PycoMeth
Documentation
GitHub
CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #46 | 12 | 57726081 | 57727919 | 1838 | 3 | 61 | 2.14876e-22 | 4.64552e-20 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000542466 | sg00000255737 | agap2-as1-201 | 12 | 57726271 | 57728356 | + | lnc_RNA | lncrna |
| 3910 | enst00000549129 | sg00000135439 | agap2-204 | 12 | 57730383 | 57731829 | - | mRNA | protein_coding |
| -4571 | enst00000549477 | sg00000257342 | ac025165.2-201 | 12 | 57694132 | 57721510 | - | lnc_RNA | lncrna |
| -5870 | enst00000546916 | sg00000135506 | os9-208 | 12 | 57720211 | 57721503 | + | lnc_RNA | retained_intron |
| -9748 | enst00000550202 | sg00000135506 | os9-212 | 12 | 57716333 | 57719182 | + | lnc_RNA | retained_intron |
| 9917 | enst00000328568 | sg00000135439 | agap2-202 | 12 | 57725197 | 57737836 | - | mRNA | protein_coding |
| 10094 | enst00000553221 | sg00000135452 | tspan31-214 | 12 | 57738013 | 57747062 | + | lnc_RNA | processed_transcript |
| -10104 | enst00000550699 | sg00000135506 | os9-215 | 12 | 57715977 | 57718052 | + | lnc_RNA | retained_intron |
| 10327 | enst00000547588 | sg00000135439 | agap2-203 | 12 | 57726552 | 57738246 | - | mRNA | protein_coding |
| -10375 | enst00000550438 | sg00000135506 | os9-214 | 12 | 57715706 | 57718168 | + | lnc_RNA | retained_intron |
| 11817 | enst00000547311 | sg00000135452 | tspan31-204 | 12 | 57739736 | 57746210 | + | lnc_RNA | processed_transcript |
| 11947 | enst00000550528 | sg00000135452 | tspan31-210 | 12 | 57739866 | 57746436 | + | lnc_RNA | processed_transcript |
| 14238 | enst00000257897 | sg00000135439 | agap2-201 | 12 | 57723761 | 57742157 | - | mRNA | protein_coding |
| 17104 | enst00000547992 | sg00000135452 | tspan31-206 | 12 | 57745023 | 57750211 | + | mRNA | protein_coding |
| 17120 | enst00000552816 | sg00000135452 | tspan31-212 | 12 | 57745039 | 57747025 | + | mRNA | protein_coding |
| 17120 | enst00000553089 | sg00000135452 | tspan31-213 | 12 | 57745039 | 57747178 | + | mRNA | nonsense_mediated_decay |
| 17120 | enst00000257910 | sg00000135452 | tspan31-201 | 12 | 57745039 | 57750219 | + | mRNA | protein_coding |
| 17131 | enst00000549052 | sg00000135452 | tspan31-209 | 12 | 57745050 | 57747656 | + | mRNA | nonsense_mediated_decay |
| 17139 | enst00000546993 | sg00000135452 | tspan31-203 | 12 | 57745058 | 57748205 | + | lnc_RNA | retained_intron |
| 17147 | enst00000547472 | sg00000135452 | tspan31-205 | 12 | 57745066 | 57747292 | + | mRNA | protein_coding |
| 17150 | enst00000548093 | sg00000135452 | tspan31-207 | 12 | 57745069 | 57746394 | + | lnc_RNA | processed_transcript |
| 17463 | enst00000548167 | sg00000135452 | tspan31-208 | 12 | 57745382 | 57747066 | + | mRNA | protein_coding |
| 17538 | enst00000550791 | sg00000135452 | tspan31-211 | 12 | 57745457 | 57748218 | + | lnc_RNA | retained_intron |
| 18748 | enst00000546922 | sg00000135452 | tspan31-202 | 12 | 57746667 | 57747855 | + | lnc_RNA | retained_intron |
| 20763 | enst00000638110 | sg00000283621 | mir6759-201 | 12 | 57748618 | 57748682 | - | miRNA | mirna |
| 21876 | enst00000552713 | sg00000135446 | cdk4-213 | 12 | 57748411 | 57749795 | - | lnc_RNA | retained_intron |
| 23958 | enst00000552254 | sg00000135446 | cdk4-211 | 12 | 57750679 | 57751877 | - | mRNA | protein_coding |
| 24196 | enst00000547853 | sg00000135446 | cdk4-205 | 12 | 57751712 | 57752115 | - | mRNA | protein_coding |
| 24357 | enst00000547281 | sg00000135446 | cdk4-204 | 12 | 57749220 | 57752276 | - | mRNA | protein_coding |
| 24376 | enst00000550419 | sg00000135446 | cdk4-207 | 12 | 57749234 | 57752295 | - | mRNA | nonsense_mediated_decay |
| 24391 | enst00000257904 | sg00000135446 | cdk4-201 | 12 | 57747727 | 57752310 | - | mRNA | protein_coding |
| 24403 | enst00000546489 | sg00000135446 | cdk4-203 | 12 | 57748591 | 57752322 | - | mRNA | protein_coding |
| 24403 | enst00000552388 | sg00000135446 | cdk4-212 | 12 | 57750934 | 57752322 | - | mRNA | protein_coding |
| 24407 | enst00000553237 | sg00000135446 | cdk4-215 | 12 | 57748520 | 57752326 | - | mRNA | nonsense_mediated_decay |
| 24414 | enst00000551888 | sg00000135446 | cdk4-210 | 12 | 57749191 | 57752333 | - | lnc_RNA | processed_transcript |
| 24430 | enst00000551800 | sg00000135446 | cdk4-209 | 12 | 57750669 | 57752349 | - | mRNA | protein_coding |
| 24434 | enst00000549606 | sg00000135446 | cdk4-206 | 12 | 57748426 | 57752353 | - | mRNA | protein_coding |
| 24445 | enst00000551706 | sg00000135446 | cdk4-208 | 12 | 57750827 | 57752364 | - | lnc_RNA | retained_intron |
| 24528 | enst00000312990 | sg00000135446 | cdk4-202 | 12 | 57747727 | 57752447 | - | mRNA | protein_coding |
| 27184 | enst00000266643 | sg00000139266 | marchf9-201 | 12 | 57755103 | 57760411 | + | mRNA | protein_coding |
| 27809 | enst00000552279 | sg00000139266 | marchf9-203 | 12 | 57755728 | 57757600 | + | lnc_RNA | retained_intron |
| 28094 | enst00000552862 | sg00000135446 | cdk4-214 | 12 | 57751215 | 57756013 | - | mRNA | protein_coding |
| 29568 | enst00000548358 | sg00000139266 | marchf9-202 | 12 | 57757487 | 57759416 | + | mRNA | protein_coding |
| -30585 | enst00000549307 | sg00000135506 | os9-210 | 12 | 57695496 | 57721557 | + | lnc_RNA | retained_intron |
| -31921 | enst00000552423 | sg00000135506 | os9-221 | 12 | 57694160 | 57696030 | + | mRNA | nonsense_mediated_decay |
| -31927 | enst00000550793 | sg00000135506 | os9-216 | 12 | 57694154 | 57695996 | + | lnc_RNA | retained_intron |
| -31934 | enst00000553208 | sg00000135506 | os9-223 | 12 | 57694147 | 57715951 | + | lnc_RNA | retained_intron |
| -31934 | enst00000389142 | sg00000135506 | os9-203 | 12 | 57694147 | 57721557 | + | mRNA | protein_coding |
| -31935 | enst00000550372 | sg00000135506 | os9-213 | 12 | 57694146 | 57715847 | + | mRNA | protein_coding |
| -31936 | enst00000551035 | sg00000135506 | os9-218 | 12 | 57694145 | 57721395 | + | mRNA | protein_coding |
| -31936 | enst00000257966 | sg00000135506 | os9-201 | 12 | 57694145 | 57721555 | + | mRNA | protein_coding |
| -31936 | enst00000435406 | sg00000135506 | os9-206 | 12 | 57694145 | 57721555 | + | mRNA | protein_coding |
| -31936 | enst00000413095 | sg00000135506 | os9-205 | 12 | 57694145 | 57721331 | + | mRNA | protein_coding |
| -31936 | enst00000389146 | sg00000135506 | os9-204 | 12 | 57694145 | 57721024 | + | mRNA | protein_coding |
| -31938 | enst00000439210 | sg00000135506 | os9-207 | 12 | 57694143 | 57721219 | + | mRNA | protein_coding |
| -31938 | enst00000551285 | sg00000135506 | os9-219 | 12 | 57694143 | 57696078 | + | mRNA | nonsense_mediated_decay |
| -31942 | enst00000552787 | sg00000135506 | os9-222 | 12 | 57694139 | 57716181 | + | mRNA | nonsense_mediated_decay |
| -31944 | enst00000547079 | sg00000135506 | os9-209 | 12 | 57694137 | 57719061 | + | mRNA | protein_coding |
| -31949 | enst00000550848 | sg00000135506 | os9-217 | 12 | 57694132 | 57696278 | + | mRNA | nonsense_mediated_decay |
| -31949 | enst00000315970 | sg00000135506 | os9-202 | 12 | 57694132 | 57721557 | + | mRNA | protein_coding |
| -32058 | enst00000549897 | sg00000135506 | os9-211 | 12 | 57694023 | 57695148 | + | lnc_RNA | retained_intron |
| -32126 | enst00000552285 | sg00000135506 | os9-220 | 12 | 57693955 | 57720998 | + | mRNA | protein_coding |
| 37766 | enst00000546567 | sg00000111012 | cyp27b1-203 | 12 | 57764137 | 57765685 | - | mRNA | protein_coding |
| 37766 | enst00000547451 | sg00000111012 | cyp27b1-206 | 12 | 57764544 | 57765685 | - | lnc_RNA | retained_intron |
| 38537 | enst00000546496 | sg00000111012 | cyp27b1-202 | 12 | 57765470 | 57766456 | - | lnc_RNA | processed_transcript |
| 38592 | enst00000552186 | sg00000111012 | cyp27b1-207 | 12 | 57765457 | 57766511 | - | lnc_RNA | retained_intron |
| 39159 | enst00000228606 | sg00000111012 | cyp27b1-201 | 12 | 57762334 | 57767078 | - | mRNA | protein_coding |
| 39176 | enst00000547344 | sg00000111012 | cyp27b1-205 | 12 | 57762334 | 57767095 | - | lnc_RNA | retained_intron |
| 41067 | enst00000546609 | sg00000111012 | cyp27b1-204 | 12 | 57765011 | 57768986 | - | mRNA | protein_coding |
| 41736 | enst00000547653 | sg00000037897 | mettl1-203 | 12 | 57768638 | 57769655 | - | mRNA | protein_coding |
| 41946 | enst00000548504 | sg00000037897 | mettl1-204 | 12 | 57769049 | 57769865 | - | mRNA | protein_coding |
| 43573 | enst00000548256 | sg00000123427 | eef1akmt3-203 | 12 | 57771492 | 57780430 | + | mRNA | protein_coding |
| 44157 | enst00000551117 | sg00000037897 | mettl1-207 | 12 | 57769304 | 57772076 | - | mRNA | nonsense_mediated_decay |
| 44182 | enst00000549773 | sg00000037897 | mettl1-206 | 12 | 57770757 | 57772101 | - | lnc_RNA | retained_intron |
| 44186 | enst00000324871 | sg00000037897 | mettl1-202 | 12 | 57768471 | 57772105 | - | mRNA | protein_coding |
| 44195 | enst00000548681 | sg00000037897 | mettl1-205 | 12 | 57770684 | 57772114 | - | lnc_RNA | processed_transcript |
| 44197 | enst00000553125 | sg00000037897 | mettl1-208 | 12 | 57769580 | 57772116 | - | mRNA | nonsense_mediated_decay |
| 44200 | enst00000257848 | sg00000037897 | mettl1-201 | 12 | 57768582 | 57772119 | - | mRNA | protein_coding |
| 44281 | enst00000551420 | sg00000123427 | eef1akmt3-204 | 12 | 57772200 | 57780780 | + | mRNA | protein_coding |
| 44695 | enst00000300209 | sg00000123427 | eef1akmt3-201 | 12 | 57772614 | 57782541 | + | mRNA | protein_coding |
| 44737 | enst00000552307 | sg00000123427 | eef1akmt3-205 | 12 | 57772656 | 57774767 | + | lnc_RNA | processed_transcript |
| 44741 | enst00000651284 | sg00000257921 | ac025165.3-201 | 12 | 57772660 | 57797554 | + | mRNA | nonsense_mediated_decay |
| 44759 | enst00000333012 | sg00000123427 | eef1akmt3-202 | 12 | 57772678 | 57782541 | + | mRNA | protein_coding |
| 45109 | enst00000471530 | sg00000257921 | ac025165.3-202 | 12 | 57773028 | 57787046 | + | mRNA | nonsense_mediated_decay |
| 45133 | enst00000553083 | sg00000257921 | ac025165.3-203 | 12 | 57773052 | 57786243 | + | lnc_RNA | processed_transcript |
| 45134 | enst00000546504 | sg00000257921 | ac025165.3-204 | 12 | 57773053 | 57786247 | + | mRNA | protein_coding |
| -51416 | enst00000480739 | sg00000242990 | rpl13ap23-201 | 12 | 57674665 | 57675250 | + | pseudogenic_transcript | processed_pseudogene |
| 54842 | enst00000540550 | sg00000123297 | tsfm-206 | 12 | 57782761 | 57797587 | + | mRNA | protein_coding |
| 54857 | enst00000651899 | sg00000123297 | tsfm-211 | 12 | 57782776 | 57796733 | + | mRNA | nonsense_mediated_decay |
| 54857 | enst00000323833 | sg00000123297 | tsfm-201 | 12 | 57782776 | 57796734 | + | mRNA | protein_coding |
| 54862 | enst00000417094 | sg00000123297 | tsfm-202 | 12 | 57782781 | 57786200 | + | mRNA | nonsense_mediated_decay |
| 54868 | enst00000548851 | sg00000123297 | tsfm-208 | 12 | 57782787 | 57808071 | + | mRNA | protein_coding |
| 54868 | enst00000550559 | sg00000123297 | tsfm-209 | 12 | 57782787 | 57802774 | + | mRNA | protein_coding |
| 54868 | enst00000652027 | sg00000123297 | tsfm-212 | 12 | 57782787 | 57797587 | + | mRNA | protein_coding |
| 54871 | enst00000651066 | sg00000123297 | tsfm-210 | 12 | 57782790 | 57797571 | + | mRNA | nonsense_mediated_decay |
| 54880 | enst00000543727 | sg00000123297 | tsfm-207 | 12 | 57782799 | 57802631 | + | mRNA | protein_coding |
| 54884 | enst00000434359 | sg00000123297 | tsfm-203 | 12 | 57782803 | 57793073 | + | mRNA | protein_coding |
| 54899 | enst00000457189 | sg00000123297 | tsfm-204 | 12 | 57782818 | 57796261 | + | mRNA | protein_coding |
| 54962 | enst00000497617 | sg00000123297 | tsfm-205 | 12 | 57782881 | 57796367 | + | lnc_RNA | processed_transcript |
| 72734 | enst00000546952 | sg00000135407 | avil-202 | 12 | 57797376 | 57800653 | - | lnc_RNA | retained_intron |
| 73498 | enst00000551248 | sg00000135407 | avil-210 | 12 | 57797778 | 57801417 | - | lnc_RNA | retained_intron |
| 75919 | enst00000602802 | sg00000270039 | ac025165.5-201 | 12 | 57803838 | 57804415 | + | lnc_RNA | lncrna |
| 78341 | enst00000384022 | sg00000206749 | rnu6-1083p-201 | 12 | 57806154 | 57806260 | - | snRNA | snrna |
| 78570 | enst00000550083 | sg00000135407 | avil-208 | 12 | 57803296 | 57806489 | - | lnc_RNA | processed_transcript |
| 79722 | enst00000549753 | sg00000135407 | avil-205 | 12 | 57806132 | 57807641 | - | lnc_RNA | retained_intron |
| 80773 | enst00000550537 | sg00000135407 | avil-209 | 12 | 57802183 | 57808692 | - | lnc_RNA | retained_intron |
| 81260 | enst00000549548 | sg00000135407 | avil-204 | 12 | 57805856 | 57809179 | - | lnc_RNA | retained_intron |
| 86307 | enst00000548843 | sg00000135407 | avil-203 | 12 | 57806138 | 57814226 | - | lnc_RNA | retained_intron |
| 86575 | enst00000602327 | sg00000269903 | ac025165.4-201 | 12 | 57814494 | 57814926 | + | lnc_RNA | lncrna |
| 88139 | enst00000549851 | sg00000135407 | avil-206 | 12 | 57797740 | 57816058 | - | mRNA | nonsense_mediated_decay |
| 88552 | enst00000257861 | sg00000135407 | avil-201 | 12 | 57797882 | 57816471 | - | mRNA | protein_coding |
| 90785 | enst00000549994 | sg00000135407 | avil-207 | 12 | 57810901 | 57818704 | - | mRNA | protein_coding |
| -92842 | enst00000449184 | sg00000135454 | b4galnt1-203 | 12 | 57628452 | 57633239 | - | mRNA | protein_coding |
| -92876 | enst00000551220 | sg00000135454 | b4galnt1-210 | 12 | 57631222 | 57633205 | - | mRNA | protein_coding |
| -92879 | enst00000550764 | sg00000135454 | b4galnt1-208 | 12 | 57629329 | 57633202 | - | mRNA | protein_coding |
| -92880 | enst00000341156 | sg00000135454 | b4galnt1-201 | 12 | 57623409 | 57633201 | - | mRNA | protein_coding |
| -92930 | enst00000553142 | sg00000135454 | b4galnt1-216 | 12 | 57623410 | 57633151 | - | lnc_RNA | retained_intron |
| -93138 | enst00000548487 | sg00000135454 | b4galnt1-205 | 12 | 57630997 | 57632943 | - | mRNA | nonsense_mediated_decay |
| -93401 | enst00000551925 | sg00000135454 | b4galnt1-211 | 12 | 57631128 | 57632680 | - | lnc_RNA | retained_intron |
| -93402 | enst00000550943 | sg00000135454 | b4galnt1-209 | 12 | 57631157 | 57632679 | - | lnc_RNA | processed_transcript |
| -93413 | enst00000548888 | sg00000135454 | b4galnt1-206 | 12 | 57630152 | 57632668 | - | mRNA | protein_coding |
| -93413 | enst00000552350 | sg00000135454 | b4galnt1-213 | 12 | 57629344 | 57632668 | - | mRNA | protein_coding |
| -93426 | enst00000552798 | sg00000135454 | b4galnt1-215 | 12 | 57626476 | 57632655 | - | mRNA | nonsense_mediated_decay |
| -93432 | enst00000552219 | sg00000135454 | b4galnt1-212 | 12 | 57630507 | 57632649 | - | mRNA | nonsense_mediated_decay |
| -93434 | enst00000418555 | sg00000135454 | b4galnt1-202 | 12 | 57626428 | 57632647 | - | mRNA | protein_coding |
| -94994 | enst00000549391 | sg00000135454 | b4galnt1-207 | 12 | 57628167 | 57631087 | - | mRNA | nonsense_mediated_decay |
| 96624 | enst00000547169 | sg00000175215 | ctdsp2-202 | 12 | 57822891 | 57824543 | - | lnc_RNA | retained_intron |
| -96716 | enst00000552468 | sg00000135454 | b4galnt1-214 | 12 | 57626172 | 57629365 | - | lnc_RNA | retained_intron |
| 96773 | enst00000385054 | sg00000207789 | mir26a2-201 | 12 | 57824609 | 57824692 | - | miRNA | mirna |
| -97352 | enst00000547741 | sg00000135454 | b4galnt1-204 | 12 | 57626941 | 57628729 | - | mRNA | protein_coding |
| 98483 | enst00000549039 | sg00000175215 | ctdsp2-205 | 12 | 57823183 | 57826402 | - | mRNA | protein_coding |
| 99488 | enst00000552294 | sg00000175215 | ctdsp2-208 | 12 | 57826379 | 57827407 | - | lnc_RNA | retained_intron |
| -101185 | enst00000483647 | sg00000135502 | slc26a10-205 | 12 | 57624896 | 57626151 | + | lnc_RNA | processed_transcript |
| -101567 | enst00000490243 | sg00000135502 | slc26a10-207 | 12 | 57624514 | 57626150 | + | lnc_RNA | processed_transcript |
| 101631 | enst00000550144 | sg00000175215 | ctdsp2-206 | 12 | 57823958 | 57829550 | - | mRNA | protein_coding |
| -101815 | enst00000474791 | sg00000135502 | slc26a10-204 | 12 | 57624266 | 57625549 | + | lnc_RNA | retained_intron |
| -102395 | enst00000487816 | sg00000135502 | slc26a10-206 | 12 | 57623686 | 57626151 | + | lnc_RNA | retained_intron |
| -105034 | enst00000463802 | sg00000135502 | slc26a10-203 | 12 | 57621047 | 57622771 | + | lnc_RNA | retained_intron |
| -105178 | enst00000497297 | sg00000135502 | slc26a10-208 | 12 | 57620903 | 57621697 | + | lnc_RNA | retained_intron |
| -105732 | enst00000440686 | sg00000135502 | slc26a10-202 | 12 | 57620349 | 57626150 | + | lnc_RNA | processed_transcript |
| -106171 | enst00000320442 | sg00000135502 | slc26a10-201 | 12 | 57619910 | 57626150 | + | mRNA | protein_coding |
| -106171 | enst00000661867 | sg00000135502 | slc26a10-210 | 12 | 57619910 | 57626131 | + | lnc_RNA | retained_intron |
| -106443 | enst00000593846 | sg00000224713 | ac025165.1-203 | 12 | 57615228 | 57619638 | - | lnc_RNA | lncrna |
| -106545 | enst00000637859 | sg00000135502 | slc26a10-209 | 12 | 57619536 | 57620418 | + | lnc_RNA | processed_transcript |
| -106554 | enst00000665594 | sg00000135502 | slc26a10-211 | 12 | 57619527 | 57626036 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -107910 | enst00000444467 | sg00000224713 | ac025165.1-202 | 12 | 57612339 | 57618171 | - | lnc_RNA | lncrna |
| -108016 | enst00000356672 | sg00000224713 | ac025165.1-201 | 12 | 57612118 | 57618065 | - | lnc_RNA | lncrna |
| 109173 | enst00000549683 | sg00000257953 | ac083805.2-201 | 12 | 57837092 | 57842745 | + | lnc_RNA | lncrna |
| -109698 | enst00000477314 | sg00000287908 | ac025165.6-202 | 12 | 57616383 | 57619379 | + | lnc_RNA | processed_transcript |
| -109776 | enst00000610219 | sg00000224713 | ac025165.1-204 | 12 | 57615492 | 57616305 | - | lnc_RNA | lncrna |
| -110801 | enst00000474359 | sg00000287908 | ac025165.6-201 | 12 | 57615280 | 57626125 | + | mRNA | nonsense_mediated_decay |
| -111508 | enst00000484357 | sg00000240771 | arhgef25-206 | 12 | 57614573 | 57615031 | + | lnc_RNA | retained_intron |
| -111588 | enst00000466399 | sg00000240771 | arhgef25-203 | 12 | 57614493 | 57615893 | + | lnc_RNA | retained_intron |
| -111644 | enst00000469072 | sg00000240771 | arhgef25-204 | 12 | 57614437 | 57616014 | + | lnc_RNA | retained_intron |
| -112087 | enst00000471370 | sg00000240771 | arhgef25-205 | 12 | 57613994 | 57617217 | + | lnc_RNA | retained_intron |
| -114168 | enst00000616622 | sg00000240771 | arhgef25-207 | 12 | 57611913 | 57617242 | + | mRNA | protein_coding |
| -114646 | enst00000286494 | sg00000240771 | arhgef25-201 | 12 | 57611435 | 57617245 | + | mRNA | protein_coding |
| -115901 | enst00000333972 | sg00000240771 | arhgef25-202 | 12 | 57610180 | 57617243 | + | mRNA | protein_coding |
| 117615 | enst00000547701 | sg00000175215 | ctdsp2-203 | 12 | 57823461 | 57845534 | - | mRNA | protein_coding |
| -118581 | enst00000550300 | sg00000178498 | dtx3-206 | 12 | 57607500 | 57609196 | + | mRNA | protein_coding |
| 118625 | enst00000551594 | sg00000175215 | ctdsp2-207 | 12 | 57823653 | 57846544 | - | mRNA | nonsense_mediated_decay |
| 118785 | enst00000548823 | sg00000175215 | ctdsp2-204 | 12 | 57822800 | 57846704 | - | mRNA | protein_coding |
| 118810 | enst00000398073 | sg00000175215 | ctdsp2-201 | 12 | 57819927 | 57846729 | - | mRNA | protein_coding |
| -121074 | enst00000548478 | sg00000178498 | dtx3-203 | 12 | 57605007 | 57607466 | + | mRNA | protein_coding |
| -121247 | enst00000551632 | sg00000178498 | dtx3-208 | 12 | 57604834 | 57609804 | + | mRNA | protein_coding |
| -121257 | enst00000548198 | sg00000178498 | dtx3-202 | 12 | 57604824 | 57609803 | + | mRNA | protein_coding |
| -121257 | enst00000337737 | sg00000178498 | dtx3-201 | 12 | 57604824 | 57609802 | + | mRNA | protein_coding |
| -121442 | enst00000549583 | sg00000178498 | dtx3-205 | 12 | 57604639 | 57607467 | + | mRNA | protein_coding |
| -121458 | enst00000551835 | sg00000178498 | dtx3-209 | 12 | 57604623 | 57607009 | + | mRNA | protein_coding |
| -121458 | enst00000550596 | sg00000178498 | dtx3-207 | 12 | 57604623 | 57606511 | + | mRNA | protein_coding |
| -121459 | enst00000548804 | sg00000178498 | dtx3-204 | 12 | 57604622 | 57609800 | + | mRNA | protein_coding |
| -126991 | enst00000548264 | sg00000166908 | pip4k2c-204 | 12 | 57599090 | 57600977 | + | mRNA | protein_coding |
| -134815 | enst00000550095 | sg00000166908 | pip4k2c-205 | 12 | 57591266 | 57600436 | + | mRNA | nonsense_mediated_decay |
| -134835 | enst00000550360 | sg00000166908 | pip4k2c-206 | 12 | 57591246 | 57599144 | + | mRNA | nonsense_mediated_decay |
| -134838 | enst00000550465 | sg00000166908 | pip4k2c-207 | 12 | 57591243 | 57601879 | + | mRNA | protein_coding |
| -134859 | enst00000551772 | sg00000166908 | pip4k2c-208 | 12 | 57591222 | 57599094 | + | mRNA | protein_coding |
| -134878 | enst00000540759 | sg00000166908 | pip4k2c-203 | 12 | 57591203 | 57603418 | + | mRNA | protein_coding |
| -134889 | enst00000354947 | sg00000166908 | pip4k2c-201 | 12 | 57591192 | 57603418 | + | mRNA | protein_coding |
| -134907 | enst00000422156 | sg00000166908 | pip4k2c-202 | 12 | 57591174 | 57601926 | + | mRNA | protein_coding |
| -144403 | enst00000552227 | sg00000155980 | kif5a-203 | 12 | 57581678 | 57582874 | + | lnc_RNA | retained_intron |
| 144951 | enst00000664759 | sg00000245651 | ac083805.1-207 | 12 | 57869839 | 57872870 | - | lnc_RNA | lncrna |
| 144951 | enst00000661247 | sg00000245651 | ac083805.1-201 | 12 | 57869834 | 57872870 | - | lnc_RNA | lncrna |
| 158764 | enst00000656548 | sg00000245651 | ac083805.1-210 | 12 | 57875950 | 57886683 | - | lnc_RNA | lncrna |
| 165928 | enst00000661434 | sg00000245651 | ac083805.1-204 | 12 | 57892989 | 57893847 | - | lnc_RNA | lncrna |
| 165961 | enst00000659761 | sg00000245651 | ac083805.1-205 | 12 | 57886223 | 57893880 | - | lnc_RNA | lncrna |
| 166033 | enst00000548955 | sg00000245651 | ac083805.1-203 | 12 | 57886361 | 57893952 | - | lnc_RNA | lncrna |
| 166095 | enst00000661970 | sg00000245651 | ac083805.1-208 | 12 | 57869835 | 57894014 | - | lnc_RNA | lncrna |
| 166248 | enst00000667373 | sg00000245651 | ac083805.1-209 | 12 | 57886219 | 57894167 | - | lnc_RNA | lncrna |
| 166313 | enst00000619560 | sg00000273805 | ac083805.3-201 | 12 | 57894232 | 57896846 | + | lnc_RNA | lncrna |
| 166995 | enst00000664926 | sg00000245651 | ac083805.1-211 | 12 | 57869838 | 57894914 | - | lnc_RNA | lncrna |
| 167000 | enst00000667552 | sg00000245651 | ac083805.1-206 | 12 | 57892989 | 57894919 | - | lnc_RNA | lncrna |
| 168563 | enst00000499481 | sg00000245651 | ac083805.1-202 | 12 | 57869835 | 57896482 | - | lnc_RNA | lncrna |
| -176037 | enst00000455537 | sg00000155980 | kif5a-202 | 12 | 57550044 | 57586633 | + | mRNA | protein_coding |
| -176037 | enst00000286452 | sg00000155980 | kif5a-201 | 12 | 57550044 | 57584648 | + | mRNA | protein_coding |
| 178120 | enst00000647763 | sg00000166896 | atp23-205 | 12 | 57906039 | 57959148 | + | lnc_RNA | processed_transcript |
| -178750 | enst00000548249 | sg00000175203 | dctn2-209 | 12 | 57530102 | 57547331 | - | mRNA | protein_coding |
| -178857 | enst00000550750 | sg00000175203 | dctn2-217 | 12 | 57534341 | 57547224 | - | mRNA | protein_coding |
| -178875 | enst00000547480 | sg00000175203 | dctn2-208 | 12 | 57535495 | 57547206 | - | lnc_RNA | retained_intron |
| -178888 | enst00000546559 | sg00000175203 | dctn2-203 | 12 | 57542947 | 57547193 | - | lnc_RNA | processed_transcript |
| -178893 | enst00000547345 | sg00000175203 | dctn2-207 | 12 | 57534978 | 57547188 | - | lnc_RNA | retained_intron |
| -178896 | enst00000546670 | sg00000175203 | dctn2-204 | 12 | 57532994 | 57547185 | - | mRNA | protein_coding |
| -178907 | enst00000549712 | sg00000175203 | dctn2-213 | 12 | 57546028 | 57547174 | - | lnc_RNA | processed_transcript |
| -178909 | enst00000543672 | sg00000175203 | dctn2-202 | 12 | 57530689 | 57547172 | - | mRNA | protein_coding |
| -178929 | enst00000550201 | sg00000175203 | dctn2-215 | 12 | 57530354 | 57547152 | - | mRNA | nonsense_mediated_decay |
| -178940 | enst00000434715 | sg00000175203 | dctn2-201 | 12 | 57530311 | 57547141 | - | mRNA | protein_coding |
| -178960 | enst00000550954 | sg00000175203 | dctn2-218 | 12 | 57532793 | 57547121 | - | mRNA | protein_coding |
| -178961 | enst00000549394 | sg00000175203 | dctn2-212 | 12 | 57530617 | 57547120 | - | mRNA | nonsense_mediated_decay |
| -187515 | enst00000551400 | sg00000175203 | dctn2-221 | 12 | 57535060 | 57538566 | - | lnc_RNA | processed_transcript |
| -187529 | enst00000546965 | sg00000175203 | dctn2-206 | 12 | 57534009 | 57538552 | - | lnc_RNA | processed_transcript |
| -189998 | enst00000550576 | sg00000175203 | dctn2-216 | 12 | 57535484 | 57536083 | - | lnc_RNA | retained_intron |
| -190236 | enst00000548949 | sg00000175203 | dctn2-211 | 12 | 57534346 | 57535845 | - | lnc_RNA | processed_transcript |
| -190236 | enst00000551611 | sg00000175203 | dctn2-222 | 12 | 57533953 | 57535845 | - | lnc_RNA | processed_transcript |
| -190236 | enst00000550086 | sg00000175203 | dctn2-214 | 12 | 57532635 | 57535845 | - | mRNA | protein_coding |
| -190535 | enst00000551142 | sg00000175203 | dctn2-220 | 12 | 57534382 | 57535546 | - | lnc_RNA | retained_intron |
| -190942 | enst00000552390 | sg00000175203 | dctn2-224 | 12 | 57532590 | 57535139 | - | lnc_RNA | retained_intron |
| -191011 | enst00000546758 | sg00000175203 | dctn2-205 | 12 | 57530679 | 57535070 | - | mRNA | protein_coding |
| -191551 | enst00000548736 | sg00000175203 | dctn2-210 | 12 | 57532978 | 57534530 | - | lnc_RNA | retained_intron |
| -191679 | enst00000551872 | sg00000175203 | dctn2-223 | 12 | 57532795 | 57534402 | - | lnc_RNA | retained_intron |
| -192109 | enst00000550988 | sg00000175203 | dctn2-219 | 12 | 57532267 | 57533972 | - | lnc_RNA | retained_intron |
| -197079 | enst00000547844 | sg00000166987 | mbd6-205 | 12 | 57529002 | 57530146 | + | mRNA | nonsense_mediated_decay |
| -198169 | enst00000552163 | sg00000166987 | mbd6-212 | 12 | 57527912 | 57528712 | + | mRNA | protein_coding |
| -198579 | enst00000548550 | sg00000166987 | mbd6-206 | 12 | 57527502 | 57528190 | + | lnc_RNA | retained_intron |
| -199438 | enst00000547545 | sg00000166987 | mbd6-204 | 12 | 57526643 | 57530143 | + | mRNA | nonsense_mediated_decay |
| -201762 | enst00000552659 | sg00000166987 | mbd6-214 | 12 | 57524319 | 57526653 | + | mRNA | protein_coding |
| -202052 | enst00000549042 | sg00000166987 | mbd6-208 | 12 | 57524029 | 57525091 | + | mRNA | nonsense_mediated_decay |
| -203018 | enst00000552255 | sg00000166987 | mbd6-213 | 12 | 57523063 | 57524742 | + | mRNA | protein_coding |
| -203239 | enst00000549623 | sg00000166987 | mbd6-210 | 12 | 57522842 | 57525455 | + | mRNA | protein_coding |
| -203241 | enst00000546632 | sg00000166987 | mbd6-202 | 12 | 57522840 | 57524766 | + | mRNA | protein_coding |
| -203257 | enst00000355673 | sg00000166987 | mbd6-201 | 12 | 57522824 | 57530148 | + | mRNA | protein_coding |
| -204344 | enst00000623876 | sg00000175197 | ddit3-206 | 12 | 57516588 | 57521737 | - | mRNA | protein_coding |
| -204401 | enst00000546805 | sg00000166987 | mbd6-203 | 12 | 57521680 | 57524956 | + | mRNA | protein_coding |
| -205033 | enst00000549231 | sg00000166987 | mbd6-209 | 12 | 57521048 | 57524764 | + | lnc_RNA | processed_transcript |
| -205116 | enst00000551351 | sg00000166987 | mbd6-211 | 12 | 57520965 | 57524765 | + | mRNA | protein_coding |
| -205371 | enst00000548887 | sg00000166987 | mbd6-207 | 12 | 57520710 | 57525414 | + | mRNA | protein_coding |
| -205564 | enst00000551116 | sg00000175197 | ddit3-204 | 12 | 57516589 | 57520517 | - | mRNA | protein_coding |
| -205564 | enst00000346473 | sg00000175197 | ddit3-201 | 12 | 57516593 | 57520517 | - | mRNA | protein_coding |
| -205570 | enst00000552740 | sg00000175197 | ddit3-205 | 12 | 57516809 | 57520511 | - | mRNA | protein_coding |
| -205570 | enst00000547526 | sg00000175197 | ddit3-203 | 12 | 57516953 | 57520511 | - | mRNA | protein_coding |
| -205589 | enst00000547303 | sg00000175197 | ddit3-202 | 12 | 57516588 | 57520492 | - | mRNA | protein_coding |
| -205601 | enst00000642841 | sg00000285133 | ac022506.1-201 | 12 | 57517712 | 57520480 | - | mRNA | protein_coding |
| -206822 | enst00000385293 | sg00000208028 | mir616-201 | 12 | 57519163 | 57519259 | - | miRNA | mirna |
| 208140 | enst00000547492 | sg00000257698 | gihcg-202 | 12 | 57931569 | 57936059 | - | lnc_RNA | retained_intron |
| 208144 | enst00000553102 | sg00000257698 | gihcg-204 | 12 | 57935074 | 57936063 | - | lnc_RNA | retained_intron |
| 208160 | enst00000551421 | sg00000257698 | gihcg-203 | 12 | 57931528 | 57936079 | - | lnc_RNA | lncrna |
| 208200 | enst00000660297 | sg00000257698 | gihcg-210 | 12 | 57935238 | 57936119 | - | lnc_RNA | lncrna |
| 208203 | enst00000664635 | sg00000257698 | gihcg-211 | 12 | 57931453 | 57936122 | - | lnc_RNA | lncrna |
| 208222 | enst00000655210 | sg00000257698 | gihcg-206 | 12 | 57933911 | 57936141 | - | lnc_RNA | lncrna |
| 208236 | enst00000653595 | sg00000257698 | gihcg-205 | 12 | 57931228 | 57936155 | - | lnc_RNA | lncrna |
| 208247 | enst00000668073 | sg00000257698 | gihcg-213 | 12 | 57931295 | 57936166 | - | lnc_RNA | lncrna |
| 208256 | enst00000667438 | sg00000257698 | gihcg-212 | 12 | 57931528 | 57936175 | - | lnc_RNA | lncrna |
| 208256 | enst00000546580 | sg00000257698 | gihcg-201 | 12 | 57931528 | 57936175 | - | lnc_RNA | lncrna |
| 208261 | enst00000655884 | sg00000257698 | gihcg-207 | 12 | 57931165 | 57936180 | - | lnc_RNA | lncrna |
| 208283 | enst00000656617 | sg00000257698 | gihcg-208 | 12 | 57930272 | 57936202 | - | lnc_RNA | lncrna |
| 208426 | enst00000659090 | sg00000257698 | gihcg-209 | 12 | 57930115 | 57936345 | - | lnc_RNA | lncrna |
| -210898 | enst00000551172 | sg00000166986 | mars1-222 | 12 | 57515183 | 57516647 | + | mRNA | nonsense_mediated_decay |
| -210900 | enst00000552499 | sg00000166986 | mars1-229 | 12 | 57515181 | 57516648 | + | mRNA | nonsense_mediated_decay |
| -210931 | enst00000547665 | sg00000166986 | mars1-209 | 12 | 57515150 | 57516655 | + | mRNA | protein_coding |
| -211259 | enst00000551805 | sg00000166986 | mars1-224 | 12 | 57514822 | 57515493 | + | lnc_RNA | retained_intron |
| -213151 | enst00000552914 | sg00000166986 | mars1-230 | 12 | 57512930 | 57516655 | + | mRNA | protein_coding |
| -213393 | enst00000620653 | sg00000284152 | mir6758-201 | 12 | 57512688 | 57512750 | + | miRNA | mirna |
| -213590 | enst00000548202 | sg00000166986 | mars1-211 | 12 | 57512491 | 57515234 | + | lnc_RNA | retained_intron |
| 213622 | enst00000551997 | sg00000166896 | atp23-204 | 12 | 57941541 | 57951884 | + | lnc_RNA | processed_transcript |
| 213648 | enst00000300145 | sg00000166896 | atp23-201 | 12 | 57941567 | 57959148 | + | mRNA | protein_coding |
| 213877 | enst00000549257 | sg00000166896 | atp23-203 | 12 | 57941796 | 57956890 | + | mRNA | nonsense_mediated_decay |
| -214284 | enst00000549048 | sg00000166986 | mars1-216 | 12 | 57511797 | 57514842 | + | lnc_RNA | retained_intron |
| -214312 | enst00000548630 | sg00000166986 | mars1-212 | 12 | 57511769 | 57512464 | + | lnc_RNA | retained_intron |
| -214495 | enst00000546971 | sg00000166986 | mars1-206 | 12 | 57511586 | 57512964 | + | lnc_RNA | retained_intron |
| 221822 | enst00000546709 | sg00000166896 | atp23-202 | 12 | 57949741 | 57956940 | + | lnc_RNA | processed_transcript |
| -222095 | enst00000549603 | sg00000166986 | mars1-219 | 12 | 57503986 | 57511785 | + | lnc_RNA | retained_intron |
| -225723 | enst00000548944 | sg00000166986 | mars1-215 | 12 | 57500358 | 57516655 | + | mRNA | protein_coding |
| -225967 | enst00000549827 | sg00000166986 | mars1-220 | 12 | 57500114 | 57504280 | + | lnc_RNA | retained_intron |
| -236551 | enst00000552371 | sg00000166986 | mars1-228 | 12 | 57489530 | 57500430 | + | mRNA | protein_coding |
| -237267 | enst00000393797 | sg00000123329 | arhgap9-202 | 12 | 57472264 | 57488814 | - | mRNA | protein_coding |
| -237355 | enst00000550288 | sg00000123329 | arhgap9-213 | 12 | 57472266 | 57488726 | - | mRNA | protein_coding |
| -237395 | enst00000553123 | sg00000166986 | mars1-231 | 12 | 57488686 | 57490216 | + | lnc_RNA | retained_intron |
| -237460 | enst00000670128 | sg00000123329 | arhgap9-225 | 12 | 57472517 | 57488621 | - | mRNA | protein_coding |
| -237869 | enst00000548146 | sg00000166986 | mars1-210 | 12 | 57488212 | 57489283 | + | lnc_RNA | processed_transcript |
| -237990 | enst00000630571 | sg00000166986 | mars1-234 | 12 | 57488091 | 57489911 | + | mRNA | protein_coding |
| -237990 | enst00000630803 | sg00000166986 | mars1-235 | 12 | 57488091 | 57490351 | + | mRNA | protein_coding |
| -237996 | enst00000552007 | sg00000166986 | mars1-227 | 12 | 57488085 | 57490358 | + | mRNA | nonsense_mediated_decay |
| -237996 | enst00000551892 | sg00000166986 | mars1-226 | 12 | 57488085 | 57500423 | + | mRNA | nonsense_mediated_decay |
| -238013 | enst00000548714 | sg00000166986 | mars1-214 | 12 | 57488068 | 57489610 | + | lnc_RNA | retained_intron |
| -238013 | enst00000262027 | sg00000166986 | mars1-201 | 12 | 57488068 | 57516652 | + | mRNA | protein_coding |
| -238013 | enst00000628866 | sg00000166986 | mars1-233 | 12 | 57488068 | 57516649 | + | mRNA | protein_coding |
| -238013 | enst00000447721 | sg00000166986 | mars1-202 | 12 | 57488068 | 57512154 | + | lnc_RNA | processed_transcript |
| -238013 | enst00000549074 | sg00000166986 | mars1-217 | 12 | 57488068 | 57498185 | + | mRNA | nonsense_mediated_decay |
| -238013 | enst00000551431 | sg00000166986 | mars1-223 | 12 | 57488068 | 57490621 | + | mRNA | nonsense_mediated_decay |
| -238013 | enst00000547501 | sg00000166986 | mars1-208 | 12 | 57488068 | 57490234 | + | mRNA | nonsense_mediated_decay |
| -238013 | enst00000553162 | sg00000166986 | mars1-232 | 12 | 57488068 | 57490033 | + | lnc_RNA | retained_intron |
| -238013 | enst00000551842 | sg00000166986 | mars1-225 | 12 | 57488068 | 57489783 | + | lnc_RNA | retained_intron |
| -238013 | enst00000547062 | sg00000166986 | mars1-207 | 12 | 57488068 | 57489457 | + | lnc_RNA | retained_intron |
| -238015 | enst00000545888 | sg00000166986 | mars1-204 | 12 | 57488066 | 57516655 | + | mRNA | nonsense_mediated_decay |
| -238019 | enst00000546481 | sg00000166986 | mars1-205 | 12 | 57488062 | 57489519 | + | lnc_RNA | retained_intron |
| -238025 | enst00000550449 | sg00000166986 | mars1-221 | 12 | 57488056 | 57490342 | + | lnc_RNA | retained_intron |
| -238057 | enst00000548674 | sg00000166986 | mars1-213 | 12 | 57488024 | 57498241 | + | lnc_RNA | processed_transcript |
| -238787 | enst00000537638 | sg00000166986 | mars1-203 | 12 | 57487294 | 57517569 | + | mRNA | nonsense_mediated_decay |
| 239139 | enst00000550830 | sg00000257159 | ac084033.1-201 | 12 | 57967058 | 57968399 | + | pseudogenic_transcript | processed_pseudogene |
| -246215 | enst00000552249 | sg00000123329 | arhgap9-221 | 12 | 57477543 | 57479866 | - | mRNA | protein_coding |
| -246215 | enst00000393791 | sg00000123329 | arhgap9-201 | 12 | 57472269 | 57479866 | - | mRNA | protein_coding |
| -246235 | enst00000552420 | sg00000123329 | arhgap9-222 | 12 | 57476730 | 57479846 | - | lnc_RNA | retained_intron |
| -246449 | enst00000424809 | sg00000123329 | arhgap9-203 | 12 | 57472264 | 57479632 | - | mRNA | protein_coding |
| -247471 | enst00000552066 | sg00000123329 | arhgap9-220 | 12 | 57476888 | 57478610 | - | mRNA | protein_coding |
| -247744 | enst00000548148 | sg00000123329 | arhgap9-210 | 12 | 57476078 | 57478337 | - | lnc_RNA | retained_intron |
| -247883 | enst00000430041 | sg00000123329 | arhgap9-204 | 12 | 57472270 | 57478198 | - | mRNA | protein_coding |
| -247931 | enst00000549602 | sg00000123329 | arhgap9-211 | 12 | 57477480 | 57478150 | - | mRNA | protein_coding |
| -248022 | enst00000548139 | sg00000123329 | arhgap9-209 | 12 | 57475485 | 57478059 | - | mRNA | protein_coding |
| -248045 | enst00000551574 | sg00000123329 | arhgap9-219 | 12 | 57476831 | 57478036 | - | lnc_RNA | retained_intron |
| -248208 | enst00000552604 | sg00000123329 | arhgap9-223 | 12 | 57476377 | 57477873 | - | mRNA | protein_coding |
| -248214 | enst00000551000 | sg00000123329 | arhgap9-217 | 12 | 57477214 | 57477867 | - | lnc_RNA | retained_intron |
| -248225 | enst00000550454 | sg00000123329 | arhgap9-216 | 12 | 57476136 | 57477856 | - | lnc_RNA | processed_transcript |
| -248230 | enst00000546200 | sg00000123329 | arhgap9-205 | 12 | 57472266 | 57477851 | - | lnc_RNA | retained_intron |
| -248265 | enst00000547216 | sg00000123329 | arhgap9-208 | 12 | 57476934 | 57477816 | - | lnc_RNA | retained_intron |
| -248297 | enst00000551452 | sg00000123329 | arhgap9-218 | 12 | 57476871 | 57477784 | - | mRNA | protein_coding |
| -249440 | enst00000552953 | sg00000123329 | arhgap9-224 | 12 | 57472264 | 57476641 | - | lnc_RNA | retained_intron |
| -249744 | enst00000547200 | sg00000123329 | arhgap9-207 | 12 | 57476158 | 57476337 | - | lnc_RNA | processed_transcript |
| 250358 | enst00000410278 | sg00000222210 | rn7skp65-201 | 12 | 57977965 | 57978277 | - | ncRNA | misc_rna |
| -250636 | enst00000549133 | sg00000166986 | mars1-218 | 12 | 57475445 | 57487473 | + | lnc_RNA | processed_transcript |
| -250670 | enst00000550440 | sg00000123329 | arhgap9-215 | 12 | 57472477 | 57475411 | - | lnc_RNA | retained_intron |
| -250718 | enst00000550130 | sg00000123329 | arhgap9-212 | 12 | 57472676 | 57475363 | - | mRNA | protein_coding |
| -250941 | enst00000546704 | sg00000123329 | arhgap9-206 | 12 | 57474269 | 57475140 | - | lnc_RNA | retained_intron |
| -251147 | enst00000550399 | sg00000123329 | arhgap9-214 | 12 | 57472265 | 57474934 | - | mRNA | protein_coding |
| 256842 | enst00000551532 | sg00000257668 | ac084033.2-201 | 12 | 57983795 | 57984761 | - | pseudogenic_transcript | processed_pseudogene |
| -260706 | enst00000527742 | sg00000111087 | gli1-202 | 12 | 57465375 | 57466141 | + | lnc_RNA | retained_intron |
| -262389 | enst00000528467 | sg00000111087 | gli1-204 | 12 | 57463692 | 57472059 | + | mRNA | protein_coding |
| -263263 | enst00000656936 | sg00000287200 | ac022506.2-201 | 12 | 57457596 | 57462818 | - | lnc_RNA | lncrna |
| -265568 | enst00000530789 | sg00000111087 | gli1-205 | 12 | 57460513 | 57464943 | + | lnc_RNA | retained_intron |
| -265590 | enst00000528432 | sg00000111087 | gli1-203 | 12 | 57460491 | 57464867 | + | mRNA | protein_coding |
| -265930 | enst00000546141 | sg00000111087 | gli1-208 | 12 | 57460151 | 57472260 | + | mRNA | protein_coding |
| -265946 | enst00000532291 | sg00000111087 | gli1-206 | 12 | 57460135 | 57466387 | + | mRNA | protein_coding |
| -265946 | enst00000543426 | sg00000111087 | gli1-207 | 12 | 57460135 | 57472260 | + | mRNA | protein_coding |
| -266296 | enst00000228682 | sg00000111087 | gli1-201 | 12 | 57459785 | 57472268 | + | mRNA | protein_coding |
| -270109 | enst00000553033 | sg00000139269 | inhbe-204 | 12 | 57455972 | 57456638 | + | lnc_RNA | processed_transcript |
| -270774 | enst00000266646 | sg00000139269 | inhbe-201 | 12 | 57455307 | 57458025 | + | mRNA | protein_coding |
| -271378 | enst00000547970 | sg00000139269 | inhbe-202 | 12 | 57454703 | 57456782 | + | mRNA | protein_coding |
| -273758 | enst00000551553 | sg00000139269 | inhbe-203 | 12 | 57452323 | 57459280 | + | lnc_RNA | processed_transcript |
| -291297 | enst00000309668 | sg00000175189 | inhbc-201 | 12 | 57434784 | 57452062 | + | mRNA | protein_coding |
| -294965 | enst00000547552 | sg00000258001 | ac126614.1-201 | 12 | 57431116 | 57433935 | + | lnc_RNA | lncrna |
| -295076 | enst00000402412 | sg00000179912 | r3hdm2-204 | 12 | 57253765 | 57431005 | - | mRNA | protein_coding |
| -295076 | enst00000347140 | sg00000179912 | r3hdm2-201 | 12 | 57253764 | 57431005 | - | mRNA | protein_coding |
| -295273 | enst00000634871 | sg00000179912 | r3hdm2-215 | 12 | 57253776 | 57430808 | - | mRNA | protein_coding |
| -295291 | enst00000448732 | sg00000179912 | r3hdm2-208 | 12 | 57310340 | 57430790 | - | mRNA | protein_coding |
| -310785 | enst00000364328 | sg00000201198 | rnu6-879p-201 | 12 | 57415296 | 57415403 | + | snRNA | snrna |
| 359973 | enst00000548215 | sg00000257541 | linc02403-201 | 12 | 58087892 | 58093362 | + | lnc_RNA | lncrna |
| 370094 | enst00000623600 | sg00000279134 | ac090643.1-201 | 12 | 58094914 | 58098013 | - | unconfirmed_transcript | tec |
| 375988 | enst00000623442 | sg00000279411 | ac090643.2-201 | 12 | 58103907 | 58105935 | + | unconfirmed_transcript | tec |
| -384599 | enst00000403821 | sg00000179912 | r3hdm2-205 | 12 | 57254756 | 57341482 | - | mRNA | protein_coding |
| -415618 | enst00000358907 | sg00000179912 | r3hdm2-202 | 12 | 57253765 | 57310463 | - | mRNA | protein_coding |
| -415618 | enst00000441731 | sg00000179912 | r3hdm2-207 | 12 | 57253765 | 57310463 | - | mRNA | protein_coding |
| -415630 | enst00000551465 | sg00000179912 | r3hdm2-213 | 12 | 57298004 | 57310451 | - | lnc_RNA | retained_intron |
| -422901 | enst00000552428 | sg00000179912 | r3hdm2-214 | 12 | 57297763 | 57303180 | - | lnc_RNA | processed_transcript |
| -426645 | enst00000547262 | sg00000179912 | r3hdm2-211 | 12 | 57280430 | 57299436 | - | mRNA | protein_coding |
| -429048 | enst00000393811 | sg00000179912 | r3hdm2-203 | 12 | 57253762 | 57297033 | - | lnc_RNA | retained_intron |
| -429597 | enst00000548184 | sg00000258830 | ac137834.1-201 | 12 | 57249609 | 57296484 | - | mRNA | nonsense_mediated_decay |
| -430487 | enst00000547019 | sg00000179912 | r3hdm2-210 | 12 | 57280461 | 57295594 | - | lnc_RNA | retained_intron |
| -430602 | enst00000429355 | sg00000179912 | r3hdm2-206 | 12 | 57254733 | 57295479 | - | mRNA | protein_coding |
| -457504 | enst00000546843 | sg00000179912 | r3hdm2-209 | 12 | 57256490 | 57268577 | - | lnc_RNA | processed_transcript |
| -457624 | enst00000548161 | sg00000179912 | r3hdm2-212 | 12 | 57256014 | 57268457 | - | lnc_RNA | processed_transcript |
| -474893 | enst00000553489 | sg00000185482 | stac3-204 | 12 | 57248126 | 57251188 | - | mRNA | protein_coding |
| -474894 | enst00000332782 | sg00000185482 | stac3-201 | 12 | 57243458 | 57251187 | - | mRNA | protein_coding |
| -474895 | enst00000557176 | sg00000185482 | stac3-207 | 12 | 57243459 | 57251186 | - | mRNA | nonsense_mediated_decay |
| -474895 | enst00000553294 | sg00000185482 | stac3-203 | 12 | 57249019 | 57251186 | - | lnc_RNA | retained_intron |
| -474896 | enst00000546246 | sg00000185482 | stac3-202 | 12 | 57243654 | 57251185 | - | mRNA | protein_coding |
| -474897 | enst00000554578 | sg00000185482 | stac3-206 | 12 | 57243453 | 57251184 | - | mRNA | protein_coding |
| -477717 | enst00000554003 | sg00000185482 | stac3-205 | 12 | 57244757 | 57248364 | - | lnc_RNA | retained_intron |
| -485366 | enst00000557276 | sg00000185633 | ndufa4l2-207 | 12 | 57239546 | 57240715 | - | lnc_RNA | processed_transcript |
| -485378 | enst00000556234 | sg00000185633 | ndufa4l2-205 | 12 | 57237256 | 57240703 | - | lnc_RNA | processed_transcript |
| -485389 | enst00000393825 | sg00000185633 | ndufa4l2-201 | 12 | 57234905 | 57240692 | - | mRNA | protein_coding |
| -488743 | enst00000554503 | sg00000185633 | ndufa4l2-202 | 12 | 57234903 | 57237338 | - | mRNA | protein_coding |
| -488981 | enst00000555173 | sg00000185633 | ndufa4l2-204 | 12 | 57234911 | 57237100 | - | lnc_RNA | retained_intron |
| -488989 | enst00000556732 | sg00000185633 | ndufa4l2-206 | 12 | 57235080 | 57237092 | - | mRNA | protein_coding |
| -488996 | enst00000554688 | sg00000185633 | ndufa4l2-203 | 12 | 57236189 | 57237085 | - | lnc_RNA | retained_intron |
| -492447 | enst00000556798 | sg00000182199 | shmt2-225 | 12 | 57233634 | 57234244 | + | lnc_RNA | retained_intron |
| -493620 | enst00000557529 | sg00000182199 | shmt2-233 | 12 | 57232461 | 57234694 | + | mRNA | protein_coding |
| -494633 | enst00000555213 | sg00000182199 | shmt2-218 | 12 | 57231448 | 57232487 | + | lnc_RNA | retained_intron |
| -494919 | enst00000553868 | sg00000182199 | shmt2-208 | 12 | 57231162 | 57232399 | + | lnc_RNA | retained_intron |
| -495378 | enst00000556737 | sg00000182199 | shmt2-224 | 12 | 57230703 | 57231906 | + | mRNA | protein_coding |
| -495380 | enst00000553949 | sg00000182199 | shmt2-209 | 12 | 57230701 | 57232261 | + | lnc_RNA | processed_transcript |
| -495687 | enst00000554604 | sg00000182199 | shmt2-214 | 12 | 57230394 | 57232801 | + | mRNA | nonsense_mediated_decay |
| -495697 | enst00000553837 | sg00000182199 | shmt2-207 | 12 | 57230384 | 57234726 | + | mRNA | nonsense_mediated_decay |
| -495713 | enst00000555116 | sg00000182199 | shmt2-217 | 12 | 57230368 | 57234763 | + | mRNA | nonsense_mediated_decay |
| -495721 | enst00000555774 | sg00000182199 | shmt2-222 | 12 | 57230360 | 57234935 | + | mRNA | nonsense_mediated_decay |
| -495721 | enst00000449049 | sg00000182199 | shmt2-203 | 12 | 57230360 | 57234699 | + | mRNA | protein_coding |
| -495721 | enst00000554975 | sg00000182199 | shmt2-216 | 12 | 57230360 | 57232568 | + | mRNA | protein_coding |
| -495727 | enst00000555773 | sg00000182199 | shmt2-221 | 12 | 57230354 | 57231913 | + | mRNA | protein_coding |
| -495753 | enst00000553474 | sg00000182199 | shmt2-205 | 12 | 57230328 | 57234551 | + | mRNA | protein_coding |
| -495801 | enst00000557427 | sg00000182199 | shmt2-230 | 12 | 57230280 | 57232238 | + | mRNA | protein_coding |
| -495806 | enst00000554656 | sg00000182199 | shmt2-215 | 12 | 57230275 | 57232534 | + | lnc_RNA | processed_transcript |
| -495883 | enst00000617433 | sg00000276727 | ac137834.2-201 | 12 | 57229498 | 57230198 | - | lnc_RNA | lncrna |
| -495910 | enst00000557302 | sg00000182199 | shmt2-228 | 12 | 57230171 | 57231185 | + | lnc_RNA | retained_intron |
| -495914 | enst00000553529 | sg00000182199 | shmt2-206 | 12 | 57230167 | 57231906 | + | mRNA | protein_coding |
| -495914 | enst00000554310 | sg00000182199 | shmt2-211 | 12 | 57230167 | 57232241 | + | mRNA | protein_coding |
| -495966 | enst00000557703 | sg00000182199 | shmt2-234 | 12 | 57230115 | 57231890 | + | mRNA | protein_coding |
| -495978 | enst00000557348 | sg00000182199 | shmt2-229 | 12 | 57230103 | 57234476 | + | mRNA | nonsense_mediated_decay |
| -495995 | enst00000414700 | sg00000182199 | shmt2-202 | 12 | 57230086 | 57234726 | + | mRNA | protein_coding |
| -496322 | enst00000557433 | sg00000182199 | shmt2-231 | 12 | 57229759 | 57234726 | + | mRNA | nonsense_mediated_decay |
| -496332 | enst00000555563 | sg00000182199 | shmt2-219 | 12 | 57229749 | 57233239 | + | mRNA | nonsense_mediated_decay |
| -496341 | enst00000557269 | sg00000182199 | shmt2-227 | 12 | 57229740 | 57232773 | + | mRNA | nonsense_mediated_decay |
| -496357 | enst00000556689 | sg00000182199 | shmt2-223 | 12 | 57229724 | 57232822 | + | mRNA | protein_coding |
| -496358 | enst00000555634 | sg00000182199 | shmt2-220 | 12 | 57229723 | 57233811 | + | mRNA | protein_coding |
| -496366 | enst00000553950 | sg00000182199 | shmt2-210 | 12 | 57229715 | 57231769 | + | lnc_RNA | retained_intron |
| -496370 | enst00000328923 | sg00000182199 | shmt2-201 | 12 | 57229711 | 57234935 | + | mRNA | protein_coding |
| -496370 | enst00000557487 | sg00000182199 | shmt2-232 | 12 | 57229711 | 57234726 | + | mRNA | protein_coding |
| -496370 | enst00000554467 | sg00000182199 | shmt2-212 | 12 | 57229711 | 57234726 | + | lnc_RNA | retained_intron |
| -496370 | enst00000553324 | sg00000182199 | shmt2-204 | 12 | 57229711 | 57231979 | + | lnc_RNA | retained_intron |
| -496397 | enst00000554600 | sg00000182199 | shmt2-213 | 12 | 57229684 | 57232572 | + | lnc_RNA | processed_transcript |
| -496420 | enst00000557740 | sg00000182199 | shmt2-235 | 12 | 57229661 | 57231913 | + | lnc_RNA | processed_transcript |
| -496508 | enst00000556825 | sg00000182199 | shmt2-226 | 12 | 57229573 | 57234935 | + | mRNA | nonsense_mediated_decay |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc