191 | prkar1b-207 | 7 | 579256 | 712940 | - | mRNA | protein_coding |
-276923 | enst00000360274 | sg00000188191 | prkar1b-201 | 7 | 549750 | 712572 | - | mRNA | protein_coding |
-297701 | enst00000414568 | sg00000188191 | prkar1b-205 | 7 | 596180 | 691794 | - | mRNA | protein_coding |
-386310 | enst00000429872 | sg00000237181 | ac147651.4-201 | 7 | 603185 | 608482 | + | lnc_RNA | lncrna |
-386812 | enst00000400758 | sg00000188191 | prkar1b-202 | 7 | 550270 | 602683 | - | mRNA | protein_coding |
-427537 | enst00000453149 | sg00000229380 | ac147651.2-201 | 7 | 561958 | 565619 | + | lnc_RNA | lncrna |
446734 | enst00000493998 | sg00000164877 | micall2-214 | 7 | 1428465 | 1437611 | - | lnc_RNA | retained_intron |
447036 | enst00000470807 | sg00000164877 | micall2-206 | 7 | 1434366 | 1437913 | - | lnc_RNA | retained_intron |
447588 | enst00000460198 | sg00000164877 | micall2-203 | 7 | 1437536 | 1438465 | - | lnc_RNA | retained_intron |
448085 | enst00000471899 | sg00000164877 | micall2-207 | 7 | 1434366 | 1438962 | - | lnc_RNA | processed_transcript |
448281 | enst00000487187 | sg00000164877 | micall2-212 | 7 | 1436743 | 1439158 | - | lnc_RNA | retained_intron |
448554 | enst00000496184 | sg00000164877 | micall2-215 | 7 | 1428479 | 1439431 | - | lnc_RNA | retained_intron |
448994 | enst00000479007 | sg00000164877 | micall2-209 | 7 | 1434366 | 1439871 | - | lnc_RNA | retained_intron |
449145 | enst00000467783 | sg00000164877 | micall2-205 | 7 | 1434359 | 1440022 | - | lnc_RNA | retained_intron |
449850 | enst00000487156 | sg00000164877 | micall2-211 | 7 | 1438925 | 1440727 | - | lnc_RNA | retained_intron |
450647 | enst00000467394 | sg00000164877 | micall2-204 | 7 | 1434360 | 1441524 | - | lnc_RNA | retained_intron |
457075 | enst00000482839 | sg00000164877 | micall2-210 | 7 | 1445071 | 1447952 | - | lnc_RNA | retained_intron |
457156 | enst00000490608 | sg00000164877 | micall2-213 | 7 | 1446657 | 1448033 | - | lnc_RNA | retained_intron |
459659 | enst00000413446 | sg00000164877 | micall2-202 | 7 | 1434366 | 1450536 | - | mRNA | nonsense_mediated_decay |
-466922 | enst00000656962 | sg00000223855 | ac147651.1-204 | 7 | 522573 | 525232 | + | lnc_RNA | lncrna |
-466941 | enst00000662957 | sg00000223855 | ac147651.1-203 | 7 | 522554 | 525238 | + | lnc_RNA | lncrna |
-466953 | enst00000663680 | sg00000223855 | ac147651.1-202 | 7 | 522542 | 525233 | + | lnc_RNA | lncrna |
468488 | enst00000472100 | sg00000164877 | micall2-208 | 7 | 1428619 | 1459365 | - | lnc_RNA | retained_intron |
468593 | enst00000297508 | sg00000164877 | micall2-201 | 7 | 1434359 | 1459470 | - | mRNA | protein_coding |
469060 | enst00000445345 | sg00000225981 | ac102953.1-201 | 7 | 1459937 | 1464008 | + | lnc_RNA | lncrna |
-469104 | enst00000452622 | sg00000223855 | ac147651.1-201 | 7 | 520391 | 525232 | + | lnc_RNA | lncrna |
-469199 | enst00000405692 | sg00000197461 | pdgfa-204 | 7 | 512357 | 520296 | - | mRNA | protein_coding |
-469287 | enst00000426681 | sg00000197461 | pdgfa-205 | 7 | 512445 | 520208 | - | lnc_RNA | processed_transcript |
-470086 | enst00000402802 | sg00000197461 | pdgfa-203 | 7 | 497258 | 519409 | - | mRNA | protein_coding |
-470101 | enst00000354513 | sg00000197461 | pdgfa-201 | 7 | 498309 | 519394 | - | mRNA | protein_coding |
-470987 | enst00000400761 | sg00000197461 | pdgfa-202 | 7 | 498493 | 518508 | - | mRNA | protein_coding |
-476028 | enst00000482462 | sg00000197461 | pdgfa-206 | 7 | 500778 | 513467 | - | lnc_RNA | retained_intron |
476645 | enst00000609755 | sg00000273230 | ac102953.2-201 | 7 | 1464497 | 1467522 | - | lnc_RNA | lncrna |
480884 | enst00000479671 | sg00000164880 | ints1-203 | 7 | 1471171 | 1471761 | - | lnc_RNA | retained_intron |
482248 | enst00000493446 | sg00000164880 | ints1-206 | 7 | 1470478 | 1473125 | - | lnc_RNA | processed_transcript |
482273 | enst00000483196 | sg00000164880 | ints1-205 | 7 | 1471133 | 1473150 | - | mRNA | protein_coding |
485273 | enst00000482994 | sg00000164880 | ints1-204 | 7 | 1474200 | 1476150 | - | lnc_RNA | retained_intron |
-493377 | enst00000434541 | sg00000234471 | ac147651.3-201 | 7 | 484107 | 496118 | - | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc