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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #62 | 22 | 23838197 | 23839612 | 1415 | 3 | 48 | 1.98247e-20 | 3.17994e-18 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000404056 | sg00000099958 | derl3-203 | 22 | 23834503 | 23839006 | - | mRNA | protein_coding |
| 0 | enst00000290730 | sg00000099958 | derl3-201 | 22 | 23834503 | 23839128 | - | lnc_RNA | retained_intron |
| 0 | enst00000488272 | sg00000099958 | derl3-209 | 22 | 23836734 | 23838203 | - | lnc_RNA | processed_transcript |
| 0 | enst00000318109 | sg00000099958 | derl3-202 | 22 | 23836734 | 23839004 | - | mRNA | protein_coding |
| 0 | enst00000476077 | sg00000099958 | derl3-208 | 22 | 23836734 | 23839012 | - | mRNA | protein_coding |
| 0 | enst00000464110 | sg00000099958 | derl3-207 | 22 | 23836767 | 23839004 | - | lnc_RNA | retained_intron |
| 0 | enst00000406855 | sg00000099958 | derl3-204 | 22 | 23834503 | 23839006 | - | mRNA | protein_coding |
| -499 | enst00000464034 | sg00000099958 | derl3-206 | 22 | 23836734 | 23837698 | - | lnc_RNA | processed_transcript |
| -513 | enst00000493596 | sg00000099958 | derl3-210 | 22 | 23836465 | 23837684 | - | lnc_RNA | processed_transcript |
| -1683 | enst00000464023 | sg00000099958 | derl3-205 | 22 | 23834503 | 23836514 | - | lnc_RNA | processed_transcript |
| -15089 | enst00000645799 | sg00000099956 | smarcb1-217 | 22 | 23823108 | 23834353 | + | lnc_RNA | retained_intron |
| 17091 | enst00000345044 | sg00000133460 | slc2a11-203 | 22 | 23856703 | 23886309 | + | mRNA | protein_coding |
| 17251 | enst00000403208 | sg00000133460 | slc2a11-205 | 22 | 23856863 | 23870182 | + | mRNA | protein_coding |
| 17260 | enst00000398356 | sg00000133460 | slc2a11-204 | 22 | 23856872 | 23885536 | + | mRNA | protein_coding |
| 17322 | enst00000405847 | sg00000133460 | slc2a11-208 | 22 | 23856934 | 23877328 | + | mRNA | protein_coding |
| 17334 | enst00000467660 | sg00000133460 | slc2a11-214 | 22 | 23856946 | 23882952 | + | lnc_RNA | processed_transcript |
| 17339 | enst00000405286 | sg00000133460 | slc2a11-206 | 22 | 23856951 | 23882951 | + | lnc_RNA | processed_transcript |
| 17345 | enst00000489322 | sg00000133460 | slc2a11-220 | 22 | 23856957 | 23885551 | + | lnc_RNA | retained_intron |
| 17345 | enst00000255830 | sg00000133460 | slc2a11-201 | 22 | 23856957 | 23884933 | + | mRNA | nonsense_mediated_decay |
| 17350 | enst00000440493 | sg00000133460 | slc2a11-212 | 22 | 23856962 | 23866806 | + | lnc_RNA | processed_transcript |
| 17388 | enst00000611880 | sg00000133460 | slc2a11-223 | 22 | 23857000 | 23886112 | + | mRNA | protein_coding |
| 17388 | enst00000473740 | sg00000133460 | slc2a11-217 | 22 | 23857000 | 23875211 | + | lnc_RNA | retained_intron |
| 17427 | enst00000609825 | sg00000272973 | ap000350.5-201 | 22 | 23856427 | 23857039 | - | lnc_RNA | lncrna |
| 17724 | enst00000492516 | sg00000133460 | slc2a11-222 | 22 | 23857336 | 23862325 | + | lnc_RNA | retained_intron |
| 17805 | enst00000423972 | sg00000133460 | slc2a11-210 | 22 | 23857417 | 23877287 | + | mRNA | nonsense_mediated_decay |
| 17859 | enst00000418102 | sg00000133460 | slc2a11-209 | 22 | 23857471 | 23875189 | + | mRNA | nonsense_mediated_decay |
| 18263 | enst00000491948 | sg00000133460 | slc2a11-221 | 22 | 23857875 | 23868796 | + | lnc_RNA | retained_intron |
| 18283 | enst00000436643 | sg00000133460 | slc2a11-211 | 22 | 23857895 | 23877172 | + | mRNA | nonsense_mediated_decay |
| 18307 | enst00000405340 | sg00000133460 | slc2a11-207 | 22 | 23857919 | 23885553 | + | mRNA | nonsense_mediated_decay |
| 18349 | enst00000461809 | sg00000133460 | slc2a11-213 | 22 | 23857961 | 23885536 | + | lnc_RNA | retained_intron |
| 18351 | enst00000316185 | sg00000133460 | slc2a11-202 | 22 | 23857963 | 23884867 | + | mRNA | protein_coding |
| 22576 | enst00000433835 | sg00000251357 | ap000350.4-201 | 22 | 23862188 | 23895223 | + | mRNA | protein_coding |
| -23206 | enst00000477836 | sg00000099956 | smarcb1-206 | 22 | 23814991 | 23833587 | + | lnc_RNA | retained_intron |
| 33665 | enst00000624923 | sg00000279467 | ap000350.7-201 | 22 | 23865248 | 23873277 | - | lnc_RNA | lncrna |
| 35548 | enst00000482576 | sg00000133460 | slc2a11-218 | 22 | 23875160 | 23882952 | + | lnc_RNA | processed_transcript |
| -35650 | enst00000642275 | sg00000099956 | smarcb1-210 | 22 | 23802547 | 23818580 | + | lnc_RNA | retained_intron |
| -36196 | enst00000644467 | sg00000099956 | smarcb1-215 | 22 | 23802001 | 23818669 | + | lnc_RNA | retained_intron |
| -36898 | enst00000642727 | sg00000099956 | smarcb1-211 | 22 | 23801299 | 23803629 | + | mRNA | nonsense_mediated_decay |
| 38246 | enst00000472526 | sg00000133460 | slc2a11-215 | 22 | 23877858 | 23884784 | + | lnc_RNA | processed_transcript |
| 40178 | enst00000491172 | sg00000244425 | rn7sl268p-201 | 22 | 23879493 | 23879790 | - | ncRNA | misc_rna |
| 40797 | enst00000473357 | sg00000133460 | slc2a11-216 | 22 | 23880409 | 23883307 | + | lnc_RNA | retained_intron |
| 43348 | enst00000486907 | sg00000133460 | slc2a11-219 | 22 | 23882960 | 23885536 | + | lnc_RNA | retained_intron |
| -46386 | enst00000634926 | sg00000099956 | smarcb1-208 | 22 | 23791811 | 23803322 | + | mRNA | protein_coding |
| -46386 | enst00000635578 | sg00000099956 | smarcb1-209 | 22 | 23791811 | 23803322 | + | mRNA | protein_coding |
| -46396 | enst00000644462 | sg00000099956 | smarcb1-214 | 22 | 23791801 | 23834358 | + | mRNA | nonsense_mediated_decay |
| -50939 | enst00000646911 | sg00000099956 | smarcb1-220 | 22 | 23787258 | 23826248 | + | lnc_RNA | retained_intron |
| -50995 | enst00000643421 | sg00000099956 | smarcb1-212 | 22 | 23787202 | 23804383 | + | lnc_RNA | retained_intron |
| -51015 | enst00000646723 | sg00000099956 | smarcb1-219 | 22 | 23787182 | 23834270 | + | lnc_RNA | retained_intron |
| -51170 | enst00000417137 | sg00000099956 | smarcb1-205 | 22 | 23787027 | 23816833 | + | mRNA | protein_coding |
| -51180 | enst00000407082 | sg00000099956 | smarcb1-203 | 22 | 23787017 | 23803401 | + | mRNA | protein_coding |
| -51186 | enst00000263121 | sg00000099956 | smarcb1-201 | 22 | 23787011 | 23834501 | + | mRNA | protein_coding |
| -51196 | enst00000644619 | sg00000099956 | smarcb1-216 | 22 | 23787001 | 23816927 | + | mRNA | nonsense_mediated_decay |
| -51214 | enst00000647057 | sg00000099956 | smarcb1-221 | 22 | 23786983 | 23834505 | + | mRNA | nonsense_mediated_decay |
| -51217 | enst00000491967 | sg00000099956 | smarcb1-207 | 22 | 23786980 | 23802060 | + | lnc_RNA | retained_intron |
| -51219 | enst00000646421 | sg00000099956 | smarcb1-218 | 22 | 23786978 | 23802275 | + | lnc_RNA | retained_intron |
| -51234 | enst00000344921 | sg00000099956 | smarcb1-202 | 22 | 23786963 | 23834505 | + | mRNA | protein_coding |
| -51251 | enst00000644036 | sg00000099956 | smarcb1-213 | 22 | 23786946 | 23838008 | + | mRNA | protein_coding |
| -51266 | enst00000407422 | sg00000099956 | smarcb1-204 | 22 | 23786931 | 23834540 | + | mRNA | protein_coding |
| 54771 | enst00000215754 | sg00000240972 | mif-201 | 22 | 23894383 | 23895223 | + | mRNA | protein_coding |
| 54838 | enst00000465752 | sg00000240972 | mif-202 | 22 | 23894450 | 23895227 | + | lnc_RNA | retained_intron |
| 55086 | enst00000498385 | sg00000240972 | mif-203 | 22 | 23894698 | 23895227 | + | lnc_RNA | retained_intron |
| -56383 | enst00000480185 | sg00000099953 | mmp11-209 | 22 | 23781814 | 23782483 | + | lnc_RNA | processed_transcript |
| -56933 | enst00000488363 | sg00000099953 | mmp11-210 | 22 | 23781264 | 23782628 | + | lnc_RNA | processed_transcript |
| -57240 | enst00000492464 | sg00000099953 | mmp11-212 | 22 | 23780957 | 23781751 | + | lnc_RNA | retained_intron |
| -57256 | enst00000493132 | sg00000099953 | mmp11-213 | 22 | 23780941 | 23782315 | + | lnc_RNA | retained_intron |
| -57317 | enst00000434318 | sg00000099953 | mmp11-203 | 22 | 23780880 | 23783441 | + | mRNA | nonsense_mediated_decay |
| 59318 | enst00000406213 | sg00000218537 | mif-as1-201 | 22 | 23894426 | 23898930 | - | lnc_RNA | lncrna |
| -60556 | enst00000460352 | sg00000099953 | mmp11-205 | 22 | 23777641 | 23781100 | + | lnc_RNA | processed_transcript |
| -65348 | enst00000437086 | sg00000099953 | mmp11-204 | 22 | 23772849 | 23784316 | + | mRNA | nonsense_mediated_decay |
| -65348 | enst00000215743 | sg00000099953 | mmp11-201 | 22 | 23772849 | 23784316 | + | mRNA | protein_coding |
| -65351 | enst00000428253 | sg00000099953 | mmp11-202 | 22 | 23772846 | 23780484 | + | mRNA | nonsense_mediated_decay |
| -65351 | enst00000465730 | sg00000099953 | mmp11-207 | 22 | 23772846 | 23779697 | + | lnc_RNA | retained_intron |
| 67456 | enst00000609510 | sg00000273295 | ap000350.6-201 | 22 | 23901432 | 23907068 | - | lnc_RNA | lncrna |
| -69537 | enst00000489582 | sg00000099953 | mmp11-211 | 22 | 23768660 | 23780666 | + | lnc_RNA | processed_transcript |
| -69554 | enst00000477567 | sg00000099953 | mmp11-208 | 22 | 23768643 | 23781007 | + | lnc_RNA | processed_transcript |
| -69754 | enst00000484558 | sg00000250479 | chchd10-202 | 22 | 23765834 | 23768443 | - | mRNA | protein_coding |
| -69971 | enst00000465385 | sg00000099953 | mmp11-206 | 22 | 23768226 | 23784316 | + | lnc_RNA | retained_intron |
| -70255 | enst00000401675 | sg00000250479 | chchd10-201 | 22 | 23765834 | 23767942 | - | mRNA | protein_coding |
| -70277 | enst00000517886 | sg00000250479 | chchd10-203 | 22 | 23765935 | 23767920 | - | mRNA | nonsense_mediated_decay |
| -70321 | enst00000520222 | sg00000250479 | chchd10-204 | 22 | 23765834 | 23767876 | - | mRNA | protein_coding |
| -71733 | enst00000523865 | sg00000250479 | chchd10-205 | 22 | 23765874 | 23766464 | - | lnc_RNA | retained_intron |
| -74974 | enst00000382821 | sg00000169314 | c22orf15-202 | 22 | 23763223 | 23765861 | + | mRNA | protein_coding |
| -74990 | enst00000305199 | sg00000169314 | c22orf15-201 | 22 | 23763207 | 23765861 | + | mRNA | protein_coding |
| -75143 | enst00000402217 | sg00000169314 | c22orf15-203 | 22 | 23763054 | 23765861 | + | mRNA | protein_coding |
| -75176 | enst00000498542 | sg00000169314 | c22orf15-205 | 22 | 23763021 | 23764363 | + | lnc_RNA | retained_intron |
| -75176 | enst00000477921 | sg00000169314 | c22orf15-204 | 22 | 23763021 | 23765861 | + | lnc_RNA | retained_intron |
| -83772 | enst00000248948 | sg00000128218 | vpreb3-201 | 22 | 23752743 | 23754425 | - | mRNA | protein_coding |
| -83788 | enst00000398465 | sg00000128218 | vpreb3-202 | 22 | 23752743 | 23754409 | - | mRNA | protein_coding |
| -87085 | enst00000341976 | sg00000187792 | znf70-201 | 22 | 23738682 | 23751112 | - | mRNA | protein_coding |
| 87288 | enst00000439492 | sg00000225282 | ap000350.2-201 | 22 | 23926900 | 23929574 | + | pseudogenic_transcript | processed_pseudogene |
| 100386 | enst00000443377 | sg00000206090 | ap000350.1-201 | 22 | 23939998 | 23942798 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 110306 | enst00000440099 | sg00000231271 | ap000350.3-201 | 22 | 23949918 | 23954042 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -120841 | enst00000422506 | sg00000228315 | gusbp11-202 | 22 | 23638487 | 23717356 | - | lnc_RNA | lncrna |
| -120841 | enst00000437294 | sg00000272578 | ap000347.1-209 | 22 | 23714186 | 23717356 | - | lnc_RNA | processed_transcript |
| -120841 | enst00000445682 | sg00000228315 | gusbp11-206 | 22 | 23638487 | 23717356 | - | lnc_RNA | lncrna |
| -120850 | enst00000421064 | sg00000228315 | gusbp11-201 | 22 | 23653169 | 23717347 | - | lnc_RNA | lncrna |
| -120870 | enst00000444220 | sg00000272578 | ap000347.1-208 | 22 | 23709841 | 23717327 | - | lnc_RNA | processed_transcript |
| -120876 | enst00000452737 | sg00000228315 | gusbp11-208 | 22 | 23638487 | 23717321 | - | lnc_RNA | lncrna |
| -120876 | enst00000451837 | sg00000228315 | gusbp11-207 | 22 | 23638487 | 23717321 | - | lnc_RNA | lncrna |
| -120902 | enst00000435868 | sg00000272578 | ap000347.1-202 | 22 | 23659869 | 23717295 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -120930 | enst00000432595 | sg00000272578 | ap000347.1-207 | 22 | 23700789 | 23717267 | - | lnc_RNA | processed_transcript |
| 121541 | enst00000404172 | sg00000133433 | gstt2b-202 | 22 | 23957619 | 23961153 | - | mRNA | protein_coding |
| 121574 | enst00000290765 | sg00000133433 | gstt2b-201 | 22 | 23957414 | 23961186 | - | mRNA | protein_coding |
| 124168 | enst00000423307 | sg00000228039 | ac253536.2-201 | 22 | 23963780 | 23964374 | + | pseudogenic_transcript | processed_pseudogene |
| 127276 | enst00000215770 | sg00000099974 | ddtl-201 | 22 | 23966888 | 23972556 | + | mRNA | protein_coding |
| 129599 | enst00000609736 | sg00000272787 | ac253536.6-201 | 22 | 23969211 | 23969873 | + | lnc_RNA | lncrna |
| 133571 | enst00000428792 | sg00000099977 | ddt-204 | 22 | 23971370 | 23973183 | - | mRNA | protein_coding |
| 134847 | enst00000430101 | sg00000099977 | ddt-205 | 22 | 23973104 | 23974459 | - | mRNA | protein_coding |
| 134847 | enst00000403754 | sg00000099977 | ddt-203 | 22 | 23973104 | 23974459 | - | mRNA | protein_coding |
| 134879 | enst00000444947 | sg00000099977 | ddt-206 | 22 | 23973081 | 23974491 | - | lnc_RNA | retained_intron |
| 134972 | enst00000398344 | sg00000099977 | ddt-202 | 22 | 23971365 | 23974584 | - | mRNA | protein_coding |
| -137354 | enst00000651432 | sg00000228315 | gusbp11-210 | 22 | 23653184 | 23700843 | - | lnc_RNA | lncrna |
| 137973 | enst00000506097 | sg00000250470 | ac253536.5-201 | 22 | 23976904 | 23977585 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -140127 | enst00000460167 | sg00000159496 | rgl4-207 | 22 | 23698070 | 23698544 | + | lnc_RNA | processed_transcript |
| 140216 | enst00000350608 | sg00000099977 | ddt-201 | 22 | 23971365 | 23979828 | - | mRNA | protein_coding |
| 140446 | enst00000402588 | sg00000099984 | gstt2-201 | 22 | 23980058 | 23983710 | + | mRNA | polymorphic_pseudogene |
| 140446 | enst00000634759 | sg00000099984 | gstt2-203 | 22 | 23980058 | 23983915 | + | mRNA | polymorphic_pseudogene |
| 140511 | enst00000621118 | sg00000099984 | gstt2-202 | 22 | 23980123 | 23983911 | + | mRNA | protein_coding |
| 140857 | enst00000404092 | sg00000285762 | ac253536.7-201 | 22 | 23971378 | 23980469 | - | mRNA | protein_coding |
| -141713 | enst00000452208 | sg00000159496 | rgl4-205 | 22 | 23696484 | 23699176 | + | mRNA | protein_coding |
| -145012 | enst00000417194 | sg00000272578 | ap000347.1-201 | 22 | 23658094 | 23693185 | - | lnc_RNA | processed_transcript |
| -145046 | enst00000455485 | sg00000228315 | gusbp11-209 | 22 | 23638487 | 23693151 | - | lnc_RNA | lncrna |
| -146891 | enst00000423392 | sg00000159496 | rgl4-203 | 22 | 23691306 | 23698978 | + | mRNA | protein_coding |
| -146891 | enst00000460003 | sg00000159496 | rgl4-206 | 22 | 23691306 | 23698978 | + | lnc_RNA | retained_intron |
| -146891 | enst00000467354 | sg00000159496 | rgl4-208 | 22 | 23691306 | 23699176 | + | lnc_RNA | retained_intron |
| -147336 | enst00000615003 | sg00000159496 | rgl4-210 | 22 | 23690861 | 23699171 | + | mRNA | protein_coding |
| -147336 | enst00000612432 | sg00000159496 | rgl4-209 | 22 | 23690861 | 23698651 | + | mRNA | protein_coding |
| -147336 | enst00000290691 | sg00000159496 | rgl4-201 | 22 | 23690861 | 23699176 | + | mRNA | protein_coding |
| -147706 | enst00000438858 | sg00000272578 | ap000347.1-203 | 22 | 23659876 | 23690491 | - | lnc_RNA | processed_transcript |
| -147900 | enst00000458554 | sg00000272578 | ap000347.1-204 | 22 | 23678610 | 23690297 | - | lnc_RNA | processed_transcript |
| -147904 | enst00000423913 | sg00000228315 | gusbp11-203 | 22 | 23652860 | 23690293 | - | lnc_RNA | lncrna |
| -150055 | enst00000401461 | sg00000159496 | rgl4-202 | 22 | 23688142 | 23699176 | + | mRNA | protein_coding |
| -150061 | enst00000441897 | sg00000159496 | rgl4-204 | 22 | 23688136 | 23699176 | + | mRNA | nonsense_mediated_decay |
| -150217 | enst00000451919 | sg00000272578 | ap000347.1-205 | 22 | 23683725 | 23687980 | - | lnc_RNA | processed_transcript |
| -150378 | enst00000437862 | sg00000272578 | ap000347.1-206 | 22 | 23683744 | 23687819 | - | lnc_RNA | processed_transcript |
| -151283 | enst00000434893 | sg00000228315 | gusbp11-205 | 22 | 23653170 | 23686914 | - | lnc_RNA | lncrna |
| 151809 | enst00000437021 | sg00000224205 | ac253536.1-201 | 22 | 23976872 | 23991421 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 165749 | enst00000617532 | sg00000276950 | gstt4-203 | 22 | 24000150 | 24005361 | - | mRNA | nonsense_mediated_decay |
| 165749 | enst00000611600 | sg00000276950 | gstt4-201 | 22 | 23998401 | 24005361 | - | mRNA | nonsense_mediated_decay |
| 165797 | enst00000621179 | sg00000276950 | gstt4-204 | 22 | 23998401 | 24005409 | - | mRNA | protein_coding |
| 165841 | enst00000612717 | sg00000276950 | gstt4-202 | 22 | 23998490 | 24005453 | - | lnc_RNA | retained_intron |
| 168646 | enst00000440539 | sg00000235689 | ac253536.4-201 | 22 | 24006305 | 24008258 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 171580 | enst00000454754 | sg00000099991 | cabin1-206 | 22 | 24011192 | 24056304 | + | mRNA | protein_coding |
| 171692 | enst00000263119 | sg00000099991 | cabin1-201 | 22 | 24011304 | 24178628 | + | mRNA | protein_coding |
| 171703 | enst00000617531 | sg00000099991 | cabin1-214 | 22 | 24011315 | 24178628 | + | mRNA | protein_coding |
| 171736 | enst00000405822 | sg00000099991 | cabin1-204 | 22 | 24011348 | 24178628 | + | mRNA | protein_coding |
| 171804 | enst00000445422 | sg00000099991 | cabin1-205 | 22 | 24011416 | 24056318 | + | mRNA | protein_coding |
| 171806 | enst00000398319 | sg00000099991 | cabin1-203 | 22 | 24011418 | 24178628 | + | mRNA | protein_coding |
| -184863 | enst00000428790 | sg00000244723 | aslp1-201 | 22 | 23649213 | 23653334 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -185311 | enst00000430357 | sg00000228315 | gusbp11-204 | 22 | 23638487 | 23652886 | - | lnc_RNA | lncrna |
| -197435 | enst00000430707 | sg00000234353 | ap000346.2-201 | 22 | 23638492 | 23640762 | - | lnc_RNA | processed_transcript |
| -197772 | enst00000425948 | sg00000234353 | ap000346.2-202 | 22 | 23638678 | 23640425 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -199256 | enst00000390329 | sg00000211683 | ap000346.1-201 | 22 | 23630618 | 23638941 | - | lnc_RNA | lncrna |
| -205876 | enst00000317749 | sg00000189269 | drich1-201 | 22 | 23608452 | 23632321 | - | mRNA | protein_coding |
| -206174 | enst00000614553 | sg00000189269 | drich1-202 | 22 | 23613287 | 23632023 | - | mRNA | protein_coding |
| 215456 | enst00000474981 | sg00000099991 | cabin1-209 | 22 | 24055068 | 24056525 | + | lnc_RNA | retained_intron |
| 227393 | enst00000484593 | sg00000099991 | cabin1-210 | 22 | 24067005 | 24071183 | + | lnc_RNA | retained_intron |
| -227868 | enst00000622821 | sg00000275609 | ap000346.3-201 | 22 | 23610329 | 23610538 | + | pseudogenic_transcript | processed_pseudogene |
| -231156 | enst00000614827 | sg00000278655 | ap000346.4-201 | 22 | 23607041 | 23608407 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 247976 | enst00000496016 | sg00000099991 | cabin1-213 | 22 | 24087588 | 24092013 | + | lnc_RNA | retained_intron |
| -254338 | enst00000608615 | sg00000272733 | ap000345.2-201 | 22 | 23580880 | 23583859 | - | lnc_RNA | lncrna |
| -257895 | enst00000438703 | sg00000128322 | igll1-203 | 22 | 23573369 | 23580302 | - | mRNA | protein_coding |
| -257907 | enst00000330377 | sg00000128322 | igll1-202 | 22 | 23573125 | 23580290 | - | mRNA | protein_coding |
| -257958 | enst00000249053 | sg00000128322 | igll1-201 | 22 | 23573125 | 23580239 | - | mRNA | protein_coding |
| 258501 | enst00000467937 | sg00000099991 | cabin1-208 | 22 | 24098113 | 24119606 | + | lnc_RNA | retained_intron |
| 262077 | enst00000444093 | sg00000232545 | ac253536.3-201 | 22 | 24101689 | 24103354 | + | lnc_RNA | lncrna |
| -271133 | enst00000458318 | sg00000224277 | ap000345.1-202 | 22 | 23567064 | 23573507 | + | lnc_RNA | lncrna |
| -271133 | enst00000454863 | sg00000224277 | ap000345.1-201 | 22 | 23567064 | 23573122 | + | lnc_RNA | lncrna |
| -294334 | enst00000627127 | sg00000280623 | pcat14-202 | 22 | 23543863 | 23547797 | + | lnc_RNA | lncrna |
| -301298 | enst00000626825 | sg00000280623 | pcat14-201 | 22 | 23536899 | 23547167 | + | lnc_RNA | lncrna |
| -301316 | enst00000629869 | sg00000280623 | pcat14-203 | 22 | 23536881 | 23539480 | + | lnc_RNA | lncrna |
| 316226 | enst00000337989 | sg00000099991 | cabin1-202 | 22 | 24155838 | 24178627 | + | mRNA | protein_coding |
| 316921 | enst00000495121 | sg00000099991 | cabin1-212 | 22 | 24156533 | 24164489 | + | lnc_RNA | processed_transcript |
| -324595 | enst00000432249 | sg00000225413 | linc02557-201 | 22 | 23512494 | 23513602 | - | lnc_RNA | lncrna |
| 327611 | enst00000485008 | sg00000099991 | cabin1-211 | 22 | 24167223 | 24173398 | + | lnc_RNA | processed_transcript |
| -328043 | enst00000653461 | sg00000287864 | ap000345.3-201 | 22 | 23510154 | 23512662 | + | lnc_RNA | lncrna |
| 336167 | enst00000459824 | sg00000099991 | cabin1-207 | 22 | 24175779 | 24177538 | + | lnc_RNA | retained_intron |
| 341875 | enst00000358321 | sg00000099994 | susd2-201 | 22 | 24181487 | 24189106 | + | mRNA | protein_coding |
| 342965 | enst00000463101 | sg00000099994 | susd2-202 | 22 | 24182577 | 24189106 | + | lnc_RNA | retained_intron |
| -351217 | enst00000320372 | sg00000178248 | fam230i-201 | 22 | 23462086 | 23486980 | - | lnc_RNA | lncrna |
| -377848 | enst00000426024 | sg00000227755 | ap000344.1-203 | 22 | 23460349 | 23460511 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| -379818 | enst00000457193 | sg00000227755 | ap000344.1-202 | 22 | 23458379 | 23460833 | + | lnc_RNA | processed_transcript |
| 386500 | enst00000425408 | sg00000099998 | ggt5-205 | 22 | 24219660 | 24226112 | - | mRNA | protein_coding |
| -391599 | enst00000454268 | sg00000227755 | ap000344.1-201 | 22 | 23446598 | 23460788 | + | lnc_RNA | processed_transcript |
| -404026 | enst00000428415 | sg00000234928 | linc01659-201 | 22 | 23434171 | 23434731 | + | lnc_RNA | lncrna |
| -404633 | enst00000449711 | sg00000234928 | linc01659-202 | 22 | 23433564 | 23435071 | + | lnc_RNA | lncrna |
| 405447 | enst00000398292 | sg00000099998 | ggt5-203 | 22 | 24219660 | 24245059 | - | mRNA | protein_coding |
| 405466 | enst00000263112 | sg00000099998 | ggt5-201 | 22 | 24219654 | 24245078 | - | mRNA | protein_coding |
| 405470 | enst00000424217 | sg00000099998 | ggt5-204 | 22 | 24232973 | 24245082 | - | mRNA | protein_coding |
| 405496 | enst00000623756 | sg00000099998 | ggt5-206 | 22 | 24241089 | 24245108 | - | lnc_RNA | retained_intron |
| 405530 | enst00000327365 | sg00000099998 | ggt5-202 | 22 | 24219654 | 24245142 | - | mRNA | protein_coding |
| 409854 | enst00000402176 | sg00000230712 | ggtlc4p-201 | 22 | 24248074 | 24249466 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 412216 | enst00000414583 | sg00000128262 | pom121l9p-201 | 22 | 24251828 | 24265525 | + | lnc_RNA | processed_transcript |
| 412393 | enst00000441984 | sg00000128262 | pom121l9p-203 | 22 | 24252005 | 24253289 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 417022 | enst00000419222 | sg00000128262 | pom121l9p-202 | 22 | 24256634 | 24261900 | + | lnc_RNA | processed_transcript |
| 424152 | enst00000444246 | sg00000225098 | bcrp1-201 | 22 | 24259929 | 24263764 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 430522 | enst00000396982 | sg00000215464 | ap000354.1-201 | 22 | 24269346 | 24270134 | - | pseudogenic_transcript | processed_pseudogene |
| 431205 | enst00000437398 | sg00000100014 | specc1l-204 | 22 | 24270817 | 24417739 | + | mRNA | protein_coding |
| 431210 | enst00000421374 | sg00000100014 | specc1l-203 | 22 | 24270822 | 24330401 | + | mRNA | protein_coding |
| 431219 | enst00000314328 | sg00000100014 | specc1l-201 | 22 | 24270831 | 24417738 | + | mRNA | protein_coding |
| 431225 | enst00000651059 | sg00000100014 | specc1l-208 | 22 | 24270837 | 24417206 | + | mRNA | protein_coding |
| 431271 | enst00000416735 | sg00000100014 | specc1l-202 | 22 | 24270883 | 24324304 | + | lnc_RNA | processed_transcript |
| 431271 | enst00000541492 | sg00000100014 | specc1l-207 | 22 | 24270883 | 24414773 | + | mRNA | protein_coding |
| 431286 | enst00000358654 | sg00000258555 | specc1l-adora2a-201 | 22 | 24270898 | 24442356 | + | mRNA | nonsense_mediated_decay |
| -435471 | enst00000433168 | sg00000133519 | zdhhc8p1-204 | 22 | 23390606 | 23402726 | - | lnc_RNA | processed_transcript |
| -435625 | enst00000420968 | sg00000133519 | zdhhc8p1-203 | 22 | 23391377 | 23402572 | - | lnc_RNA | processed_transcript |
| -435630 | enst00000255890 | sg00000133519 | zdhhc8p1-201 | 22 | 23390606 | 23402567 | - | lnc_RNA | processed_transcript |
| -436040 | enst00000418264 | sg00000133519 | zdhhc8p1-202 | 22 | 23397938 | 23402157 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -438589 | enst00000456279 | sg00000133519 | zdhhc8p1-205 | 22 | 23392585 | 23399608 | - | lnc_RNA | processed_transcript |
| -445644 | enst00000512987 | sg00000248409 | ap000344.2-201 | 22 | 23392553 | 23394792 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -450466 | enst00000415114 | sg00000215478 | ces5ap1-202 | 22 | 23370095 | 23387731 | - | lnc_RNA | processed_transcript |
| -457445 | enst00000431237 | sg00000215478 | ces5ap1-205 | 22 | 23370095 | 23380752 | - | lnc_RNA | processed_transcript |
| -461126 | enst00000424029 | sg00000215478 | ces5ap1-204 | 22 | 23373648 | 23377071 | - | lnc_RNA | processed_transcript |
| -461183 | enst00000400418 | sg00000215478 | ces5ap1-201 | 22 | 23359603 | 23377014 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -461301 | enst00000422151 | sg00000215478 | ces5ap1-203 | 22 | 23366302 | 23376896 | - | lnc_RNA | processed_transcript |
| 464784 | enst00000440893 | sg00000100014 | specc1l-205 | 22 | 24304396 | 24321688 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc