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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #47 | 5 | 177984160 | 177986165 | 2005 | 3 | 68 | 3.19496e-22 | 6.7604e-20 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 10077 | enst00000308304 | sg00000175325 | prop1-201 | 5 | 177992235 | 177996242 | - | mRNA | protein_coding |
| -12844 | enst00000505831 | sg00000249129 | suds3p1-201 | 5 | 177971316 | 177972281 | + | pseudogenic_transcript | processed_pseudogene |
| -17156 | enst00000623288 | sg00000280207 | ac106795.5-201 | 5 | 177967004 | 177967457 | + | lnc_RNA | lncrna |
| 20183 | enst00000652374 | sg00000204677 | fam153cp-237 | 5 | 178006348 | 178012208 | + | lnc_RNA | lncrna |
| 20210 | enst00000652765 | sg00000204677 | fam153cp-243 | 5 | 178006375 | 178067446 | + | lnc_RNA | retained_intron |
| 20240 | enst00000504530 | sg00000204677 | fam153cp-202 | 5 | 178006405 | 178039396 | + | lnc_RNA | lncrna |
| 20673 | enst00000505582 | sg00000204677 | fam153cp-204 | 5 | 178006838 | 178036081 | + | lnc_RNA | retained_intron |
| 20752 | enst00000507848 | sg00000204677 | fam153cp-206 | 5 | 178006917 | 178049087 | + | lnc_RNA | lncrna |
| 20825 | enst00000508839 | sg00000204677 | fam153cp-207 | 5 | 178006990 | 178010274 | + | lnc_RNA | lncrna |
| 21527 | enst00000651508 | sg00000204677 | fam153cp-226 | 5 | 178007692 | 178063589 | + | lnc_RNA | lncrna |
| 21650 | enst00000651828 | sg00000204677 | fam153cp-228 | 5 | 178007815 | 178048762 | + | lnc_RNA | lncrna |
| 21841 | enst00000652706 | sg00000204677 | fam153cp-241 | 5 | 178008006 | 178063588 | + | lnc_RNA | retained_intron |
| 21917 | enst00000511189 | sg00000204677 | fam153cp-208 | 5 | 178008082 | 178063588 | + | lnc_RNA | lncrna |
| 21919 | enst00000652372 | sg00000204677 | fam153cp-236 | 5 | 178008084 | 178056278 | + | lnc_RNA | lncrna |
| 21988 | enst00000505394 | sg00000204677 | fam153cp-203 | 5 | 178008153 | 178010333 | + | lnc_RNA | lncrna |
| 22408 | enst00000661980 | sg00000204677 | fam153cp-244 | 5 | 178008573 | 178054325 | + | lnc_RNA | lncrna |
| 22408 | enst00000651840 | sg00000204677 | fam153cp-229 | 5 | 178008573 | 178055228 | + | lnc_RNA | retained_intron |
| 22408 | enst00000652338 | sg00000204677 | fam153cp-235 | 5 | 178008573 | 178055255 | + | lnc_RNA | retained_intron |
| 22408 | enst00000652181 | sg00000204677 | fam153cp-233 | 5 | 178008573 | 178055284 | + | lnc_RNA | lncrna |
| 22408 | enst00000651969 | sg00000204677 | fam153cp-230 | 5 | 178008573 | 178063236 | + | lnc_RNA | lncrna |
| 22408 | enst00000652571 | sg00000204677 | fam153cp-239 | 5 | 178008573 | 178063496 | + | lnc_RNA | lncrna |
| 22408 | enst00000669380 | sg00000204677 | fam153cp-250 | 5 | 178008573 | 178063537 | + | lnc_RNA | lncrna |
| 22408 | enst00000651447 | sg00000204677 | fam153cp-223 | 5 | 178008573 | 178063305 | + | lnc_RNA | lncrna |
| 22408 | enst00000662167 | sg00000204677 | fam153cp-245 | 5 | 178008573 | 178063588 | + | lnc_RNA | lncrna |
| 22408 | enst00000651248 | sg00000204677 | fam153cp-217 | 5 | 178008573 | 178065373 | + | lnc_RNA | lncrna |
| 22408 | enst00000652760 | sg00000204677 | fam153cp-242 | 5 | 178008573 | 178067447 | + | lnc_RNA | retained_intron |
| 22408 | enst00000651496 | sg00000204677 | fam153cp-225 | 5 | 178008573 | 178068260 | + | lnc_RNA | lncrna |
| 22408 | enst00000651413 | sg00000204677 | fam153cp-220 | 5 | 178008573 | 178086529 | + | lnc_RNA | lncrna |
| 22408 | enst00000652262 | sg00000204677 | fam153cp-234 | 5 | 178008573 | 178063570 | + | lnc_RNA | lncrna |
| 22418 | enst00000650901 | sg00000204677 | fam153cp-215 | 5 | 178008583 | 178048871 | + | lnc_RNA | retained_intron |
| 22795 | enst00000668044 | sg00000204677 | fam153cp-249 | 5 | 178008960 | 178063588 | + | lnc_RNA | lncrna |
| 22820 | enst00000398106 | sg00000204677 | fam153cp-201 | 5 | 178008985 | 178047655 | + | lnc_RNA | retained_intron |
| 22877 | enst00000663123 | sg00000204677 | fam153cp-246 | 5 | 178009042 | 178063588 | + | lnc_RNA | retained_intron |
| 22912 | enst00000651697 | sg00000204677 | fam153cp-227 | 5 | 178009077 | 178063588 | + | lnc_RNA | lncrna |
| 23161 | enst00000650646 | sg00000204677 | fam153cp-213 | 5 | 178009326 | 178048959 | + | lnc_RNA | lncrna |
| -30995 | enst00000503263 | sg00000249684 | ac106795.2-204 | 5 | 177953165 | 177957759 | + | lnc_RNA | lncrna |
| -31126 | enst00000659722 | sg00000249684 | ac106795.2-205 | 5 | 177953034 | 177959802 | + | lnc_RNA | lncrna |
| -32212 | enst00000366189 | sg00000249684 | ac106795.2-203 | 5 | 177951948 | 177960149 | + | lnc_RNA | lncrna |
| -32747 | enst00000507072 | sg00000249684 | ac106795.2-202 | 5 | 177951413 | 177963960 | + | lnc_RNA | lncrna |
| -33825 | enst00000502514 | sg00000249684 | ac106795.2-201 | 5 | 177950335 | 177957750 | + | lnc_RNA | lncrna |
| 44359 | enst00000511856 | sg00000204677 | fam153cp-211 | 5 | 178030524 | 178046895 | + | lnc_RNA | lncrna |
| 44371 | enst00000652167 | sg00000204677 | fam153cp-232 | 5 | 178030536 | 178056294 | + | lnc_RNA | lncrna |
| -44538 | enst00000511650 | sg00000250101 | ac106795.3-201 | 5 | 177939622 | 177983054 | + | lnc_RNA | lncrna |
| 45603 | enst00000652694 | sg00000204677 | fam153cp-240 | 5 | 178031768 | 178063570 | + | lnc_RNA | retained_intron |
| 46765 | enst00000667131 | sg00000204677 | fam153cp-248 | 5 | 178032930 | 178063256 | + | lnc_RNA | lncrna |
| 46765 | enst00000663505 | sg00000204677 | fam153cp-247 | 5 | 178032930 | 178065383 | + | lnc_RNA | lncrna |
| 46765 | enst00000651417 | sg00000204677 | fam153cp-221 | 5 | 178032930 | 178055253 | + | lnc_RNA | retained_intron |
| 52229 | enst00000651398 | sg00000204677 | fam153cp-218 | 5 | 178038394 | 178063588 | + | lnc_RNA | retained_intron |
| 54968 | enst00000650756 | sg00000204677 | fam153cp-214 | 5 | 178041133 | 178042680 | + | lnc_RNA | retained_intron |
| 59188 | enst00000651442 | sg00000204677 | fam153cp-222 | 5 | 178045353 | 178047262 | + | lnc_RNA | retained_intron |
| 61892 | enst00000650916 | sg00000204677 | fam153cp-216 | 5 | 178048057 | 178055237 | + | lnc_RNA | lncrna |
| 62787 | enst00000511511 | sg00000204677 | fam153cp-209 | 5 | 178048952 | 178063321 | + | lnc_RNA | lncrna |
| 62962 | enst00000506096 | sg00000204677 | fam153cp-205 | 5 | 178049127 | 178056232 | + | lnc_RNA | lncrna |
| 63948 | enst00000651406 | sg00000204677 | fam153cp-219 | 5 | 178050113 | 178056242 | + | lnc_RNA | retained_intron |
| 65542 | enst00000652057 | sg00000204677 | fam153cp-231 | 5 | 178051707 | 178056175 | + | lnc_RNA | retained_intron |
| 66367 | enst00000652464 | sg00000204677 | fam153cp-238 | 5 | 178052532 | 178063538 | + | lnc_RNA | lncrna |
| 66500 | enst00000511819 | sg00000204677 | fam153cp-210 | 5 | 178052665 | 178063312 | + | lnc_RNA | lncrna |
| 67707 | enst00000515878 | sg00000204677 | fam153cp-212 | 5 | 178053872 | 178055559 | + | lnc_RNA | lncrna |
| 69439 | enst00000477964 | sg00000218227 | ac136632.1-201 | 5 | 178055604 | 178056194 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 79196 | enst00000651483 | sg00000204677 | fam153cp-224 | 5 | 178065361 | 178068159 | + | lnc_RNA | retained_intron |
| -98900 | enst00000503449 | sg00000170089 | ac106795.1-213 | 5 | 177885260 | 177932277 | + | lnc_RNA | processed_transcript |
| -101474 | enst00000514635 | sg00000170089 | ac106795.1-212 | 5 | 177882686 | 177917267 | + | lnc_RNA | processed_transcript |
| -101717 | enst00000358442 | sg00000170089 | ac106795.1-211 | 5 | 177882443 | 177921387 | + | lnc_RNA | processed_transcript |
| -101769 | enst00000504756 | sg00000170089 | ac106795.1-210 | 5 | 177882391 | 177883000 | + | lnc_RNA | retained_intron |
| -105370 | enst00000511074 | sg00000170089 | ac106795.1-209 | 5 | 177878790 | 177883701 | + | lnc_RNA | processed_transcript |
| -105629 | enst00000502601 | sg00000170089 | ac106795.1-208 | 5 | 177878531 | 177882661 | + | lnc_RNA | retained_intron |
| -107905 | enst00000507037 | sg00000170089 | ac106795.1-207 | 5 | 177876255 | 177950732 | + | lnc_RNA | processed_transcript |
| -107905 | enst00000515525 | sg00000170089 | ac106795.1-206 | 5 | 177876255 | 177882505 | + | lnc_RNA | processed_transcript |
| -108565 | enst00000512851 | sg00000170089 | ac106795.1-205 | 5 | 177875595 | 177883831 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -108638 | enst00000506672 | sg00000170089 | ac106795.1-204 | 5 | 177875522 | 177884272 | + | lnc_RNA | processed_transcript |
| -112933 | enst00000667415 | sg00000249186 | ac140125.3-204 | 5 | 177856262 | 177871227 | - | lnc_RNA | lncrna |
| -112966 | enst00000504362 | sg00000249186 | ac140125.3-202 | 5 | 177864393 | 177871194 | - | lnc_RNA | lncrna |
| -112970 | enst00000505248 | sg00000249186 | ac140125.3-201 | 5 | 177857945 | 177871190 | - | lnc_RNA | lncrna |
| -112977 | enst00000504214 | sg00000249186 | ac140125.3-203 | 5 | 177864565 | 177871183 | - | lnc_RNA | lncrna |
| 127367 | enst00000274605 | sg00000145911 | n4bp3-201 | 5 | 178113532 | 178126081 | + | mRNA | protein_coding |
| 144831 | enst00000515098 | sg00000145916 | rmnd5b-210 | 5 | 178130996 | 178150565 | + | mRNA | protein_coding |
| 144846 | enst00000507575 | sg00000145916 | rmnd5b-204 | 5 | 178131011 | 178148549 | + | lnc_RNA | retained_intron |
| 144849 | enst00000313386 | sg00000145916 | rmnd5b-201 | 5 | 178131014 | 178150568 | + | mRNA | protein_coding |
| 144849 | enst00000502814 | sg00000145916 | rmnd5b-202 | 5 | 178131014 | 178142908 | + | mRNA | protein_coding |
| 144852 | enst00000512663 | sg00000145916 | rmnd5b-207 | 5 | 178131017 | 178142976 | + | mRNA | nonsense_mediated_decay |
| 144860 | enst00000507457 | sg00000145916 | rmnd5b-203 | 5 | 178131025 | 178143644 | + | mRNA | protein_coding |
| 144870 | enst00000508647 | sg00000145916 | rmnd5b-206 | 5 | 178131035 | 178142613 | + | mRNA | protein_coding |
| -146514 | enst00000510464 | sg00000214351 | or1x5p-201 | 5 | 177836434 | 177837646 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 149048 | enst00000542098 | sg00000145916 | rmnd5b-212 | 5 | 178135213 | 178148570 | + | mRNA | protein_coding |
| -151408 | enst00000510692 | sg00000170089 | ac106795.1-203 | 5 | 177832752 | 177882516 | + | lnc_RNA | processed_transcript |
| 151943 | enst00000512811 | sg00000145916 | rmnd5b-208 | 5 | 178138108 | 178143709 | + | mRNA | nonsense_mediated_decay |
| 155175 | enst00000515360 | sg00000145916 | rmnd5b-211 | 5 | 178141340 | 178148566 | + | lnc_RNA | retained_intron |
| 155507 | enst00000513162 | sg00000145916 | rmnd5b-209 | 5 | 178141672 | 178149991 | + | lnc_RNA | retained_intron |
| 159805 | enst00000507937 | sg00000145916 | rmnd5b-205 | 5 | 178145970 | 178148540 | + | lnc_RNA | retained_intron |
| 167414 | enst00000502263 | sg00000145912 | nhp2-203 | 5 | 178150531 | 178153579 | - | mRNA | protein_coding |
| 167664 | enst00000314397 | sg00000145912 | nhp2-202 | 5 | 178149482 | 178153829 | - | mRNA | protein_coding |
| 167717 | enst00000514354 | sg00000145912 | nhp2-206 | 5 | 178150639 | 178153882 | - | mRNA | protein_coding |
| 167719 | enst00000510363 | sg00000145912 | nhp2-204 | 5 | 178153222 | 178153884 | - | lnc_RNA | retained_intron |
| 167729 | enst00000511078 | sg00000145912 | nhp2-205 | 5 | 178150826 | 178153894 | - | mRNA | protein_coding |
| 167802 | enst00000274606 | sg00000145912 | nhp2-201 | 5 | 178149460 | 178153967 | - | mRNA | protein_coding |
| -174679 | enst00000506082 | sg00000170089 | ac106795.1-202 | 5 | 177809481 | 177882383 | + | lnc_RNA | processed_transcript |
| -174753 | enst00000515065 | sg00000170089 | ac106795.1-201 | 5 | 177809407 | 177883916 | + | lnc_RNA | processed_transcript |
| 179537 | enst00000512891 | sg00000251211 | ac136632.2-201 | 5 | 178165702 | 178166562 | + | pseudogenic_transcript | processed_pseudogene |
| -180816 | enst00000515739 | sg00000248943 | ac140125.1-201 | 5 | 177801204 | 177803344 | - | lnc_RNA | lncrna |
| -200762 | enst00000510276 | sg00000170074 | fam153a-216 | 5 | 177722295 | 177783398 | - | mRNA | protein_coding |
| -200796 | enst00000503136 | sg00000170074 | fam153a-204 | 5 | 177762929 | 177783364 | - | lnc_RNA | processed_transcript |
| -201195 | enst00000503567 | sg00000170074 | fam153a-205 | 5 | 177747724 | 177782965 | - | mRNA | protein_coding |
| 201267 | enst00000463439 | sg00000244234 | gmcl2-201 | 5 | 178184503 | 178187432 | - | mRNA | protein_coding |
| -201323 | enst00000505531 | sg00000170074 | fam153a-209 | 5 | 177724159 | 177782837 | - | mRNA | protein_coding |
| -201347 | enst00000506229 | sg00000170074 | fam153a-212 | 5 | 177779556 | 177782813 | - | lnc_RNA | processed_transcript |
| -201963 | enst00000502515 | sg00000249109 | ac140125.2-201 | 5 | 177782197 | 177794396 | + | lnc_RNA | lncrna |
| -202476 | enst00000513363 | sg00000170074 | fam153a-219 | 5 | 177779497 | 177781684 | - | lnc_RNA | processed_transcript |
| -203315 | enst00000393518 | sg00000170074 | fam153a-202 | 5 | 177723951 | 177780845 | - | mRNA | protein_coding |
| -203484 | enst00000440605 | sg00000170074 | fam153a-203 | 5 | 177723364 | 177780676 | - | mRNA | protein_coding |
| -203527 | enst00000513554 | sg00000170074 | fam153a-220 | 5 | 177723577 | 177780633 | - | mRNA | protein_coding |
| -203695 | enst00000360669 | sg00000170074 | fam153a-201 | 5 | 177711069 | 177780465 | - | mRNA | nonsense_mediated_decay |
| 218368 | enst00000358344 | sg00000197451 | hnrnpab-202 | 5 | 178204533 | 178211163 | + | mRNA | protein_coding |
| 218368 | enst00000506339 | sg00000197451 | hnrnpab-206 | 5 | 178204533 | 178211155 | + | mRNA | protein_coding |
| 218374 | enst00000355836 | sg00000197451 | hnrnpab-201 | 5 | 178204539 | 178211142 | + | mRNA | protein_coding |
| 218376 | enst00000514633 | sg00000197451 | hnrnpab-207 | 5 | 178204541 | 178211119 | + | mRNA | protein_coding |
| 218379 | enst00000515193 | sg00000197451 | hnrnpab-208 | 5 | 178204544 | 178211155 | + | mRNA | protein_coding |
| 218383 | enst00000506259 | sg00000197451 | hnrnpab-205 | 5 | 178204548 | 178211149 | + | mRNA | protein_coding |
| 218406 | enst00000504898 | sg00000197451 | hnrnpab-204 | 5 | 178204571 | 178211142 | + | mRNA | protein_coding |
| 219403 | enst00000504796 | sg00000197451 | hnrnpab-203 | 5 | 178205568 | 178206866 | + | lnc_RNA | retained_intron |
| -230863 | enst00000503845 | sg00000170074 | fam153a-206 | 5 | 177739615 | 177753297 | - | mRNA | nonsense_mediated_decay |
| -230864 | enst00000504518 | sg00000170074 | fam153a-208 | 5 | 177739635 | 177753296 | - | mRNA | protein_coding |
| -230885 | enst00000506354 | sg00000170074 | fam153a-213 | 5 | 177747527 | 177753275 | - | lnc_RNA | retained_intron |
| -230885 | enst00000515787 | sg00000170074 | fam153a-222 | 5 | 177737048 | 177753275 | - | mRNA | nonsense_mediated_decay |
| -230897 | enst00000505683 | sg00000170074 | fam153a-210 | 5 | 177740193 | 177753263 | - | lnc_RNA | processed_transcript |
| -230897 | enst00000507615 | sg00000170074 | fam153a-214 | 5 | 177747454 | 177753263 | - | lnc_RNA | retained_intron |
| -230954 | enst00000614127 | sg00000170074 | fam153a-223 | 5 | 177723365 | 177753206 | - | mRNA | protein_coding |
| -233766 | enst00000503909 | sg00000170074 | fam153a-207 | 5 | 177741294 | 177750394 | - | lnc_RNA | processed_transcript |
| 236311 | enst00000393488 | sg00000175309 | phykpl-203 | 5 | 178208623 | 178222476 | - | mRNA | nonsense_mediated_decay |
| 236769 | enst00000506045 | sg00000175309 | phykpl-214 | 5 | 178211890 | 178222934 | - | mRNA | nonsense_mediated_decay |
| 238331 | enst00000504096 | sg00000175309 | phykpl-212 | 5 | 178223388 | 178224496 | - | lnc_RNA | retained_intron |
| 238845 | enst00000476487 | sg00000175309 | phykpl-206 | 5 | 178210968 | 178225010 | - | lnc_RNA | retained_intron |
| -238946 | enst00000512612 | sg00000170074 | fam153a-218 | 5 | 177731574 | 177745214 | - | lnc_RNA | processed_transcript |
| 239914 | enst00000481436 | sg00000175309 | phykpl-207 | 5 | 178208499 | 178226079 | - | lnc_RNA | retained_intron |
| 243884 | enst00000514424 | sg00000175309 | phykpl-218 | 5 | 178224331 | 178230049 | - | lnc_RNA | retained_intron |
| 243908 | enst00000510913 | sg00000175309 | phykpl-215 | 5 | 178222476 | 178230073 | - | mRNA | nonsense_mediated_decay |
| 244141 | enst00000506001 | sg00000175309 | phykpl-213 | 5 | 178224512 | 178230306 | - | lnc_RNA | retained_intron |
| 244155 | enst00000510991 | sg00000175309 | phykpl-216 | 5 | 178208654 | 178230320 | - | lnc_RNA | retained_intron |
| 244775 | enst00000481811 | sg00000175309 | phykpl-208 | 5 | 178208584 | 178230940 | - | lnc_RNA | processed_transcript |
| 246376 | enst00000511716 | sg00000175309 | phykpl-217 | 5 | 178226466 | 178232541 | - | lnc_RNA | processed_transcript |
| 246406 | enst00000476170 | sg00000175309 | phykpl-205 | 5 | 178228125 | 178232571 | - | mRNA | protein_coding |
| 246465 | enst00000323594 | sg00000175309 | phykpl-202 | 5 | 178224449 | 178232630 | - | mRNA | protein_coding |
| 246603 | enst00000493197 | sg00000175309 | phykpl-210 | 5 | 178208639 | 178232768 | - | mRNA | nonsense_mediated_decay |
| 246608 | enst00000494126 | sg00000175309 | phykpl-211 | 5 | 178208644 | 178232773 | - | lnc_RNA | retained_intron |
| 246625 | enst00000474052 | sg00000175309 | phykpl-204 | 5 | 178208587 | 178232790 | - | mRNA | nonsense_mediated_decay |
| 246626 | enst00000489262 | sg00000175309 | phykpl-209 | 5 | 178208584 | 178232791 | - | lnc_RNA | retained_intron |
| 246637 | enst00000308158 | sg00000175309 | phykpl-201 | 5 | 178208471 | 178232802 | - | mRNA | protein_coding |
| -261004 | enst00000512544 | sg00000170074 | fam153a-217 | 5 | 177722336 | 177723156 | - | lnc_RNA | processed_transcript |
| -266908 | enst00000506011 | sg00000170074 | fam153a-211 | 5 | 177707981 | 177717252 | - | lnc_RNA | processed_transcript |
| -267797 | enst00000509607 | sg00000170074 | fam153a-215 | 5 | 177713025 | 177716363 | - | lnc_RNA | processed_transcript |
| -270008 | enst00000514899 | sg00000170074 | fam153a-221 | 5 | 177713069 | 177714152 | - | lnc_RNA | processed_transcript |
| 279669 | enst00000646779 | sg00000050767 | col23a1-204 | 5 | 178263208 | 178265834 | - | mRNA | protein_coding |
| -301866 | enst00000509363 | sg00000249849 | ac138819.1-201 | 5 | 177682294 | 177713969 | + | lnc_RNA | lncrna |
| -311951 | enst00000515045 | sg00000246596 | ac139795.1-203 | 5 | 177632075 | 177672209 | - | lnc_RNA | processed_transcript |
| -312011 | enst00000500444 | sg00000246596 | ac139795.1-202 | 5 | 177626436 | 177672149 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 320769 | enst00000407622 | sg00000050767 | col23a1-202 | 5 | 178237620 | 178306934 | - | mRNA | protein_coding |
| -352625 | enst00000499314 | sg00000246596 | ac139795.1-201 | 5 | 177619059 | 177631535 | - | lnc_RNA | processed_transcript |
| 358678 | enst00000604356 | sg00000271681 | ac136601.2-201 | 5 | 178344843 | 178345316 | + | pseudogenic_transcript | processed_pseudogene |
| 364702 | enst00000521803 | sg00000253698 | ac136601.1-201 | 5 | 178350867 | 178352250 | + | lnc_RNA | lncrna |
| -366614 | enst00000656340 | sg00000247679 | ac139795.2-203 | 5 | 177617546 | 177619746 | + | lnc_RNA | lncrna |
| -372907 | enst00000499900 | sg00000247679 | ac139795.2-201 | 5 | 177611253 | 177619754 | + | lnc_RNA | lncrna |
| -372920 | enst00000665249 | sg00000247679 | ac139795.2-202 | 5 | 177611240 | 177619754 | + | lnc_RNA | lncrna |
| -376795 | enst00000515353 | sg00000027847 | b4galt7-208 | 5 | 177607365 | 177610328 | + | lnc_RNA | retained_intron |
| -378369 | enst00000505145 | sg00000027847 | b4galt7-203 | 5 | 177605791 | 177610266 | + | lnc_RNA | retained_intron |
| -379848 | enst00000507061 | sg00000027847 | b4galt7-206 | 5 | 177604312 | 177605224 | + | mRNA | protein_coding |
| -383930 | enst00000505468 | sg00000027847 | b4galt7-205 | 5 | 177600230 | 177607338 | + | mRNA | protein_coding |
| -383954 | enst00000510761 | sg00000027847 | b4galt7-207 | 5 | 177600206 | 177607357 | + | mRNA | protein_coding |
| -383998 | enst00000505433 | sg00000027847 | b4galt7-204 | 5 | 177600162 | 177609707 | + | mRNA | nonsense_mediated_decay |
| -384028 | enst00000029410 | sg00000027847 | b4galt7-201 | 5 | 177600132 | 177610330 | + | mRNA | protein_coding |
| -384028 | enst00000502420 | sg00000027847 | b4galt7-202 | 5 | 177600132 | 177608214 | + | lnc_RNA | retained_intron |
| -390938 | enst00000510499 | sg00000184840 | tmed9-205 | 5 | 177593222 | 177595386 | + | lnc_RNA | retained_intron |
| -391510 | enst00000507578 | sg00000184840 | tmed9-203 | 5 | 177592650 | 177594195 | + | lnc_RNA | processed_transcript |
| -391672 | enst00000513799 | sg00000184840 | tmed9-206 | 5 | 177592488 | 177595577 | + | lnc_RNA | retained_intron |
| 391759 | enst00000492969 | sg00000242341 | rn7sl646p-201 | 5 | 178377924 | 178378220 | + | ncRNA | misc_rna |
| -391888 | enst00000507723 | sg00000184840 | tmed9-204 | 5 | 177592272 | 177595420 | + | lnc_RNA | retained_intron |
| -391943 | enst00000505521 | sg00000184840 | tmed9-202 | 5 | 177592217 | 177594115 | + | lnc_RNA | retained_intron |
| -391957 | enst00000332598 | sg00000184840 | tmed9-201 | 5 | 177592203 | 177597242 | + | mRNA | protein_coding |
| -429336 | enst00000606358 | sg00000272459 | ac139795.3-201 | 5 | 177554824 | 177555364 | + | lnc_RNA | lncrna |
| -429597 | enst00000514747 | sg00000146067 | fam193b-217 | 5 | 177519789 | 177554563 | - | mRNA | protein_coding |
| -429619 | enst00000506955 | sg00000146067 | fam193b-208 | 5 | 177519790 | 177554541 | - | mRNA | nonsense_mediated_decay |
| -429702 | enst00000508298 | sg00000146067 | fam193b-211 | 5 | 177525197 | 177554458 | - | lnc_RNA | processed_transcript |
| -429813 | enst00000507587 | sg00000146067 | fam193b-210 | 5 | 177538911 | 177554347 | - | mRNA | nonsense_mediated_decay |
| -430394 | enst00000510429 | sg00000146067 | fam193b-213 | 5 | 177538006 | 177553766 | - | mRNA | protein_coding |
| -430894 | enst00000506432 | sg00000146067 | fam193b-206 | 5 | 177538085 | 177553266 | - | mRNA | protein_coding |
| -444809 | enst00000502403 | sg00000146067 | fam193b-201 | 5 | 177537987 | 177539351 | - | mRNA | protein_coding |
| -445094 | enst00000510479 | sg00000146067 | fam193b-214 | 5 | 177519790 | 177539066 | - | mRNA | nonsense_mediated_decay |
| -446141 | enst00000515394 | sg00000146067 | fam193b-218 | 5 | 177536304 | 177538019 | - | lnc_RNA | retained_intron |
| -447770 | enst00000510163 | sg00000146067 | fam193b-212 | 5 | 177519791 | 177536390 | - | mRNA | nonsense_mediated_decay |
| -451548 | enst00000506064 | sg00000146067 | fam193b-205 | 5 | 177531338 | 177532612 | - | lnc_RNA | processed_transcript |
| -451627 | enst00000524677 | sg00000146067 | fam193b-219 | 5 | 177519792 | 177532533 | - | mRNA | protein_coding |
| -452326 | enst00000513502 | sg00000146067 | fam193b-216 | 5 | 177525054 | 177531834 | - | lnc_RNA | retained_intron |
| 456929 | enst00000501834 | sg00000245688 | ac008659.1-201 | 5 | 178438681 | 178443094 | - | lnc_RNA | lncrna |
| -458673 | enst00000505569 | sg00000146067 | fam193b-204 | 5 | 177519789 | 177525487 | - | lnc_RNA | retained_intron |
| -459666 | enst00000507212 | sg00000146067 | fam193b-209 | 5 | 177520056 | 177524494 | - | mRNA | nonsense_mediated_decay |
| -459739 | enst00000505241 | sg00000146067 | fam193b-203 | 5 | 177523180 | 177524421 | - | lnc_RNA | processed_transcript |
| -460147 | enst00000513282 | sg00000146067 | fam193b-215 | 5 | 177519789 | 177524013 | - | mRNA | nonsense_mediated_decay |
| -461161 | enst00000504130 | sg00000146067 | fam193b-202 | 5 | 177519931 | 177522999 | - | lnc_RNA | processed_transcript |
| -461998 | enst00000506879 | sg00000146067 | fam193b-207 | 5 | 177519791 | 177522162 | - | lnc_RNA | retained_intron |
| -467199 | enst00000510171 | sg00000183258 | ddx41-211 | 5 | 177515772 | 177516961 | - | mRNA | nonsense_mediated_decay |
| -467199 | enst00000330503 | sg00000183258 | ddx41-201 | 5 | 177511577 | 177516961 | - | mRNA | protein_coding |
| -467199 | enst00000503078 | sg00000183258 | ddx41-202 | 5 | 177511578 | 177516961 | - | lnc_RNA | retained_intron |
| -467210 | enst00000506965 | sg00000183258 | ddx41-206 | 5 | 177515022 | 177516950 | - | lnc_RNA | processed_transcript |
| -467210 | enst00000509576 | sg00000183258 | ddx41-210 | 5 | 177514981 | 177516950 | - | mRNA | nonsense_mediated_decay |
| -467210 | enst00000505081 | sg00000183258 | ddx41-205 | 5 | 177511578 | 177516950 | - | lnc_RNA | retained_intron |
| -467215 | enst00000625286 | sg00000183258 | ddx41-218 | 5 | 177516505 | 177516945 | - | mRNA | protein_coding |
| -467215 | enst00000629036 | sg00000183258 | ddx41-219 | 5 | 177515305 | 177516945 | - | mRNA | protein_coding |
| -467215 | enst00000507955 | sg00000183258 | ddx41-208 | 5 | 177511577 | 177516945 | - | mRNA | nonsense_mediated_decay |
| -467225 | enst00000512431 | sg00000183258 | ddx41-215 | 5 | 177514929 | 177516935 | - | lnc_RNA | retained_intron |
| -467226 | enst00000652623 | sg00000183258 | ddx41-223 | 5 | 177511638 | 177516934 | - | lnc_RNA | retained_intron |
| -467265 | enst00000515562 | sg00000183258 | ddx41-217 | 5 | 177515341 | 177516895 | - | lnc_RNA | retained_intron |
| -467281 | enst00000650742 | sg00000183258 | ddx41-220 | 5 | 177512103 | 177516879 | - | lnc_RNA | retained_intron |
| -467522 | enst00000652618 | sg00000183258 | ddx41-222 | 5 | 177511628 | 177516638 | - | lnc_RNA | retained_intron |
| -467836 | enst00000504781 | sg00000183258 | ddx41-203 | 5 | 177514938 | 177516324 | - | mRNA | nonsense_mediated_decay |
| -468429 | enst00000508279 | sg00000183258 | ddx41-209 | 5 | 177513399 | 177515731 | - | mRNA | nonsense_mediated_decay |
| -468807 | enst00000511040 | sg00000183258 | ddx41-212 | 5 | 177513072 | 177515353 | - | lnc_RNA | retained_intron |
| -468827 | enst00000507900 | sg00000183258 | ddx41-207 | 5 | 177511600 | 177515333 | - | lnc_RNA | retained_intron |
| -469121 | enst00000513562 | sg00000183258 | ddx41-216 | 5 | 177513435 | 177515039 | - | lnc_RNA | retained_intron |
| -469414 | enst00000504807 | sg00000183258 | ddx41-204 | 5 | 177512496 | 177514746 | - | lnc_RNA | retained_intron |
| -469517 | enst00000652565 | sg00000183258 | ddx41-221 | 5 | 177511596 | 177514643 | - | lnc_RNA | processed_transcript |
| -470376 | enst00000512027 | sg00000183258 | ddx41-213 | 5 | 177513002 | 177513784 | - | lnc_RNA | retained_intron |
| -471615 | enst00000512334 | sg00000183258 | ddx41-214 | 5 | 177511577 | 177512545 | - | lnc_RNA | retained_intron |
| -472886 | enst00000509310 | sg00000146094 | dok3-209 | 5 | 177508478 | 177511274 | - | mRNA | protein_coding |
| -472893 | enst00000510389 | sg00000146094 | dok3-211 | 5 | 177509502 | 177511267 | - | mRNA | protein_coding |
| -473775 | enst00000312943 | sg00000146094 | dok3-201 | 5 | 177501907 | 177510385 | - | mRNA | protein_coding |
| -473778 | enst00000502380 | sg00000146094 | dok3-206 | 5 | 177508784 | 177510382 | - | lnc_RNA | retained_intron |
| -473778 | enst00000501403 | sg00000146094 | dok3-205 | 5 | 177503784 | 177510382 | - | mRNA | protein_coding |
| -473778 | enst00000377112 | sg00000146094 | dok3-203 | 5 | 177502088 | 177510382 | - | mRNA | protein_coding |
| -474303 | enst00000510898 | sg00000146094 | dok3-212 | 5 | 177503748 | 177509857 | - | mRNA | protein_coding |
| -474303 | enst00000357198 | sg00000146094 | dok3-202 | 5 | 177503750 | 177509857 | - | mRNA | protein_coding |
| -474314 | enst00000510380 | sg00000146094 | dok3-210 | 5 | 177504747 | 177509846 | - | mRNA | protein_coding |
| -474331 | enst00000506493 | sg00000146094 | dok3-208 | 5 | 177505013 | 177509829 | - | mRNA | protein_coding |
| -474334 | enst00000512660 | sg00000146094 | dok3-213 | 5 | 177509166 | 177509826 | - | lnc_RNA | retained_intron |
| -474334 | enst00000502885 | sg00000146094 | dok3-207 | 5 | 177505051 | 177509826 | - | mRNA | protein_coding |
| -475283 | enst00000500323 | sg00000146094 | dok3-204 | 5 | 177502088 | 177508877 | - | lnc_RNA | retained_intron |
| -486554 | enst00000463411 | sg00000196923 | pdlim7-206 | 5 | 177491759 | 177497606 | - | lnc_RNA | retained_intron |
| -486556 | enst00000355841 | sg00000196923 | pdlim7-202 | 5 | 177483394 | 177497604 | - | mRNA | protein_coding |
| -486559 | enst00000486828 | sg00000196923 | pdlim7-207 | 5 | 177483398 | 177497601 | - | mRNA | nonsense_mediated_decay |
| -486559 | enst00000393546 | sg00000196923 | pdlim7-204 | 5 | 177491010 | 177497601 | - | mRNA | protein_coding |
| -486574 | enst00000505074 | sg00000196923 | pdlim7-213 | 5 | 177489811 | 177497586 | - | mRNA | protein_coding |
| -486577 | enst00000393551 | sg00000196923 | pdlim7-205 | 5 | 177487897 | 177497583 | - | mRNA | protein_coding |
| -486587 | enst00000355572 | sg00000196923 | pdlim7-201 | 5 | 177490246 | 177497573 | - | mRNA | protein_coding |
| -486599 | enst00000493815 | sg00000196923 | pdlim7-208 | 5 | 177483394 | 177497561 | - | mRNA | nonsense_mediated_decay |
| -486599 | enst00000359895 | sg00000196923 | pdlim7-203 | 5 | 177483394 | 177497561 | - | mRNA | protein_coding |
| -487283 | enst00000506537 | sg00000196923 | pdlim7-216 | 5 | 177492413 | 177496877 | - | mRNA | protein_coding |
| -487329 | enst00000506161 | sg00000196923 | pdlim7-215 | 5 | 177491025 | 177496831 | - | mRNA | protein_coding |
| -487733 | enst00000503827 | sg00000196923 | pdlim7-210 | 5 | 177491096 | 177496427 | - | mRNA | nonsense_mediated_decay |
| -489165 | enst00000506025 | sg00000248996 | ac145098.1-201 | 5 | 177494995 | 177503647 | + | lnc_RNA | lncrna |
| -491190 | enst00000503346 | sg00000196923 | pdlim7-209 | 5 | 177491073 | 177492970 | - | lnc_RNA | retained_intron |
| -491588 | enst00000504318 | sg00000196923 | pdlim7-211 | 5 | 177491072 | 177492572 | - | lnc_RNA | retained_intron |
| -499146 | enst00000505746 | sg00000196923 | pdlim7-214 | 5 | 177483875 | 177485014 | - | lnc_RNA | processed_transcript |
| -499687 | enst00000504380 | sg00000196923 | pdlim7-212 | 5 | 177483695 | 177484473 | - | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc