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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #52 | 1 | 976586 | 978571 | 1985 | 3 | 55 | 4.25133e-21 | 8.13067e-19 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000479361 | sg00000187642 | perm1-203 | 1 | 975205 | 976641 | - | lnc_RNA | retained_intron |
| 2458 | enst00000433179 | sg00000187642 | perm1-202 | 1 | 975205 | 981029 | - | mRNA | protein_coding |
| -3074 | enst00000491024 | sg00000187583 | plekhn1-205 | 1 | 973512 | 975865 | + | mRNA | protein_coding |
| 3522 | enst00000341290 | sg00000187642 | perm1-201 | 1 | 975204 | 982093 | - | mRNA | protein_coding |
| -5711 | enst00000480267 | sg00000187583 | plekhn1-204 | 1 | 970875 | 971523 | + | lnc_RNA | retained_intron |
| -10084 | enst00000379409 | sg00000187583 | plekhn1-202 | 1 | 966502 | 975008 | + | mRNA | protein_coding |
| -10084 | enst00000379407 | sg00000187583 | plekhn1-201 | 1 | 966502 | 975008 | + | mRNA | protein_coding |
| -10104 | enst00000379410 | sg00000187583 | plekhn1-203 | 1 | 966482 | 975865 | + | mRNA | protein_coding |
| -13034 | enst00000481067 | sg00000187961 | klhl17-204 | 1 | 963552 | 964164 | + | lnc_RNA | retained_intron |
| -13859 | enst00000466300 | sg00000187961 | klhl17-203 | 1 | 962727 | 964530 | + | mRNA | nonsense_mediated_decay |
| -15137 | enst00000463212 | sg00000187961 | klhl17-202 | 1 | 961449 | 962478 | + | lnc_RNA | retained_intron |
| -15947 | enst00000622660 | sg00000187961 | klhl17-205 | 1 | 960639 | 965602 | + | mRNA | protein_coding |
| -16002 | enst00000338591 | sg00000187961 | klhl17-201 | 1 | 960584 | 965719 | + | mRNA | protein_coding |
| -17277 | enst00000487214 | sg00000188976 | noc2l-205 | 1 | 954426 | 959309 | - | lnc_RNA | processed_transcript |
| -17330 | enst00000327044 | sg00000188976 | noc2l-201 | 1 | 944203 | 959256 | - | mRNA | protein_coding |
| -17330 | enst00000469563 | sg00000188976 | noc2l-202 | 1 | 958246 | 959256 | - | lnc_RNA | retained_intron |
| -18128 | enst00000477976 | sg00000188976 | noc2l-203 | 1 | 944205 | 958458 | - | lnc_RNA | retained_intron |
| 19480 | enst00000606034 | sg00000272512 | al645608.7-201 | 1 | 995966 | 998051 | - | lnc_RNA | lncrna |
| 21410 | enst00000484667 | sg00000188290 | hes4-204 | 1 | 998970 | 999981 | - | mRNA | protein_coding |
| 21525 | enst00000481869 | sg00000188290 | hes4-203 | 1 | 998966 | 1000096 | - | lnc_RNA | retained_intron |
| 21540 | enst00000304952 | sg00000188290 | hes4-201 | 1 | 998964 | 1000111 | - | mRNA | protein_coding |
| 21601 | enst00000428771 | sg00000188290 | hes4-202 | 1 | 998962 | 1000172 | - | mRNA | protein_coding |
| 22567 | enst00000624697 | sg00000187608 | isg15-202 | 1 | 1001138 | 1014540 | + | mRNA | protein_coding |
| 22574 | enst00000624652 | sg00000187608 | isg15-201 | 1 | 1001145 | 1014435 | + | mRNA | protein_coding |
| -29526 | enst00000483767 | sg00000188976 | noc2l-204 | 1 | 944204 | 947060 | - | lnc_RNA | retained_intron |
| 29658 | enst00000423619 | sg00000231702 | al645608.3-201 | 1 | 1008076 | 1008229 | - | pseudogenic_transcript | processed_pseudogene |
| -31024 | enst00000496938 | sg00000188976 | noc2l-206 | 1 | 945319 | 945562 | - | lnc_RNA | processed_transcript |
| -34420 | enst00000464948 | sg00000187634 | samd11-206 | 1 | 942166 | 942892 | + | lnc_RNA | retained_intron |
| -34483 | enst00000466827 | sg00000187634 | samd11-207 | 1 | 942103 | 942802 | + | lnc_RNA | retained_intron |
| 34622 | enst00000458555 | sg00000224969 | al645608.1-201 | 1 | 1011997 | 1013193 | - | lnc_RNA | lncrna |
| 34926 | enst00000649529 | sg00000187608 | isg15-203 | 1 | 1013497 | 1014540 | + | mRNA | protein_coding |
| -35510 | enst00000474461 | sg00000187634 | samd11-208 | 1 | 941076 | 942994 | + | lnc_RNA | retained_intron |
| -36240 | enst00000478729 | sg00000187634 | samd11-209 | 1 | 940346 | 942173 | + | lnc_RNA | processed_transcript |
| -37311 | enst00000455979 | sg00000187634 | samd11-205 | 1 | 939275 | 944259 | + | mRNA | protein_coding |
| 41549 | enst00000379370 | sg00000188157 | agrn-201 | 1 | 1020120 | 1056116 | + | mRNA | protein_coding |
| 41552 | enst00000620552 | sg00000188157 | agrn-208 | 1 | 1020123 | 1056118 | + | mRNA | protein_coding |
| -46274 | enst00000341065 | sg00000187634 | samd11-201 | 1 | 930312 | 944575 | + | mRNA | protein_coding |
| -50845 | enst00000618323 | sg00000187634 | samd11-214 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -50845 | enst00000616125 | sg00000187634 | samd11-211 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -50845 | enst00000616016 | sg00000187634 | samd11-210 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -50845 | enst00000618779 | sg00000187634 | samd11-215 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -50845 | enst00000620200 | sg00000187634 | samd11-216 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -50845 | enst00000622503 | sg00000187634 | samd11-217 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -50845 | enst00000618181 | sg00000187634 | samd11-213 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -50845 | enst00000617307 | sg00000187634 | samd11-212 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -50855 | enst00000342066 | sg00000187634 | samd11-202 | 1 | 925731 | 944574 | + | mRNA | protein_coding |
| -51436 | enst00000437963 | sg00000187634 | samd11-204 | 1 | 925150 | 935793 | + | mRNA | protein_coding |
| -52658 | enst00000420190 | sg00000187634 | samd11-203 | 1 | 923928 | 939291 | + | mRNA | protein_coding |
| 55535 | enst00000652369 | sg00000188157 | agrn-210 | 1 | 1034106 | 1056116 | + | mRNA | protein_coding |
| 55535 | enst00000651234 | sg00000188157 | agrn-209 | 1 | 1034106 | 1056116 | + | mRNA | protein_coding |
| -55570 | enst00000609207 | sg00000223764 | linc02593-203 | 1 | 916865 | 921016 | - | lnc_RNA | retained_intron |
| 56296 | enst00000469403 | sg00000188157 | agrn-204 | 1 | 1034867 | 1041397 | + | lnc_RNA | retained_intron |
| -56894 | enst00000417705 | sg00000223764 | linc02593-201 | 1 | 916870 | 919692 | - | lnc_RNA | lncrna |
| -58052 | enst00000432961 | sg00000223764 | linc02593-202 | 1 | 917370 | 918534 | - | lnc_RNA | retained_intron |
| -62415 | enst00000398216 | sg00000241180 | al645608.4-201 | 1 | 914171 | 914971 | + | lnc_RNA | lncrna |
| -65151 | enst00000448179 | sg00000230699 | al645608.2-201 | 1 | 911435 | 914948 | + | lnc_RNA | lncrna |
| 66828 | enst00000479707 | sg00000188157 | agrn-206 | 1 | 1045399 | 1046349 | + | lnc_RNA | retained_intron |
| 68630 | enst00000466223 | sg00000188157 | agrn-203 | 1 | 1047201 | 1047865 | + | lnc_RNA | retained_intron |
| 68904 | enst00000478677 | sg00000188157 | agrn-205 | 1 | 1047475 | 1047838 | + | lnc_RNA | retained_intron |
| 69958 | enst00000492947 | sg00000188157 | agrn-207 | 1 | 1048529 | 1049394 | + | lnc_RNA | retained_intron |
| -71752 | enst00000607769 | sg00000272438 | al645608.6-201 | 1 | 904834 | 915976 | + | lnc_RNA | lncrna |
| 73415 | enst00000461111 | sg00000188157 | agrn-202 | 1 | 1051986 | 1056112 | + | lnc_RNA | retained_intron |
| 76462 | enst00000418300 | sg00000242590 | al645608.5-201 | 1 | 1055033 | 1056116 | + | lnc_RNA | lncrna |
| 81137 | enst00000394517 | sg00000217801 | al390719.1-201 | 1 | 1059708 | 1066459 | + | lnc_RNA | processed_transcript |
| 81163 | enst00000427998 | sg00000217801 | al390719.1-202 | 1 | 1059734 | 1066456 | + | lnc_RNA | processed_transcript |
| 84508 | enst00000456409 | sg00000217801 | al390719.1-203 | 1 | 1063079 | 1066456 | + | lnc_RNA | processed_transcript |
| 84508 | enst00000412397 | sg00000217801 | al390719.1-204 | 1 | 1063079 | 1069355 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 84717 | enst00000442292 | sg00000273443 | al645608.8-201 | 1 | 1062208 | 1063288 | - | lnc_RNA | lncrna |
| 85924 | enst00000433695 | sg00000217801 | al390719.1-205 | 1 | 1064495 | 1066274 | + | lnc_RNA | processed_transcript |
| 85947 | enst00000451054 | sg00000217801 | al390719.1-206 | 1 | 1064518 | 1066441 | + | lnc_RNA | processed_transcript |
| 95735 | enst00000453464 | sg00000237330 | rnf223-201 | 1 | 1070967 | 1074306 | - | mRNA | protein_coding |
| -99352 | enst00000635557 | sg00000283040 | al669831.5-201 | 1 | 874529 | 877234 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -99683 | enst00000446136 | sg00000230368 | fam41c-203 | 1 | 868071 | 876903 | - | lnc_RNA | lncrna |
| -99784 | enst00000427857 | sg00000230368 | fam41c-201 | 1 | 868403 | 876802 | - | lnc_RNA | lncrna |
| -103294 | enst00000415481 | sg00000234711 | tubb8p11-201 | 1 | 873292 | 874349 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 105501 | enst00000464905 | sg00000131591 | c1orf159-210 | 1 | 1082146 | 1084072 | - | lnc_RNA | processed_transcript |
| -106385 | enst00000432963 | sg00000230368 | fam41c-202 | 1 | 868240 | 870201 | - | lnc_RNA | lncrna |
| 109065 | enst00000487177 | sg00000131591 | c1orf159-219 | 1 | 1081825 | 1087636 | - | lnc_RNA | retained_intron |
| 113506 | enst00000465822 | sg00000131591 | c1orf159-211 | 1 | 1081823 | 1092077 | - | lnc_RNA | retained_intron |
| 113603 | enst00000379320 | sg00000131591 | c1orf159-202 | 1 | 1082235 | 1092174 | - | mRNA | protein_coding |
| 113723 | enst00000473600 | sg00000131591 | c1orf159-214 | 1 | 1087141 | 1092294 | - | lnc_RNA | retained_intron |
| 114242 | enst00000427787 | sg00000131591 | c1orf159-206 | 1 | 1090406 | 1092813 | - | mRNA | protein_coding |
| 114242 | enst00000442117 | sg00000131591 | c1orf159-208 | 1 | 1087575 | 1092813 | - | mRNA | protein_coding |
| -116359 | enst00000661463 | sg00000288531 | al669831.7-202 | 1 | 860227 | 868202 | + | lnc_RNA | lncrna |
| -116360 | enst00000671208 | sg00000288531 | al669831.7-201 | 1 | 860226 | 866720 | + | lnc_RNA | lncrna |
| 119014 | enst00000648183 | sg00000285812 | al390719.3-201 | 1 | 1097585 | 1104598 | + | lnc_RNA | lncrna |
| -125238 | enst00000425657 | sg00000228794 | linc01128-203 | 1 | 851348 | 852752 | + | lnc_RNA | retained_intron |
| 127556 | enst00000379319 | sg00000131591 | c1orf159-201 | 1 | 1082700 | 1106127 | - | mRNA | protein_coding |
| 137510 | enst00000379339 | sg00000131591 | c1orf159-204 | 1 | 1081818 | 1116081 | - | mRNA | protein_coding |
| 137516 | enst00000472741 | sg00000131591 | c1orf159-213 | 1 | 1091046 | 1116087 | - | lnc_RNA | retained_intron |
| 137518 | enst00000467751 | sg00000131591 | c1orf159-212 | 1 | 1081825 | 1116089 | - | mRNA | nonsense_mediated_decay |
| 137518 | enst00000477196 | sg00000131591 | c1orf159-216 | 1 | 1081825 | 1116089 | - | mRNA | nonsense_mediated_decay |
| 137518 | enst00000480643 | sg00000131591 | c1orf159-217 | 1 | 1091500 | 1116089 | - | mRNA | protein_coding |
| 137524 | enst00000434641 | sg00000131591 | c1orf159-207 | 1 | 1082916 | 1116095 | - | mRNA | protein_coding |
| 137524 | enst00000379325 | sg00000131591 | c1orf159-203 | 1 | 1081823 | 1116095 | - | mRNA | nonsense_mediated_decay |
| 137527 | enst00000421241 | sg00000131591 | c1orf159-205 | 1 | 1081823 | 1116098 | - | mRNA | protein_coding |
| 137672 | enst00000482816 | sg00000131591 | c1orf159-218 | 1 | 1083926 | 1116243 | - | lnc_RNA | processed_transcript |
| 137785 | enst00000462097 | sg00000131591 | c1orf159-209 | 1 | 1087139 | 1116356 | - | mRNA | protein_coding |
| 137790 | enst00000475119 | sg00000131591 | c1orf159-215 | 1 | 1087190 | 1116361 | - | mRNA | protein_coding |
| -144981 | enst00000415295 | sg00000228794 | linc01128-201 | 1 | 831605 | 842020 | + | lnc_RNA | lncrna |
| -145008 | enst00000670824 | sg00000228794 | linc01128-227 | 1 | 831578 | 843594 | + | lnc_RNA | lncrna |
| -148765 | enst00000622921 | sg00000228794 | linc01128-212 | 1 | 827821 | 852515 | + | lnc_RNA | lncrna |
| -148771 | enst00000660797 | sg00000228794 | linc01128-220 | 1 | 827815 | 841999 | + | lnc_RNA | lncrna |
| -148780 | enst00000657175 | sg00000228794 | linc01128-216 | 1 | 827806 | 854385 | + | lnc_RNA | lncrna |
| -148790 | enst00000634337 | sg00000230021 | al669831.3-208 | 1 | 594308 | 827796 | - | lnc_RNA | processed_transcript |
| -148815 | enst00000668541 | sg00000228794 | linc01128-224 | 1 | 827771 | 842001 | + | lnc_RNA | lncrna |
| -148817 | enst00000635509 | sg00000230021 | al669831.3-207 | 1 | 594308 | 827769 | - | lnc_RNA | processed_transcript |
| -148886 | enst00000661237 | sg00000228794 | linc01128-221 | 1 | 827700 | 854376 | + | lnc_RNA | lncrna |
| -148887 | enst00000416570 | sg00000228794 | linc01128-202 | 1 | 827699 | 852766 | + | lnc_RNA | lncrna |
| -148894 | enst00000610067 | sg00000228794 | linc01128-211 | 1 | 827692 | 850213 | + | lnc_RNA | lncrna |
| -148913 | enst00000657837 | sg00000228794 | linc01128-217 | 1 | 827673 | 857246 | + | lnc_RNA | lncrna |
| -148919 | enst00000441765 | sg00000228794 | linc01128-204 | 1 | 827667 | 842001 | + | lnc_RNA | lncrna |
| -148919 | enst00000609139 | sg00000228794 | linc01128-210 | 1 | 827667 | 853452 | + | lnc_RNA | lncrna |
| -148919 | enst00000609009 | sg00000228794 | linc01128-209 | 1 | 827667 | 854385 | + | lnc_RNA | lncrna |
| -148923 | enst00000449005 | sg00000228794 | linc01128-207 | 1 | 827663 | 853497 | + | lnc_RNA | lncrna |
| -148929 | enst00000448975 | sg00000228794 | linc01128-206 | 1 | 827657 | 852014 | + | lnc_RNA | lncrna |
| -148932 | enst00000658846 | sg00000228794 | linc01128-218 | 1 | 827654 | 853602 | + | lnc_RNA | lncrna |
| -148932 | enst00000608189 | sg00000228794 | linc01128-208 | 1 | 827654 | 854096 | + | lnc_RNA | lncrna |
| -148934 | enst00000659124 | sg00000228794 | linc01128-219 | 1 | 827652 | 859332 | + | lnc_RNA | lncrna |
| -148934 | enst00000623070 | sg00000228794 | linc01128-213 | 1 | 827652 | 853522 | + | lnc_RNA | lncrna |
| -148948 | enst00000666741 | sg00000228794 | linc01128-222 | 1 | 827638 | 859408 | + | lnc_RNA | lncrna |
| -148951 | enst00000667414 | sg00000228794 | linc01128-223 | 1 | 827635 | 849162 | + | lnc_RNA | lncrna |
| -148982 | enst00000670780 | sg00000228794 | linc01128-226 | 1 | 827604 | 859085 | + | lnc_RNA | lncrna |
| -148983 | enst00000669922 | sg00000228794 | linc01128-225 | 1 | 827603 | 846365 | + | lnc_RNA | lncrna |
| -148988 | enst00000445118 | sg00000228794 | linc01128-205 | 1 | 827598 | 859446 | + | lnc_RNA | lncrna |
| -149064 | enst00000473798 | sg00000225880 | linc00115-201 | 1 | 826206 | 827522 | - | lnc_RNA | lncrna |
| -149754 | enst00000623808 | sg00000228794 | linc01128-214 | 1 | 826832 | 852225 | + | lnc_RNA | lncrna |
| -151448 | enst00000624927 | sg00000228794 | linc01128-215 | 1 | 825138 | 849592 | + | lnc_RNA | lncrna |
| 158446 | enst00000416774 | sg00000223823 | linc01342-201 | 1 | 1137017 | 1144056 | + | lnc_RNA | lncrna |
| -158874 | enst00000447500 | sg00000230092 | al669831.4-201 | 1 | 800879 | 817712 | - | lnc_RNA | processed_transcript |
| -159215 | enst00000326734 | sg00000177757 | fam87b-201 | 1 | 817371 | 819837 | + | lnc_RNA | lncrna |
| -166425 | enst00000590817 | sg00000230092 | al669831.4-202 | 1 | 805799 | 810161 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -172652 | enst00000667728 | sg00000237491 | linc01409-230 | 1 | 803934 | 807435 | + | lnc_RNA | lncrna |
| -172750 | enst00000655384 | sg00000237491 | linc01409-222 | 1 | 803836 | 806580 | + | lnc_RNA | lncrna |
| 188533 | enst00000384997 | sg00000207730 | mir200b-201 | 1 | 1167104 | 1167198 | + | miRNA | mirna |
| 189292 | enst00000384875 | sg00000207607 | mir200a-201 | 1 | 1167863 | 1167952 | + | miRNA | mirna |
| 190434 | enst00000362106 | sg00000198976 | mir429-201 | 1 | 1169005 | 1169087 | + | miRNA | mirna |
| 190786 | enst00000606993 | sg00000272141 | al390719.2-201 | 1 | 1169357 | 1170343 | + | lnc_RNA | lncrna |
| -190786 | enst00000591702 | sg00000237491 | linc01409-217 | 1 | 785800 | 787672 | + | lnc_RNA | lncrna |
| -192190 | enst00000586288 | sg00000237491 | linc01409-209 | 1 | 784396 | 807321 | + | lnc_RNA | lncrna |
| -192216 | enst00000593022 | sg00000237491 | linc01409-219 | 1 | 784370 | 806459 | + | lnc_RNA | lncrna |
| -192216 | enst00000589531 | sg00000237491 | linc01409-213 | 1 | 784370 | 807314 | + | lnc_RNA | lncrna |
| -192216 | enst00000585826 | sg00000237491 | linc01409-208 | 1 | 784370 | 784759 | + | lnc_RNA | lncrna |
| -192216 | enst00000592547 | sg00000237491 | linc01409-218 | 1 | 784370 | 784977 | + | lnc_RNA | lncrna |
| -192216 | enst00000586928 | sg00000237491 | linc01409-210 | 1 | 784370 | 786866 | + | lnc_RNA | lncrna |
| -192216 | enst00000588951 | sg00000237491 | linc01409-212 | 1 | 784370 | 809729 | + | lnc_RNA | lncrna |
| -192216 | enst00000585768 | sg00000237491 | linc01409-207 | 1 | 784370 | 801876 | + | lnc_RNA | lncrna |
| -192216 | enst00000590848 | sg00000237491 | linc01409-215 | 1 | 784370 | 804832 | + | lnc_RNA | lncrna |
| -192216 | enst00000591440 | sg00000237491 | linc01409-216 | 1 | 784370 | 805127 | + | lnc_RNA | lncrna |
| -192216 | enst00000587530 | sg00000237491 | linc01409-211 | 1 | 784370 | 805270 | + | lnc_RNA | lncrna |
| -192216 | enst00000585745 | sg00000237491 | linc01409-206 | 1 | 784370 | 795513 | + | lnc_RNA | lncrna |
| -194649 | enst00000644482 | sg00000285268 | al669831.6-201 | 1 | 781937 | 782050 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 195309 | enst00000379290 | sg00000162571 | ttll10-203 | 1 | 1173880 | 1197936 | + | mRNA | protein_coding |
| 195309 | enst00000379289 | sg00000162571 | ttll10-202 | 1 | 1173880 | 1197936 | + | mRNA | protein_coding |
| 195313 | enst00000506177 | sg00000162571 | ttll10-206 | 1 | 1173884 | 1175034 | + | lnc_RNA | processed_transcript |
| 195327 | enst00000673999 | sg00000162571 | ttll10-208 | 1 | 1173898 | 1180174 | + | mRNA | protein_coding |
| -197614 | enst00000443772 | sg00000237491 | linc01409-204 | 1 | 778972 | 808378 | + | lnc_RNA | lncrna |
| -197649 | enst00000609830 | sg00000237491 | linc01409-220 | 1 | 778937 | 784429 | + | lnc_RNA | lncrna |
| -197656 | enst00000589899 | sg00000237491 | linc01409-214 | 1 | 778930 | 784655 | + | lnc_RNA | lncrna |
| -197737 | enst00000651411 | sg00000237491 | linc01409-221 | 1 | 778849 | 805272 | + | lnc_RNA | lncrna |
| -197774 | enst00000666217 | sg00000237491 | linc01409-229 | 1 | 778812 | 810057 | + | lnc_RNA | lncrna |
| -197774 | enst00000665719 | sg00000237491 | linc01409-227 | 1 | 778812 | 810065 | + | lnc_RNA | lncrna |
| -197777 | enst00000665867 | sg00000237491 | linc01409-228 | 1 | 778809 | 787186 | + | lnc_RNA | lncrna |
| -197777 | enst00000669749 | sg00000237491 | linc01409-231 | 1 | 778809 | 810047 | + | lnc_RNA | lncrna |
| -197784 | enst00000656571 | sg00000237491 | linc01409-224 | 1 | 778802 | 810057 | + | lnc_RNA | lncrna |
| -197790 | enst00000658648 | sg00000237491 | linc01409-226 | 1 | 778796 | 810062 | + | lnc_RNA | lncrna |
| -197804 | enst00000457084 | sg00000237491 | linc01409-205 | 1 | 778782 | 782191 | + | lnc_RNA | lncrna |
| -197816 | enst00000434264 | sg00000237491 | linc01409-203 | 1 | 778770 | 784690 | + | lnc_RNA | lncrna |
| -197826 | enst00000657896 | sg00000237491 | linc01409-225 | 1 | 778760 | 810062 | + | lnc_RNA | lncrna |
| -197826 | enst00000429505 | sg00000237491 | linc01409-202 | 1 | 778760 | 805270 | + | lnc_RNA | lncrna |
| -197828 | enst00000670700 | sg00000237491 | linc01409-232 | 1 | 778758 | 810062 | + | lnc_RNA | lncrna |
| -197839 | enst00000655765 | sg00000237491 | linc01409-223 | 1 | 778747 | 805994 | + | lnc_RNA | lncrna |
| -197839 | enst00000412115 | sg00000237491 | linc01409-201 | 1 | 778747 | 810063 | + | lnc_RNA | lncrna |
| -197960 | enst00000506640 | sg00000228327 | al669831.1-201 | 1 | 725885 | 778626 | - | lnc_RNA | processed_transcript |
| 200984 | enst00000379317 | sg00000205231 | ttll10-as1-201 | 1 | 1173056 | 1179555 | - | lnc_RNA | lncrna |
| 201126 | enst00000379288 | sg00000162571 | ttll10-201 | 1 | 1179697 | 1185864 | + | mRNA | protein_coding |
| 201913 | enst00000460998 | sg00000162571 | ttll10-204 | 1 | 1180484 | 1183927 | + | lnc_RNA | retained_intron |
| 201966 | enst00000514695 | sg00000162571 | ttll10-207 | 1 | 1180537 | 1180884 | + | lnc_RNA | retained_intron |
| -202306 | enst00000428504 | sg00000228327 | al669831.1-202 | 1 | 764723 | 774280 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 206465 | enst00000486379 | sg00000162571 | ttll10-205 | 1 | 1185036 | 1197475 | + | mRNA | nonsense_mediated_decay |
| -215675 | enst00000422528 | sg00000229905 | al669831.2-201 | 1 | 760911 | 761989 | + | lnc_RNA | lncrna |
| -218250 | enst00000411249 | sg00000223181 | rnu6-1199p-201 | 1 | 758233 | 758336 | - | snRNA | snrna |
| 227109 | enst00000486728 | sg00000186891 | tnfrsf18-204 | 1 | 1203844 | 1205680 | - | mRNA | protein_coding |
| 228000 | enst00000328596 | sg00000186891 | tnfrsf18-201 | 1 | 1203508 | 1206571 | - | mRNA | protein_coding |
| 228000 | enst00000379265 | sg00000186891 | tnfrsf18-202 | 1 | 1203844 | 1206571 | - | mRNA | protein_coding |
| 228021 | enst00000379268 | sg00000186891 | tnfrsf18-203 | 1 | 1203508 | 1206592 | - | mRNA | protein_coding |
| 234927 | enst00000453580 | sg00000186827 | tnfrsf4-202 | 1 | 1212019 | 1213498 | - | lnc_RNA | processed_transcript |
| 235567 | enst00000497869 | sg00000186827 | tnfrsf4-203 | 1 | 1211340 | 1214138 | - | lnc_RNA | retained_intron |
| 235582 | enst00000379236 | sg00000186827 | tnfrsf4-201 | 1 | 1211340 | 1214153 | - | mRNA | protein_coding |
| 241722 | enst00000478938 | sg00000078808 | sdf4-206 | 1 | 1216934 | 1220293 | - | lnc_RNA | retained_intron |
| 242780 | enst00000494748 | sg00000078808 | sdf4-207 | 1 | 1216932 | 1221351 | - | lnc_RNA | retained_intron |
| -243522 | enst00000648019 | sg00000230021 | al669831.3-209 | 1 | 594458 | 733064 | - | lnc_RNA | processed_transcript |
| -244374 | enst00000414688 | sg00000230021 | al669831.3-213 | 1 | 711867 | 732212 | - | lnc_RNA | processed_transcript |
| 250025 | enst00000403997 | sg00000078808 | sdf4-203 | 1 | 1218523 | 1228596 | - | mRNA | protein_coding |
| 250222 | enst00000655486 | sg00000078808 | sdf4-208 | 1 | 1217512 | 1228793 | - | mRNA | protein_coding |
| -252022 | enst00000447954 | sg00000230021 | al669831.3-215 | 1 | 720053 | 724564 | - | lnc_RNA | processed_transcript |
| 253397 | enst00000459994 | sg00000078808 | sdf4-204 | 1 | 1227272 | 1231968 | - | lnc_RNA | processed_transcript |
| 253430 | enst00000360001 | sg00000078808 | sdf4-202 | 1 | 1216908 | 1232001 | - | mRNA | protein_coding |
| 253460 | enst00000465727 | sg00000078808 | sdf4-205 | 1 | 1216931 | 1232031 | - | mRNA | nonsense_mediated_decay |
| 253460 | enst00000263741 | sg00000078808 | sdf4-201 | 1 | 1216931 | 1232031 | - | mRNA | protein_coding |
| 253496 | enst00000660930 | sg00000078808 | sdf4-209 | 1 | 1216909 | 1232067 | - | mRNA | protein_coding |
| 253666 | enst00000379198 | sg00000176022 | b3galt6-201 | 1 | 1232237 | 1235041 | + | mRNA | protein_coding |
| -254494 | enst00000440782 | sg00000229376 | cicp3-201 | 1 | 722092 | 724903 | + | pseudogenic_transcript | processed_pseudogene |
| -256380 | enst00000636676 | sg00000230021 | al669831.3-214 | 1 | 720024 | 720206 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| -256386 | enst00000440200 | sg00000230021 | al669831.3-210 | 1 | 601436 | 720200 | - | lnc_RNA | processed_transcript |
| -256392 | enst00000419394 | sg00000230021 | al669831.3-203 | 1 | 586945 | 720194 | - | lnc_RNA | processed_transcript |
| -256436 | enst00000441245 | sg00000230021 | al669831.3-212 | 1 | 701936 | 720150 | - | lnc_RNA | processed_transcript |
| 264587 | enst00000478606 | sg00000184163 | c1qtnf12-204 | 1 | 1242449 | 1243158 | - | lnc_RNA | retained_intron |
| 264892 | enst00000462849 | sg00000184163 | c1qtnf12-202 | 1 | 1242446 | 1243463 | - | lnc_RNA | retained_intron |
| 265847 | enst00000468365 | sg00000184163 | c1qtnf12-203 | 1 | 1243266 | 1244418 | - | lnc_RNA | retained_intron |
| 266153 | enst00000486627 | sg00000184163 | c1qtnf12-205 | 1 | 1243981 | 1244724 | - | lnc_RNA | retained_intron |
| 268151 | enst00000330388 | sg00000184163 | c1qtnf12-201 | 1 | 1242453 | 1246722 | - | mRNA | protein_coding |
| 272763 | enst00000565563 | sg00000260179 | al162741.1-201 | 1 | 1249777 | 1251334 | - | lnc_RNA | lncrna |
| 277764 | enst00000467339 | sg00000160087 | ube2j2-212 | 1 | 1255264 | 1256335 | - | lnc_RNA | processed_transcript |
| 284998 | enst00000471154 | sg00000160087 | ube2j2-213 | 1 | 1257122 | 1263569 | - | lnc_RNA | retained_intron |
| -289913 | enst00000332831 | sg00000284662 | or4f16-201 | 1 | 685679 | 686673 | - | mRNA | protein_coding |
| 294900 | enst00000488418 | sg00000160087 | ube2j2-216 | 1 | 1267862 | 1273471 | - | mRNA | protein_coding |
| 295155 | enst00000360466 | sg00000160087 | ube2j2-203 | 1 | 1255164 | 1273726 | - | mRNA | protein_coding |
| 295219 | enst00000491779 | sg00000160087 | ube2j2-217 | 1 | 1256049 | 1273790 | - | lnc_RNA | processed_transcript |
| 295244 | enst00000466752 | sg00000160087 | ube2j2-211 | 1 | 1256992 | 1273815 | - | mRNA | nonsense_mediated_decay |
| 295256 | enst00000509720 | sg00000160087 | ube2j2-220 | 1 | 1255439 | 1273827 | - | mRNA | protein_coding |
| 295262 | enst00000503294 | sg00000160087 | ube2j2-219 | 1 | 1257011 | 1273833 | - | mRNA | nonsense_mediated_decay |
| 295262 | enst00000400930 | sg00000160087 | ube2j2-205 | 1 | 1255178 | 1273833 | - | mRNA | protein_coding |
| 295266 | enst00000461142 | sg00000160087 | ube2j2-209 | 1 | 1262853 | 1273837 | - | lnc_RNA | retained_intron |
| 295266 | enst00000422076 | sg00000160087 | ube2j2-206 | 1 | 1257227 | 1273837 | - | mRNA | protein_coding |
| 295273 | enst00000435198 | sg00000160087 | ube2j2-207 | 1 | 1255395 | 1273844 | - | mRNA | protein_coding |
| 295278 | enst00000473215 | sg00000160087 | ube2j2-214 | 1 | 1255268 | 1273849 | - | mRNA | nonsense_mediated_decay |
| 295282 | enst00000450390 | sg00000160087 | ube2j2-208 | 1 | 1253909 | 1273853 | - | mRNA | nonsense_mediated_decay |
| 295283 | enst00000502382 | sg00000160087 | ube2j2-218 | 1 | 1257270 | 1273854 | - | mRNA | protein_coding |
| 295283 | enst00000477894 | sg00000160087 | ube2j2-215 | 1 | 1257049 | 1273854 | - | mRNA | nonsense_mediated_decay |
| 295283 | enst00000347370 | sg00000160087 | ube2j2-201 | 1 | 1253914 | 1273854 | - | mRNA | protein_coding |
| 295284 | enst00000400929 | sg00000160087 | ube2j2-204 | 1 | 1254985 | 1273855 | - | mRNA | protein_coding |
| 295293 | enst00000464036 | sg00000160087 | ube2j2-210 | 1 | 1255048 | 1273864 | - | mRNA | nonsense_mediated_decay |
| 295314 | enst00000349431 | sg00000160087 | ube2j2-202 | 1 | 1254470 | 1273885 | - | mRNA | protein_coding |
| 296652 | enst00000434139 | sg00000230415 | linc01786-201 | 1 | 1275223 | 1280420 | + | lnc_RNA | lncrna |
| 296666 | enst00000453732 | sg00000230415 | linc01786-202 | 1 | 1275237 | 1279393 | + | lnc_RNA | lncrna |
| -301744 | enst00000438434 | sg00000268663 | wbp1lp6-201 | 1 | 674842 | 675265 | + | pseudogenic_transcript | processed_pseudogene |
| 301865 | enst00000379116 | sg00000162572 | scnn1d-205 | 1 | 1280436 | 1292025 | + | mRNA | protein_coding |
| 301901 | enst00000379101 | sg00000162572 | scnn1d-204 | 1 | 1280472 | 1291373 | + | mRNA | nonsense_mediated_decay |
| 302017 | enst00000338555 | sg00000162572 | scnn1d-202 | 1 | 1280588 | 1292024 | + | mRNA | protein_coding |
| 302653 | enst00000400928 | sg00000162572 | scnn1d-206 | 1 | 1281224 | 1292029 | + | mRNA | protein_coding |
| 303354 | enst00000470022 | sg00000162572 | scnn1d-208 | 1 | 1281925 | 1286168 | + | mRNA | protein_coding |
| 303538 | enst00000325425 | sg00000162572 | scnn1d-201 | 1 | 1282109 | 1292024 | + | mRNA | protein_coding |
| 303593 | enst00000467651 | sg00000162572 | scnn1d-207 | 1 | 1282164 | 1285597 | + | lnc_RNA | processed_transcript |
| 308538 | enst00000379099 | sg00000162572 | scnn1d-203 | 1 | 1287109 | 1290943 | + | mRNA | protein_coding |
| 316437 | enst00000470659 | sg00000131584 | acap3-207 | 1 | 1294499 | 1295008 | - | lnc_RNA | retained_intron |
| 317599 | enst00000613751 | sg00000278073 | mir6726-201 | 1 | 1296110 | 1296170 | - | miRNA | mirna |
| 319670 | enst00000493992 | sg00000131584 | acap3-213 | 1 | 1297837 | 1298241 | - | lnc_RNA | retained_intron |
| 319694 | enst00000379037 | sg00000131584 | acap3-204 | 1 | 1296436 | 1298265 | - | lnc_RNA | processed_transcript |
| 320384 | enst00000467278 | sg00000131584 | acap3-206 | 1 | 1292870 | 1298955 | - | lnc_RNA | retained_intron |
| 321046 | enst00000476572 | sg00000131584 | acap3-209 | 1 | 1296466 | 1299617 | - | lnc_RNA | retained_intron |
| 324689 | enst00000353662 | sg00000131584 | acap3-201 | 1 | 1293564 | 1303260 | - | mRNA | protein_coding |
| 326330 | enst00000478065 | sg00000131584 | acap3-210 | 1 | 1301448 | 1304901 | - | lnc_RNA | retained_intron |
| 327358 | enst00000492936 | sg00000131584 | acap3-212 | 1 | 1292390 | 1305929 | - | lnc_RNA | retained_intron |
| 329247 | enst00000438966 | sg00000131584 | acap3-205 | 1 | 1303210 | 1307818 | - | lnc_RNA | processed_transcript |
| 329250 | enst00000354980 | sg00000131584 | acap3-203 | 1 | 1300196 | 1307821 | - | mRNA | nonsense_mediated_decay |
| 329259 | enst00000479108 | sg00000131584 | acap3-211 | 1 | 1301856 | 1307830 | - | lnc_RNA | retained_intron |
| 329359 | enst00000354700 | sg00000131584 | acap3-202 | 1 | 1292391 | 1307930 | - | mRNA | protein_coding |
| 330026 | enst00000379031 | sg00000169972 | pusl1-201 | 1 | 1308597 | 1311677 | + | mRNA | protein_coding |
| 330040 | enst00000470520 | sg00000169972 | pusl1-204 | 1 | 1308611 | 1311028 | + | lnc_RNA | processed_transcript |
| 330217 | enst00000463758 | sg00000169972 | pusl1-202 | 1 | 1308788 | 1309840 | + | lnc_RNA | retained_intron |
| 330250 | enst00000467712 | sg00000169972 | pusl1-203 | 1 | 1308821 | 1311069 | + | mRNA | protein_coding |
| 330664 | enst00000493657 | sg00000169972 | pusl1-205 | 1 | 1309235 | 1311676 | + | lnc_RNA | retained_intron |
| 331038 | enst00000472541 | sg00000131584 | acap3-208 | 1 | 1298744 | 1309609 | - | lnc_RNA | retained_intron |
| 333995 | enst00000620702 | sg00000283712 | mir6727-201 | 1 | 1312502 | 1312566 | - | miRNA | mirna |
| 334129 | enst00000497304 | sg00000127054 | ints11-222 | 1 | 1311598 | 1312700 | - | lnc_RNA | retained_intron |
| 335179 | enst00000525769 | sg00000127054 | ints11-228 | 1 | 1312286 | 1313750 | - | lnc_RNA | retained_intron |
| 335194 | enst00000525164 | sg00000127054 | ints11-225 | 1 | 1312265 | 1313765 | - | lnc_RNA | retained_intron |
| 335209 | enst00000461514 | sg00000127054 | ints11-211 | 1 | 1312260 | 1313780 | - | lnc_RNA | retained_intron |
| 335254 | enst00000485710 | sg00000127054 | ints11-217 | 1 | 1312080 | 1313825 | - | lnc_RNA | retained_intron |
| 336093 | enst00000531292 | sg00000127054 | ints11-241 | 1 | 1313059 | 1314664 | - | lnc_RNA | retained_intron |
| 336570 | enst00000531020 | sg00000127054 | ints11-240 | 1 | 1314136 | 1315141 | - | lnc_RNA | retained_intron |
| 336599 | enst00000478641 | sg00000127054 | ints11-216 | 1 | 1311606 | 1315170 | - | lnc_RNA | retained_intron |
| 336862 | enst00000470030 | sg00000127054 | ints11-214 | 1 | 1311585 | 1315433 | - | lnc_RNA | retained_intron |
| 337030 | enst00000467408 | sg00000127054 | ints11-213 | 1 | 1313546 | 1315601 | - | lnc_RNA | retained_intron |
| 337037 | enst00000527383 | sg00000127054 | ints11-234 | 1 | 1312939 | 1315608 | - | mRNA | nonsense_mediated_decay |
| 337126 | enst00000533916 | sg00000127054 | ints11-245 | 1 | 1314313 | 1315697 | - | lnc_RNA | retained_intron |
| 338879 | enst00000462432 | sg00000127054 | ints11-212 | 1 | 1311602 | 1317450 | - | lnc_RNA | processed_transcript |
| 340118 | enst00000444968 | sg00000240731 | al139287.1-201 | 1 | 1317581 | 1318689 | - | lnc_RNA | lncrna |
| 340775 | enst00000531377 | sg00000127054 | ints11-242 | 1 | 1312787 | 1319346 | - | mRNA | nonsense_mediated_decay |
| -342210 | enst00000416718 | sg00000198744 | mtco3p12-201 | 1 | 634376 | 634922 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 342334 | enst00000525603 | sg00000127054 | ints11-227 | 1 | 1315560 | 1320905 | - | lnc_RNA | retained_intron |
| -342890 | enst00000514057 | sg00000248527 | mtatp6p1-201 | 1 | 633696 | 634376 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -343051 | enst00000467115 | sg00000240409 | mtatp8p1-201 | 1 | 633535 | 633741 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -343457 | enst00000440196 | sg00000230021 | al669831.3-204 | 1 | 594191 | 633129 | - | lnc_RNA | processed_transcript |
| -343829 | enst00000427426 | sg00000229344 | mtco2p12-201 | 1 | 632757 | 633438 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -344173 | enst00000621981 | sg00000278791 | ac114498.2-201 | 1 | 632325 | 632413 | - | miRNA | mirna |
| -345382 | enst00000641296 | sg00000230021 | al669831.3-205 | 1 | 594198 | 631204 | - | lnc_RNA | processed_transcript |
| -345436 | enst00000452176 | sg00000230021 | al669831.3-211 | 1 | 627377 | 631150 | - | lnc_RNA | processed_transcript |
| -345512 | enst00000414273 | sg00000237973 | mtco1p12-201 | 1 | 631074 | 632616 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 346032 | enst00000470679 | sg00000127054 | ints11-215 | 1 | 1319470 | 1324603 | - | mRNA | nonsense_mediated_decay |
| 346040 | enst00000496353 | sg00000127054 | ints11-221 | 1 | 1318697 | 1324611 | - | lnc_RNA | retained_intron |
| 346042 | enst00000525285 | sg00000127054 | ints11-226 | 1 | 1320478 | 1324613 | - | mRNA | nonsense_mediated_decay |
| 346050 | enst00000323275 | sg00000127054 | ints11-201 | 1 | 1311600 | 1324621 | - | lnc_RNA | retained_intron |
| 346054 | enst00000430786 | sg00000127054 | ints11-206 | 1 | 1314878 | 1324625 | - | mRNA | nonsense_mediated_decay |
| 346057 | enst00000532772 | sg00000127054 | ints11-243 | 1 | 1311627 | 1324628 | - | mRNA | nonsense_mediated_decay |
| 346058 | enst00000488042 | sg00000127054 | ints11-218 | 1 | 1314413 | 1324629 | - | lnc_RNA | retained_intron |
| 346059 | enst00000434694 | sg00000127054 | ints11-207 | 1 | 1313745 | 1324630 | - | mRNA | protein_coding |
| 346066 | enst00000421495 | sg00000127054 | ints11-204 | 1 | 1311606 | 1324637 | - | mRNA | protein_coding |
| 346066 | enst00000526113 | sg00000127054 | ints11-229 | 1 | 1315004 | 1324637 | - | lnc_RNA | retained_intron |
| 346071 | enst00000532952 | sg00000127054 | ints11-244 | 1 | 1319347 | 1324642 | - | lnc_RNA | processed_transcript |
| 346077 | enst00000528879 | sg00000127054 | ints11-236 | 1 | 1312284 | 1324648 | - | mRNA | nonsense_mediated_decay |
| 346078 | enst00000490853 | sg00000127054 | ints11-219 | 1 | 1319381 | 1324649 | - | lnc_RNA | processed_transcript |
| 346079 | enst00000458452 | sg00000127054 | ints11-210 | 1 | 1311606 | 1324650 | - | mRNA | nonsense_mediated_decay |
| 346082 | enst00000419704 | sg00000127054 | ints11-203 | 1 | 1311606 | 1324653 | - | mRNA | protein_coding |
| 346087 | enst00000530233 | sg00000127054 | ints11-238 | 1 | 1322771 | 1324658 | - | lnc_RNA | retained_intron |
| 346087 | enst00000526904 | sg00000127054 | ints11-232 | 1 | 1315146 | 1324658 | - | lnc_RNA | retained_intron |
| 346087 | enst00000526797 | sg00000127054 | ints11-231 | 1 | 1314826 | 1324658 | - | mRNA | nonsense_mediated_decay |
| 346087 | enst00000493534 | sg00000127054 | ints11-220 | 1 | 1319060 | 1324658 | - | lnc_RNA | processed_transcript |
| 346088 | enst00000530031 | sg00000127054 | ints11-237 | 1 | 1314918 | 1324659 | - | mRNA | protein_coding |
| 346089 | enst00000531019 | sg00000127054 | ints11-239 | 1 | 1319381 | 1324660 | - | mRNA | nonsense_mediated_decay |
| 346089 | enst00000498476 | sg00000127054 | ints11-224 | 1 | 1319403 | 1324660 | - | mRNA | protein_coding |
| 346089 | enst00000526332 | sg00000127054 | ints11-230 | 1 | 1314827 | 1324660 | - | mRNA | protein_coding |
| 346095 | enst00000429572 | sg00000127054 | ints11-205 | 1 | 1318679 | 1324666 | - | mRNA | protein_coding |
| 346095 | enst00000527098 | sg00000127054 | ints11-233 | 1 | 1311823 | 1324666 | - | mRNA | nonsense_mediated_decay |
| 346099 | enst00000450926 | sg00000127054 | ints11-209 | 1 | 1311819 | 1324670 | - | mRNA | protein_coding |
| 346100 | enst00000527719 | sg00000127054 | ints11-235 | 1 | 1314916 | 1324671 | - | mRNA | protein_coding |
| 346100 | enst00000534345 | sg00000127054 | ints11-246 | 1 | 1319306 | 1324671 | - | mRNA | protein_coding |
| 346102 | enst00000411962 | sg00000127054 | ints11-202 | 1 | 1311601 | 1324673 | - | mRNA | protein_coding |
| 346116 | enst00000498173 | sg00000127054 | ints11-223 | 1 | 1318681 | 1324687 | - | lnc_RNA | retained_intron |
| 346116 | enst00000618806 | sg00000127054 | ints11-249 | 1 | 1311585 | 1324687 | - | mRNA | protein_coding |
| 346116 | enst00000620829 | sg00000127054 | ints11-250 | 1 | 1311585 | 1324687 | - | mRNA | protein_coding |
| 346116 | enst00000540437 | sg00000127054 | ints11-247 | 1 | 1311585 | 1324687 | - | mRNA | protein_coding |
| 346116 | enst00000545578 | sg00000127054 | ints11-248 | 1 | 1311585 | 1324687 | - | mRNA | protein_coding |
| 346120 | enst00000435064 | sg00000127054 | ints11-208 | 1 | 1311597 | 1324691 | - | mRNA | protein_coding |
| 346185 | enst00000464957 | sg00000224051 | cptp-202 | 1 | 1324756 | 1327994 | + | lnc_RNA | processed_transcript |
| 346231 | enst00000343938 | sg00000224051 | cptp-201 | 1 | 1324802 | 1328896 | + | mRNA | protein_coding |
| 346670 | enst00000488011 | sg00000224051 | cptp-203 | 1 | 1325241 | 1327471 | + | mRNA | protein_coding |
| -346946 | enst00000457540 | sg00000225630 | mtnd2p28-201 | 1 | 629640 | 630683 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -347524 | enst00000416931 | sg00000225972 | mtnd1p23-201 | 1 | 629062 | 629433 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 352709 | enst00000339381 | sg00000169962 | tas1r3-201 | 1 | 1331280 | 1335314 | + | mRNA | protein_coding |
| 360851 | enst00000632445 | sg00000107404 | dvl1-206 | 1 | 1336412 | 1339422 | - | mRNA | protein_coding |
| 361137 | enst00000616525 | sg00000284372 | mir6808-201 | 1 | 1339650 | 1339708 | - | miRNA | mirna |
| 361481 | enst00000631679 | sg00000107404 | dvl1-205 | 1 | 1337023 | 1340052 | - | mRNA | protein_coding |
| 361619 | enst00000634054 | sg00000107404 | dvl1-208 | 1 | 1338334 | 1340190 | - | lnc_RNA | retained_intron |
| 361794 | enst00000633096 | sg00000107404 | dvl1-207 | 1 | 1339492 | 1340365 | - | lnc_RNA | retained_intron |
| -363773 | enst00000634833 | sg00000230021 | al669831.3-201 | 1 | 586071 | 612813 | - | lnc_RNA | processed_transcript |
| 370384 | enst00000472445 | sg00000107404 | dvl1-203 | 1 | 1341770 | 1348955 | - | lnc_RNA | retained_intron |
| 370541 | enst00000378891 | sg00000107404 | dvl1-202 | 1 | 1335276 | 1349112 | - | mRNA | protein_coding |
| 370564 | enst00000610709 | sg00000107404 | dvl1-204 | 1 | 1335279 | 1349135 | - | mRNA | protein_coding |
| 370847 | enst00000378888 | sg00000107404 | dvl1-201 | 1 | 1335278 | 1349418 | - | mRNA | protein_coding |
| 375676 | enst00000478517 | sg00000162576 | mxra8-210 | 1 | 1353215 | 1354247 | - | lnc_RNA | retained_intron |
| 375693 | enst00000474033 | sg00000162576 | mxra8-207 | 1 | 1352689 | 1354264 | - | lnc_RNA | retained_intron |
| 375903 | enst00000473097 | sg00000162576 | mxra8-206 | 1 | 1353192 | 1354474 | - | lnc_RNA | retained_intron |
| 376445 | enst00000476718 | sg00000162576 | mxra8-208 | 1 | 1353439 | 1355016 | - | lnc_RNA | retained_intron |
| 376941 | enst00000464351 | sg00000162576 | mxra8-205 | 1 | 1355004 | 1355512 | - | lnc_RNA | retained_intron |
| 376941 | enst00000460473 | sg00000162576 | mxra8-204 | 1 | 1355083 | 1355512 | - | lnc_RNA | retained_intron |
| -378035 | enst00000357876 | sg00000230021 | al669831.3-206 | 1 | 594308 | 598551 | - | lnc_RNA | processed_transcript |
| 379964 | enst00000309212 | sg00000162576 | mxra8-201 | 1 | 1352691 | 1358535 | - | mRNA | protein_coding |
| 379972 | enst00000445648 | sg00000162576 | mxra8-203 | 1 | 1352692 | 1358543 | - | mRNA | protein_coding |
| 380223 | enst00000342753 | sg00000162576 | mxra8-202 | 1 | 1352689 | 1358794 | - | mRNA | protein_coding |
| 383206 | enst00000477278 | sg00000162576 | mxra8-209 | 1 | 1352692 | 1361777 | - | mRNA | protein_coding |
| -388133 | enst00000417636 | sg00000230021 | al669831.3-202 | 1 | 586278 | 588453 | - | lnc_RNA | processed_transcript |
| -388918 | enst00000450696 | sg00000235146 | ac114498.1-202 | 1 | 587668 | 594574 | + | lnc_RNA | lncrna |
| -388957 | enst00000423796 | sg00000235146 | ac114498.1-201 | 1 | 587629 | 594768 | + | lnc_RNA | lncrna |
| 396573 | enst00000489799 | sg00000175756 | aurkaip1-205 | 1 | 1374244 | 1375144 | - | lnc_RNA | processed_transcript |
| 396586 | enst00000338370 | sg00000175756 | aurkaip1-203 | 1 | 1373730 | 1375157 | - | mRNA | protein_coding |
| 396588 | enst00000496905 | sg00000175756 | aurkaip1-206 | 1 | 1374438 | 1375159 | - | lnc_RNA | processed_transcript |
| 396598 | enst00000321751 | sg00000175756 | aurkaip1-201 | 1 | 1373732 | 1375169 | - | mRNA | protein_coding |
| 396602 | enst00000378853 | sg00000175756 | aurkaip1-204 | 1 | 1373737 | 1375173 | - | mRNA | protein_coding |
| 396924 | enst00000338338 | sg00000175756 | aurkaip1-202 | 1 | 1373730 | 1375495 | - | mRNA | protein_coding |
| 400095 | enst00000435351 | sg00000223663 | ndufb4p8-201 | 1 | 1378666 | 1379032 | + | pseudogenic_transcript | processed_pseudogene |
| 410142 | enst00000463260 | sg00000221978 | ccnl2-206 | 1 | 1386495 | 1388713 | - | lnc_RNA | retained_intron |
| 412329 | enst00000492998 | sg00000221978 | ccnl2-217 | 1 | 1387543 | 1390900 | - | lnc_RNA | retained_intron |
| 412372 | enst00000408952 | sg00000221978 | ccnl2-203 | 1 | 1386503 | 1390943 | - | mRNA | protein_coding |
| 412433 | enst00000480646 | sg00000221978 | ccnl2-212 | 1 | 1389346 | 1391004 | - | lnc_RNA | retained_intron |
| 412525 | enst00000480479 | sg00000221978 | ccnl2-211 | 1 | 1385711 | 1391096 | - | lnc_RNA | retained_intron |
| 413078 | enst00000505849 | sg00000221978 | ccnl2-220 | 1 | 1387122 | 1391649 | - | lnc_RNA | processed_transcript |
| 413183 | enst00000482365 | sg00000221978 | ccnl2-214 | 1 | 1386502 | 1391754 | - | lnc_RNA | retained_intron |
| 413954 | enst00000418865 | sg00000221978 | ccnl2-204 | 1 | 1386713 | 1392525 | - | lnc_RNA | retained_intron |
| 414145 | enst00000469113 | sg00000221978 | ccnl2-208 | 1 | 1388023 | 1392716 | - | lnc_RNA | processed_transcript |
| 419716 | enst00000473872 | sg00000221978 | ccnl2-210 | 1 | 1393080 | 1398287 | - | lnc_RNA | retained_intron |
| 419716 | enst00000463895 | sg00000221978 | ccnl2-207 | 1 | 1395185 | 1398287 | - | lnc_RNA | retained_intron |
| 419733 | enst00000482621 | sg00000221978 | ccnl2-215 | 1 | 1386482 | 1398304 | - | mRNA | nonsense_mediated_decay |
| 419795 | enst00000471930 | sg00000221978 | ccnl2-209 | 1 | 1391153 | 1398366 | - | lnc_RNA | processed_transcript |
| 420385 | enst00000497013 | sg00000221978 | ccnl2-219 | 1 | 1395437 | 1398956 | - | mRNA | protein_coding |
| 420738 | enst00000496007 | sg00000221978 | ccnl2-218 | 1 | 1386499 | 1399309 | - | lnc_RNA | retained_intron |
| 420740 | enst00000481223 | sg00000221978 | ccnl2-213 | 1 | 1386708 | 1399311 | - | mRNA | nonsense_mediated_decay |
| 420746 | enst00000408918 | sg00000221978 | ccnl2-202 | 1 | 1392288 | 1399317 | - | mRNA | protein_coding |
| 420754 | enst00000425598 | sg00000221978 | ccnl2-205 | 1 | 1393444 | 1399325 | - | mRNA | nonsense_mediated_decay |
| 420757 | enst00000488340 | sg00000221978 | ccnl2-216 | 1 | 1387232 | 1399328 | - | mRNA | nonsense_mediated_decay |
| 420764 | enst00000400809 | sg00000221978 | ccnl2-201 | 1 | 1385711 | 1399335 | - | mRNA | protein_coding |
| 420949 | enst00000659048 | sg00000224870 | mrpl20-as1-209 | 1 | 1399520 | 1402019 | + | lnc_RNA | lncrna |
| 420949 | enst00000448629 | sg00000224870 | mrpl20-as1-204 | 1 | 1399520 | 1402036 | + | lnc_RNA | lncrna |
| 420956 | enst00000444362 | sg00000224870 | mrpl20-as1-202 | 1 | 1399527 | 1402046 | + | lnc_RNA | lncrna |
| 420959 | enst00000418833 | sg00000224870 | mrpl20-as1-201 | 1 | 1399530 | 1402026 | + | lnc_RNA | retained_intron |
| 420981 | enst00000576232 | sg00000224870 | mrpl20-as1-208 | 1 | 1399552 | 1400608 | + | lnc_RNA | lncrna |
| 420991 | enst00000570344 | sg00000224870 | mrpl20-as1-206 | 1 | 1399562 | 1400544 | + | lnc_RNA | lncrna |
| 421001 | enst00000447725 | sg00000224870 | mrpl20-as1-203 | 1 | 1399572 | 1402006 | + | lnc_RNA | lncrna |
| 421235 | enst00000572242 | sg00000224870 | mrpl20-as1-207 | 1 | 1399806 | 1402033 | + | lnc_RNA | retained_intron |
| 421848 | enst00000453521 | sg00000224870 | mrpl20-as1-205 | 1 | 1400419 | 1402046 | + | lnc_RNA | lncrna |
| 427181 | enst00000582431 | sg00000264293 | rn7sl657p-201 | 1 | 1405460 | 1405752 | - | ncRNA | misc_rna |
| 427736 | enst00000493287 | sg00000242485 | mrpl20-206 | 1 | 1401913 | 1406307 | - | lnc_RNA | processed_transcript |
| 428427 | enst00000492508 | sg00000242485 | mrpl20-205 | 1 | 1402182 | 1406998 | - | mRNA | protein_coding |
| 428664 | enst00000477686 | sg00000242485 | mrpl20-202 | 1 | 1406249 | 1407235 | - | lnc_RNA | processed_transcript |
| 428697 | enst00000487659 | sg00000242485 | mrpl20-204 | 1 | 1401913 | 1407268 | - | lnc_RNA | retained_intron |
| 428719 | enst00000482352 | sg00000242485 | mrpl20-203 | 1 | 1405109 | 1407290 | - | mRNA | protein_coding |
| 428722 | enst00000344843 | sg00000242485 | mrpl20-201 | 1 | 1401909 | 1407293 | - | mRNA | protein_coding |
| 430525 | enst00000607307 | sg00000272455 | al391244.2-201 | 1 | 1409096 | 1410618 | + | lnc_RNA | lncrna |
| 441674 | enst00000428932 | sg00000225905 | al391244.1-201 | 1 | 1420245 | 1422691 | + | lnc_RNA | lncrna |
| 442520 | enst00000454272 | sg00000235098 | ankrd65-203 | 1 | 1418880 | 1421091 | - | mRNA | protein_coding |
| 442689 | enst00000442470 | sg00000235098 | ankrd65-202 | 1 | 1419138 | 1421260 | - | mRNA | protein_coding |
| 442873 | enst00000537107 | sg00000235098 | ankrd65-205 | 1 | 1418422 | 1421444 | - | mRNA | protein_coding |
| 442873 | enst00000520296 | sg00000235098 | ankrd65-204 | 1 | 1418420 | 1421444 | - | mRNA | protein_coding |
| 443198 | enst00000427211 | sg00000235098 | ankrd65-201 | 1 | 1418420 | 1421769 | - | mRNA | protein_coding |
| 447557 | enst00000378821 | sg00000205116 | tmem88b-201 | 1 | 1426128 | 1427787 | + | mRNA | protein_coding |
| 453272 | enst00000434150 | sg00000225285 | linc01770-203 | 1 | 1430550 | 1431843 | - | lnc_RNA | lncrna |
| -453658 | enst00000642124 | sg00000237094 | al732372.2-225 | 1 | 504865 | 522928 | - | lnc_RNA | processed_transcript |
| 455917 | enst00000454562 | sg00000225285 | linc01770-204 | 1 | 1430550 | 1434488 | - | lnc_RNA | lncrna |
| 455949 | enst00000417917 | sg00000225285 | linc01770-201 | 1 | 1430664 | 1434520 | - | lnc_RNA | lncrna |
| 456002 | enst00000430109 | sg00000225285 | linc01770-202 | 1 | 1430539 | 1434573 | - | lnc_RNA | lncrna |
| 456290 | enst00000495558 | sg00000179403 | vwa1-204 | 1 | 1434861 | 1437459 | + | mRNA | protein_coding |
| 456952 | enst00000338660 | sg00000179403 | vwa1-201 | 1 | 1435523 | 1440765 | + | mRNA | protein_coding |
| 457119 | enst00000476993 | sg00000179403 | vwa1-203 | 1 | 1435690 | 1442882 | + | mRNA | protein_coding |
| 457164 | enst00000471398 | sg00000179403 | vwa1-202 | 1 | 1435735 | 1437177 | + | mRNA | protein_coding |
| -459334 | enst00000641303 | sg00000237094 | al732372.2-222 | 1 | 501588 | 517252 | - | lnc_RNA | processed_transcript |
| -459361 | enst00000641063 | sg00000237094 | al732372.2-223 | 1 | 501604 | 517225 | - | lnc_RNA | processed_transcript |
| -460107 | enst00000614007 | sg00000278757 | fo681485.1-201 | 1 | 516376 | 516479 | - | snRNA | snrna |
| -462173 | enst00000641049 | sg00000237094 | al732372.2-224 | 1 | 504470 | 514413 | - | lnc_RNA | processed_transcript |
| 471118 | enst00000378785 | sg00000215915 | atad3c-201 | 1 | 1449689 | 1470163 | + | mRNA | protein_coding |
| 471343 | enst00000475091 | sg00000215915 | atad3c-202 | 1 | 1449914 | 1455902 | + | mRNA | protein_coding |
| -473713 | enst00000641916 | sg00000237094 | al732372.2-216 | 1 | 497210 | 502873 | - | lnc_RNA | processed_transcript |
| -473988 | enst00000641579 | sg00000237094 | al732372.2-218 | 1 | 497245 | 502598 | - | lnc_RNA | processed_transcript |
| -473988 | enst00000641845 | sg00000237094 | al732372.2-215 | 1 | 497205 | 502598 | - | lnc_RNA | processed_transcript |
| -474078 | enst00000440038 | sg00000237094 | al732372.2-210 | 1 | 494464 | 502508 | - | lnc_RNA | processed_transcript |
| -474979 | enst00000608420 | sg00000237094 | al732372.2-221 | 1 | 498984 | 501607 | - | lnc_RNA | processed_transcript |
| -477411 | enst00000423728 | sg00000237094 | al732372.2-212 | 1 | 494611 | 499175 | - | lnc_RNA | processed_transcript |
| -477411 | enst00000432964 | sg00000237094 | al732372.2-220 | 1 | 498281 | 499175 | - | lnc_RNA | processed_transcript |
| -477584 | enst00000601486 | sg00000237094 | al732372.2-217 | 1 | 497240 | 499002 | - | lnc_RNA | processed_transcript |
| -477610 | enst00000616311 | sg00000237094 | al732372.2-213 | 1 | 494771 | 498976 | - | lnc_RNA | processed_transcript |
| -477610 | enst00000616947 | sg00000237094 | al732372.2-219 | 1 | 497275 | 498976 | - | lnc_RNA | processed_transcript |
| -478130 | enst00000599771 | sg00000237094 | al732372.2-214 | 1 | 497134 | 498456 | - | lnc_RNA | processed_transcript |
| -479327 | enst00000455464 | sg00000237094 | al732372.2-205 | 1 | 476364 | 497259 | - | lnc_RNA | processed_transcript |
| -479981 | enst00000419160 | sg00000237094 | al732372.2-209 | 1 | 494382 | 496605 | - | lnc_RNA | processed_transcript |
| -481110 | enst00000601814 | sg00000237094 | al732372.2-206 | 1 | 484832 | 495476 | - | lnc_RNA | processed_transcript |
| -481218 | enst00000642074 | sg00000237094 | al732372.2-211 | 1 | 494475 | 495368 | - | lnc_RNA | processed_transcript |
| -483345 | enst00000514436 | sg00000250575 | al732372.3-201 | 1 | 491225 | 493241 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 483912 | enst00000484537 | sg00000215915 | atad3c-203 | 1 | 1462483 | 1468663 | + | lnc_RNA | retained_intron |
| -487033 | enst00000431812 | sg00000237094 | al732372.2-208 | 1 | 485066 | 489553 | - | lnc_RNA | processed_transcript |
| -489485 | enst00000432723 | sg00000233653 | cicp7-201 | 1 | 487101 | 489906 | + | pseudogenic_transcript | processed_pseudogene |
| -491378 | enst00000455207 | sg00000237094 | al732372.2-204 | 1 | 373182 | 485208 | - | lnc_RNA | processed_transcript |
| -491378 | enst00000445840 | sg00000237094 | al732372.2-207 | 1 | 485026 | 485208 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 493194 | enst00000673477 | sg00000160072 | atad3b-206 | 1 | 1471765 | 1497848 | + | mRNA | protein_coding |
| 493213 | enst00000308647 | sg00000160072 | atad3b-201 | 1 | 1471784 | 1496201 | + | mRNA | protein_coding |
| 499455 | enst00000472194 | sg00000160072 | atad3b-203 | 1 | 1478026 | 1497848 | + | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc