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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #67 | 17 | 48550301 | 48551868 | 1567 | 3 | 47 | 4.17148e-20 | 6.19184e-18 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -671 | enst00000465846 | sg00000233101 | hoxb-as3-203 | 17 | 48549630 | 48602332 | + | lnc_RNA | lncrna |
| 2054 | enst00000470495 | sg00000120093 | hoxb3-205 | 17 | 48548870 | 48553922 | - | mRNA | protein_coding |
| -3609 | enst00000502764 | sg00000230148 | hoxb-as1-202 | 17 | 48546692 | 48551248 | + | lnc_RNA | lncrna |
| 4653 | enst00000471459 | sg00000120093 | hoxb3-206 | 17 | 48551141 | 48556521 | - | mRNA | protein_coding |
| -4792 | enst00000508688 | sg00000230148 | hoxb-as1-204 | 17 | 48545509 | 48551076 | + | lnc_RNA | lncrna |
| 5075 | enst00000478644 | sg00000120093 | hoxb3-209 | 17 | 48555391 | 48556943 | - | lnc_RNA | retained_intron |
| -5312 | enst00000330070 | sg00000173917 | hoxb2-201 | 17 | 48542655 | 48544989 | - | mRNA | protein_coding |
| 5394 | enst00000464382 | sg00000239552 | hoxb-as2-201 | 17 | 48557262 | 48560333 | + | lnc_RNA | lncrna |
| -5950 | enst00000435312 | sg00000230148 | hoxb-as1-201 | 17 | 48544351 | 48551250 | + | lnc_RNA | lncrna |
| -6392 | enst00000571287 | sg00000173917 | hoxb2-203 | 17 | 48543159 | 48543909 | - | lnc_RNA | processed_transcript |
| -6750 | enst00000504972 | sg00000230148 | hoxb-as1-203 | 17 | 48543551 | 48546087 | + | lnc_RNA | lncrna |
| -7155 | enst00000504772 | sg00000173917 | hoxb2-202 | 17 | 48540894 | 48543146 | - | lnc_RNA | processed_transcript |
| -19290 | enst00000239174 | sg00000120094 | hoxb1-201 | 17 | 48528526 | 48531011 | - | mRNA | protein_coding |
| -19391 | enst00000577092 | sg00000120094 | hoxb1-202 | 17 | 48529497 | 48530910 | - | mRNA | protein_coding |
| 22155 | enst00000490677 | sg00000120093 | hoxb3-211 | 17 | 48550257 | 48574023 | - | mRNA | protein_coding |
| 22619 | enst00000311626 | sg00000120093 | hoxb3-201 | 17 | 48549885 | 48574487 | - | mRNA | protein_coding |
| 23682 | enst00000464266 | sg00000120093 | hoxb3-203 | 17 | 48573928 | 48575550 | - | lnc_RNA | retained_intron |
| 26482 | enst00000332503 | sg00000182742 | hoxb4-201 | 17 | 48575507 | 48578350 | - | mRNA | protein_coding |
| 27489 | enst00000465120 | sg00000120093 | hoxb3-204 | 17 | 48554285 | 48579357 | - | mRNA | protein_coding |
| 28079 | enst00000385043 | sg00000284038 | mir10a-201 | 17 | 48579838 | 48579947 | - | miRNA | mirna |
| 30391 | enst00000548801 | sg00000257178 | ac103702.1-201 | 17 | 48579630 | 48582259 | - | lnc_RNA | lncrna |
| 30754 | enst00000489475 | sg00000120093 | hoxb3-210 | 17 | 48550268 | 48582622 | - | mRNA | protein_coding |
| 38367 | enst00000476342 | sg00000120093 | hoxb3-208 | 17 | 48550334 | 48590235 | - | mRNA | protein_coding |
| 38370 | enst00000460160 | sg00000120093 | hoxb3-202 | 17 | 48550267 | 48590238 | - | mRNA | protein_coding |
| 38373 | enst00000472863 | sg00000120093 | hoxb3-207 | 17 | 48549812 | 48590241 | - | mRNA | protein_coding |
| 38404 | enst00000498678 | sg00000120093 | hoxb3-212 | 17 | 48550006 | 48590272 | - | mRNA | protein_coding |
| 38552 | enst00000476204 | sg00000233101 | hoxb-as3-208 | 17 | 48590420 | 48602108 | + | lnc_RNA | lncrna |
| 38574 | enst00000474040 | sg00000233101 | hoxb-as3-206 | 17 | 48590442 | 48601921 | + | lnc_RNA | lncrna |
| 38609 | enst00000467155 | sg00000233101 | hoxb-as3-205 | 17 | 48590477 | 48606393 | + | lnc_RNA | lncrna |
| 38613 | enst00000480872 | sg00000233101 | hoxb-as3-210 | 17 | 48590481 | 48602337 | + | lnc_RNA | lncrna |
| 40424 | enst00000429755 | sg00000233101 | hoxb-as3-201 | 17 | 48592292 | 48602337 | + | lnc_RNA | lncrna |
| 40445 | enst00000492897 | sg00000233101 | hoxb-as3-214 | 17 | 48592313 | 48602335 | + | lnc_RNA | lncrna |
| 40452 | enst00000487849 | sg00000233101 | hoxb-as3-212 | 17 | 48592320 | 48606394 | + | lnc_RNA | lncrna |
| 42093 | enst00000239151 | sg00000120075 | hoxb5-201 | 17 | 48591257 | 48593961 | - | mRNA | protein_coding |
| 44090 | enst00000481995 | sg00000233101 | hoxb-as3-211 | 17 | 48595958 | 48602332 | + | lnc_RNA | lncrna |
| 44092 | enst00000460041 | sg00000233101 | hoxb-as3-202 | 17 | 48595960 | 48601892 | + | lnc_RNA | lncrna |
| 44092 | enst00000474324 | sg00000233101 | hoxb-as3-207 | 17 | 48595960 | 48602331 | + | lnc_RNA | lncrna |
| 44112 | enst00000477144 | sg00000233101 | hoxb-as3-209 | 17 | 48595980 | 48602338 | + | lnc_RNA | lncrna |
| 44571 | enst00000466037 | sg00000233101 | hoxb-as3-204 | 17 | 48596439 | 48606394 | + | lnc_RNA | lncrna |
| 45266 | enst00000470193 | sg00000108511 | hoxb6-202 | 17 | 48596528 | 48597134 | - | lnc_RNA | processed_transcript |
| 50270 | enst00000491264 | sg00000233101 | hoxb-as3-213 | 17 | 48602138 | 48606394 | + | lnc_RNA | lncrna |
| 50623 | enst00000494420 | sg00000233101 | hoxb-as3-215 | 17 | 48602491 | 48606414 | + | lnc_RNA | lncrna |
| 52264 | enst00000490419 | sg00000108511 | hoxb6-204 | 17 | 48598211 | 48604132 | - | lnc_RNA | processed_transcript |
| 53044 | enst00000552000 | sg00000120093 | hoxb3-213 | 17 | 48573982 | 48604912 | - | lnc_RNA | processed_transcript |
| 53118 | enst00000225648 | sg00000108511 | hoxb6-201 | 17 | 48595751 | 48604986 | - | mRNA | protein_coding |
| 53124 | enst00000484302 | sg00000108511 | hoxb6-203 | 17 | 48595751 | 48604992 | - | mRNA | protein_coding |
| 56458 | enst00000467314 | sg00000260027 | hoxb7-202 | 17 | 48607716 | 48608326 | - | lnc_RNA | processed_transcript |
| 59149 | enst00000239165 | sg00000260027 | hoxb7-201 | 17 | 48607232 | 48611017 | - | mRNA | protein_coding |
| 61611 | enst00000498634 | sg00000120068 | hoxb8-202 | 17 | 48611377 | 48613479 | - | mRNA | protein_coding |
| 62836 | enst00000576562 | sg00000120068 | hoxb8-203 | 17 | 48613188 | 48614704 | - | mRNA | protein_coding |
| 63424 | enst00000239144 | sg00000120068 | hoxb8-201 | 17 | 48612346 | 48615292 | - | mRNA | protein_coding |
| -71204 | enst00000384078 | sg00000206805 | ac036222.2-201 | 17 | 48479097 | 48479198 | + | ncRNA | misc_rna |
| 74490 | enst00000311177 | sg00000170689 | hoxb9-201 | 17 | 48621156 | 48626358 | - | mRNA | protein_coding |
| 76807 | enst00000480386 | sg00000242207 | hoxb-as4-202 | 17 | 48628675 | 48634932 | + | lnc_RNA | lncrna |
| 77681 | enst00000462131 | sg00000242207 | hoxb-as4-201 | 17 | 48629549 | 48634661 | + | lnc_RNA | lncrna |
| 80691 | enst00000388006 | sg00000210741 | mir196a1-201 | 17 | 48632490 | 48632559 | - | miRNA | mirna |
| 81704 | enst00000567101 | sg00000260027 | hoxb7-203 | 17 | 48607627 | 48633572 | - | lnc_RNA | processed_transcript |
| 87242 | enst00000425510 | sg00000272763 | ac103702.2-203 | 17 | 48636546 | 48639110 | - | lnc_RNA | lncrna |
| 87417 | enst00000608940 | sg00000272763 | ac103702.2-202 | 17 | 48636538 | 48639285 | - | lnc_RNA | lncrna |
| -89931 | enst00000579972 | sg00000264451 | ac036222.3-201 | 17 | 48460370 | 48466040 | + | lnc_RNA | lncrna |
| 95055 | enst00000628006 | sg00000244649 | linc02086-204 | 17 | 48646923 | 48704212 | + | lnc_RNA | lncrna |
| 95061 | enst00000575202 | sg00000244649 | linc02086-203 | 17 | 48646929 | 48704422 | + | lnc_RNA | lncrna |
| 95155 | enst00000433510 | sg00000272763 | ac103702.2-201 | 17 | 48635923 | 48647023 | - | lnc_RNA | lncrna |
| -120026 | enst00000584709 | sg00000141293 | skap1-207 | 17 | 48133445 | 48430275 | - | mRNA | nonsense_mediated_decay |
| -120082 | enst00000584924 | sg00000141293 | skap1-208 | 17 | 48136938 | 48430219 | - | mRNA | protein_coding |
| -120087 | enst00000336915 | sg00000141293 | skap1-201 | 17 | 48133442 | 48430214 | - | mRNA | protein_coding |
| 129021 | enst00000629037 | sg00000244649 | linc02086-206 | 17 | 48680889 | 48704837 | + | lnc_RNA | lncrna |
| 129079 | enst00000628749 | sg00000244649 | linc02086-205 | 17 | 48680947 | 48704245 | + | lnc_RNA | lncrna |
| 131499 | enst00000492522 | sg00000244649 | linc02086-202 | 17 | 48683367 | 48706330 | + | lnc_RNA | lncrna |
| 138756 | enst00000474761 | sg00000244559 | ac091179.2-201 | 17 | 48690481 | 48690624 | - | pseudogenic_transcript | processed_pseudogene |
| 139826 | enst00000461606 | sg00000242067 | rpl9p28-201 | 17 | 48691116 | 48691694 | - | pseudogenic_transcript | processed_pseudogene |
| 153335 | enst00000478824 | sg00000244649 | linc02086-201 | 17 | 48705203 | 48707346 | + | lnc_RNA | lncrna |
| 153490 | enst00000669176 | sg00000244649 | linc02086-207 | 17 | 48705358 | 48707346 | + | lnc_RNA | lncrna |
| 161862 | enst00000489624 | sg00000241788 | cox6b1p2-201 | 17 | 48713730 | 48713959 | + | pseudogenic_transcript | processed_pseudogene |
| -167715 | enst00000363668 | sg00000200538 | ac036222.1-201 | 17 | 48382371 | 48382586 | - | snoRNA | snorna |
| -169931 | enst00000579033 | sg00000266222 | ac036222.4-201 | 17 | 48377262 | 48380370 | - | lnc_RNA | lncrna |
| 170650 | enst00000290294 | sg00000159182 | prac1-201 | 17 | 48721719 | 48722518 | - | mRNA | protein_coding |
| 171317 | enst00000422730 | sg00000229637 | prac2-201 | 17 | 48723185 | 48724758 | + | mRNA | protein_coding |
| 171320 | enst00000613209 | sg00000273750 | ac091179.3-201 | 17 | 48723188 | 48723314 | + | ncRNA | misc_rna |
| 171824 | enst00000432056 | sg00000229637 | prac2-202 | 17 | 48723692 | 48724751 | + | mRNA | protein_coding |
| 171824 | enst00000612962 | sg00000277542 | ac091179.4-201 | 17 | 48723692 | 48723772 | + | ncRNA | misc_rna |
| 172607 | enst00000583892 | sg00000263602 | mir3185-201 | 17 | 48724408 | 48724475 | - | miRNA | mirna |
| 177310 | enst00000290295 | sg00000159184 | hoxb13-201 | 17 | 48724763 | 48729178 | - | mRNA | protein_coding |
| 181223 | enst00000495536 | sg00000242407 | ac091179.1-201 | 17 | 48733091 | 48733888 | + | lnc_RNA | lncrna |
| -204296 | enst00000581400 | sg00000141293 | skap1-204 | 17 | 48137229 | 48346005 | - | mRNA | nonsense_mediated_decay |
| -204336 | enst00000581419 | sg00000141293 | skap1-205 | 17 | 48180108 | 48345965 | - | mRNA | nonsense_mediated_decay |
| 213979 | enst00000480790 | sg00000244514 | rn7sl125p-201 | 17 | 48765554 | 48765847 | - | ncRNA | misc_rna |
| 242426 | enst00000424018 | sg00000170703 | ttll6-204 | 17 | 48786249 | 48794294 | - | mRNA | nonsense_mediated_decay |
| 242466 | enst00000416950 | sg00000170703 | ttll6-203 | 17 | 48762241 | 48794334 | - | mRNA | nonsense_mediated_decay |
| 242466 | enst00000433608 | sg00000170703 | ttll6-205 | 17 | 48762235 | 48794334 | - | mRNA | protein_coding |
| -242973 | enst00000581362 | sg00000235300 | ac090627.1-203 | 17 | 48307328 | 48308762 | + | lnc_RNA | lncrna |
| 252118 | enst00000509809 | sg00000170703 | ttll6-209 | 17 | 48797130 | 48803986 | - | lnc_RNA | retained_intron |
| -255926 | enst00000604191 | sg00000235300 | ac090627.1-202 | 17 | 48294375 | 48307700 | + | lnc_RNA | lncrna |
| -255954 | enst00000421610 | sg00000235300 | ac090627.1-201 | 17 | 48294347 | 48307829 | + | lnc_RNA | lncrna |
| -255966 | enst00000621191 | sg00000235300 | ac090627.1-204 | 17 | 48294335 | 48307666 | + | lnc_RNA | lncrna |
| 265185 | enst00000490027 | sg00000170703 | ttll6-208 | 17 | 48762241 | 48817053 | - | lnc_RNA | retained_intron |
| 265209 | enst00000376681 | sg00000170703 | ttll6-201 | 17 | 48762243 | 48817077 | - | mRNA | nonsense_mediated_decay |
| 265243 | enst00000470462 | sg00000170703 | ttll6-207 | 17 | 48806174 | 48817111 | - | lnc_RNA | processed_transcript |
| 265273 | enst00000456415 | sg00000170703 | ttll6-206 | 17 | 48801559 | 48817141 | - | mRNA | nonsense_mediated_decay |
| 265346 | enst00000393382 | sg00000170703 | ttll6-202 | 17 | 48762241 | 48817214 | - | mRNA | protein_coding |
| 279120 | enst00000258947 | sg00000136436 | calcoco2-201 | 17 | 48830988 | 48865245 | + | mRNA | protein_coding |
| 279150 | enst00000503463 | sg00000136436 | calcoco2-206 | 17 | 48831018 | 48848562 | + | lnc_RNA | retained_intron |
| 279158 | enst00000509507 | sg00000136436 | calcoco2-215 | 17 | 48831026 | 48863050 | + | mRNA | protein_coding |
| 279166 | enst00000448105 | sg00000136436 | calcoco2-204 | 17 | 48831034 | 48863453 | + | mRNA | protein_coding |
| 279167 | enst00000510356 | sg00000136436 | calcoco2-217 | 17 | 48831035 | 48842662 | + | lnc_RNA | retained_intron |
| 279167 | enst00000575560 | sg00000136436 | calcoco2-227 | 17 | 48831035 | 48848245 | + | lnc_RNA | retained_intron |
| 279167 | enst00000570513 | sg00000136436 | calcoco2-225 | 17 | 48831035 | 48848401 | + | mRNA | protein_coding |
| 279167 | enst00000509415 | sg00000136436 | calcoco2-214 | 17 | 48831035 | 48851133 | + | mRNA | protein_coding |
| 279167 | enst00000513119 | sg00000136436 | calcoco2-221 | 17 | 48831035 | 48856174 | + | mRNA | protein_coding |
| 279167 | enst00000416445 | sg00000136436 | calcoco2-203 | 17 | 48831035 | 48863174 | + | mRNA | protein_coding |
| 279167 | enst00000508679 | sg00000136436 | calcoco2-211 | 17 | 48831035 | 48863196 | + | mRNA | protein_coding |
| 279169 | enst00000372317 | sg00000136436 | calcoco2-202 | 17 | 48831037 | 48842294 | + | lnc_RNA | processed_transcript |
| 279175 | enst00000576582 | sg00000136436 | calcoco2-228 | 17 | 48831043 | 48848443 | + | mRNA | nonsense_mediated_decay |
| 279177 | enst00000511697 | sg00000136436 | calcoco2-219 | 17 | 48831045 | 48842534 | + | lnc_RNA | processed_transcript |
| 279188 | enst00000505071 | sg00000136436 | calcoco2-207 | 17 | 48831056 | 48849269 | + | mRNA | protein_coding |
| 279360 | enst00000507076 | sg00000136436 | calcoco2-209 | 17 | 48831228 | 48848336 | + | mRNA | protein_coding |
| 289695 | enst00000502761 | sg00000136436 | calcoco2-205 | 17 | 48841563 | 48851124 | + | mRNA | protein_coding |
| 295856 | enst00000509014 | sg00000136436 | calcoco2-212 | 17 | 48847724 | 48848455 | + | lnc_RNA | retained_intron |
| 296341 | enst00000514962 | sg00000136436 | calcoco2-224 | 17 | 48848209 | 48853035 | + | lnc_RNA | retained_intron |
| 299114 | enst00000514267 | sg00000136436 | calcoco2-223 | 17 | 48850982 | 48851698 | + | lnc_RNA | retained_intron |
| 299233 | enst00000514006 | sg00000136436 | calcoco2-222 | 17 | 48851101 | 48852858 | + | lnc_RNA | retained_intron |
| 299339 | enst00000511816 | sg00000136436 | calcoco2-220 | 17 | 48851207 | 48852645 | + | lnc_RNA | retained_intron |
| 299735 | enst00000509112 | sg00000136436 | calcoco2-213 | 17 | 48851603 | 48853235 | + | lnc_RNA | retained_intron |
| 300472 | enst00000506971 | sg00000136436 | calcoco2-208 | 17 | 48852340 | 48860360 | + | lnc_RNA | retained_intron |
| 301093 | enst00000507306 | sg00000136436 | calcoco2-210 | 17 | 48852961 | 48863221 | + | mRNA | protein_coding |
| 303935 | enst00000575461 | sg00000136436 | calcoco2-226 | 17 | 48855803 | 48856267 | + | lnc_RNA | retained_intron |
| 304233 | enst00000509784 | sg00000136436 | calcoco2-216 | 17 | 48856101 | 48863125 | + | mRNA | nonsense_mediated_decay |
| 313217 | enst00000510997 | sg00000136436 | calcoco2-218 | 17 | 48865085 | 48866522 | + | lnc_RNA | processed_transcript |
| 323330 | enst00000504438 | sg00000248278 | sumo2p17-201 | 17 | 48874914 | 48875198 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| 328972 | enst00000391263 | sg00000212565 | ac068531.1-201 | 17 | 48880840 | 48880967 | + | snoRNA | snorna |
| 329254 | enst00000502398 | sg00000248895 | ac068531.2-201 | 17 | 48881122 | 48881316 | + | pseudogenic_transcript | processed_pseudogene |
| 340897 | enst00000355938 | sg00000159199 | atp5mc1-201 | 17 | 48892765 | 48895871 | + | mRNA | protein_coding |
| 340899 | enst00000513347 | sg00000159199 | atp5mc1-207 | 17 | 48892767 | 48895868 | + | lnc_RNA | retained_intron |
| 340919 | enst00000393366 | sg00000159199 | atp5mc1-202 | 17 | 48892787 | 48895871 | + | mRNA | protein_coding |
| 340929 | enst00000503641 | sg00000159199 | atp5mc1-204 | 17 | 48892797 | 48895871 | + | mRNA | protein_coding |
| 340934 | enst00000514808 | sg00000159199 | atp5mc1-209 | 17 | 48892802 | 48895349 | + | mRNA | protein_coding |
| 340949 | enst00000506855 | sg00000159199 | atp5mc1-206 | 17 | 48892817 | 48895871 | + | mRNA | protein_coding |
| 340986 | enst00000513781 | sg00000159199 | atp5mc1-208 | 17 | 48892854 | 48895861 | + | lnc_RNA | processed_transcript |
| 341445 | enst00000504591 | sg00000159199 | atp5mc1-205 | 17 | 48893313 | 48895334 | + | mRNA | protein_coding |
| 342299 | enst00000502964 | sg00000159199 | atp5mc1-203 | 17 | 48894167 | 48895871 | + | lnc_RNA | retained_intron |
| 342993 | enst00000515060 | sg00000159199 | atp5mc1-210 | 17 | 48894861 | 48895871 | + | lnc_RNA | processed_transcript |
| 347263 | enst00000603088 | sg00000270781 | ac091133.7-201 | 17 | 48899131 | 48899748 | + | pseudogenic_transcript | processed_pseudogene |
| -353515 | enst00000384576 | sg00000207306 | rnu6-1152p-201 | 17 | 48196680 | 48196786 | - | snRNA | snrna |
| 356539 | enst00000360943 | sg00000159202 | ube2z-201 | 17 | 48908407 | 48929056 | + | mRNA | protein_coding |
| 356605 | enst00000508468 | sg00000159202 | ube2z-205 | 17 | 48908473 | 48921272 | + | mRNA | protein_coding |
| 356848 | enst00000506498 | sg00000159202 | ube2z-204 | 17 | 48908716 | 48927103 | + | mRNA | nonsense_mediated_decay |
| 357115 | enst00000508743 | sg00000248278 | sumo2p17-202 | 17 | 48874860 | 48908983 | - | lnc_RNA | processed_transcript |
| 358480 | enst00000511373 | sg00000159202 | ube2z-206 | 17 | 48910348 | 48916123 | + | mRNA | protein_coding |
| 358822 | enst00000504684 | sg00000159202 | ube2z-202 | 17 | 48910690 | 48927054 | + | mRNA | nonsense_mediated_decay |
| 359311 | enst00000513342 | sg00000159202 | ube2z-207 | 17 | 48911179 | 48929054 | + | lnc_RNA | retained_intron |
| 363852 | enst00000506271 | sg00000159202 | ube2z-203 | 17 | 48915720 | 48927155 | + | lnc_RNA | retained_intron |
| -364363 | enst00000582246 | sg00000263787 | skap1-as1-201 | 17 | 48185938 | 48204529 | + | lnc_RNA | lncrna |
| -365122 | enst00000579336 | sg00000141293 | skap1-202 | 17 | 48180092 | 48185179 | - | mRNA | protein_coding |
| 369334 | enst00000514948 | sg00000159202 | ube2z-208 | 17 | 48921202 | 48923097 | + | mRNA | protein_coding |
| 379923 | enst00000435491 | sg00000230532 | ac091133.1-201 | 17 | 48931791 | 48937100 | + | lnc_RNA | lncrna |
| 381450 | enst00000504000 | sg00000159210 | snf8-203 | 17 | 48930390 | 48933318 | - | lnc_RNA | retained_intron |
| 381723 | enst00000515572 | sg00000159210 | snf8-215 | 17 | 48930388 | 48933591 | - | lnc_RNA | retained_intron |
| 385186 | enst00000509989 | sg00000159210 | snf8-206 | 17 | 48930426 | 48937054 | - | mRNA | nonsense_mediated_decay |
| 385239 | enst00000506104 | sg00000159210 | snf8-204 | 17 | 48936041 | 48937107 | - | lnc_RNA | retained_intron |
| 385250 | enst00000514089 | sg00000159210 | snf8-212 | 17 | 48930381 | 48937118 | - | lnc_RNA | processed_transcript |
| 385371 | enst00000511214 | sg00000159210 | snf8-210 | 17 | 48936034 | 48937239 | - | lnc_RNA | retained_intron |
| -387631 | enst00000579476 | sg00000141293 | skap1-203 | 17 | 48133446 | 48162670 | - | lnc_RNA | retained_intron |
| 392271 | enst00000515174 | sg00000159210 | snf8-214 | 17 | 48936656 | 48944139 | - | lnc_RNA | retained_intron |
| 392840 | enst00000512243 | sg00000159210 | snf8-211 | 17 | 48935703 | 48944708 | - | lnc_RNA | retained_intron |
| 392865 | enst00000509995 | sg00000159210 | snf8-207 | 17 | 48930371 | 48944733 | - | mRNA | nonsense_mediated_decay |
| 392879 | enst00000507302 | sg00000159210 | snf8-205 | 17 | 48931643 | 48944747 | - | mRNA | nonsense_mediated_decay |
| 392938 | enst00000510195 | sg00000159210 | snf8-208 | 17 | 48936996 | 48944806 | - | lnc_RNA | retained_intron |
| 392938 | enst00000510558 | sg00000159210 | snf8-209 | 17 | 48930371 | 48944806 | - | mRNA | nonsense_mediated_decay |
| 392942 | enst00000290330 | sg00000159210 | snf8-201 | 17 | 48930374 | 48944810 | - | mRNA | protein_coding |
| 392943 | enst00000573795 | sg00000159210 | snf8-216 | 17 | 48930429 | 48944811 | - | mRNA | nonsense_mediated_decay |
| 392957 | enst00000576353 | sg00000159210 | snf8-217 | 17 | 48930504 | 48944825 | - | mRNA | nonsense_mediated_decay |
| 392963 | enst00000514929 | sg00000159210 | snf8-213 | 17 | 48931643 | 48944831 | - | mRNA | nonsense_mediated_decay |
| 392974 | enst00000502492 | sg00000159210 | snf8-202 | 17 | 48929316 | 48944842 | - | mRNA | protein_coding |
| -393790 | enst00000408812 | sg00000221739 | mir1203-201 | 17 | 48156427 | 48156511 | - | miRNA | mirna |
| 397652 | enst00000364033 | sg00000200903 | rnu1-42p-201 | 17 | 48949361 | 48949520 | - | snRNA | snrna |
| 404885 | enst00000459483 | sg00000238804 | ac091133.2-201 | 17 | 48956650 | 48956753 | - | snoRNA | snorna |
| -412967 | enst00000583844 | sg00000141293 | skap1-206 | 17 | 48133446 | 48137334 | - | mRNA | nonsense_mediated_decay |
| 416728 | enst00000357424 | sg00000159224 | gip-201 | 17 | 48958554 | 48968596 | - | mRNA | protein_coding |
| -437735 | enst00000577310 | sg00000002919 | snx11-204 | 17 | 48112566 | 48113563 | + | lnc_RNA | retained_intron |
| -438352 | enst00000582481 | sg00000002919 | snx11-211 | 17 | 48111949 | 48119179 | + | mRNA | protein_coding |
| -442407 | enst00000584335 | sg00000002919 | snx11-213 | 17 | 48107894 | 48121458 | + | mRNA | protein_coding |
| -442513 | enst00000582104 | sg00000002919 | snx11-210 | 17 | 48107788 | 48121887 | + | mRNA | protein_coding |
| -442698 | enst00000583320 | sg00000002919 | snx11-212 | 17 | 48107603 | 48121288 | + | mRNA | nonsense_mediated_decay |
| -442716 | enst00000359238 | sg00000002919 | snx11-201 | 17 | 48107585 | 48122743 | + | mRNA | protein_coding |
| -442725 | enst00000581705 | sg00000002919 | snx11-209 | 17 | 48107576 | 48121886 | + | mRNA | nonsense_mediated_decay |
| -442741 | enst00000580875 | sg00000002919 | snx11-207 | 17 | 48107560 | 48112455 | + | lnc_RNA | retained_intron |
| -442743 | enst00000393405 | sg00000002919 | snx11-202 | 17 | 48107558 | 48123074 | + | mRNA | protein_coding |
| -442752 | enst00000578861 | sg00000002919 | snx11-205 | 17 | 48107549 | 48119008 | + | lnc_RNA | processed_transcript |
| -442752 | enst00000580219 | sg00000002919 | snx11-206 | 17 | 48107549 | 48121808 | + | mRNA | protein_coding |
| -442752 | enst00000452859 | sg00000002919 | snx11-203 | 17 | 48107549 | 48122135 | + | mRNA | protein_coding |
| 445517 | enst00000290341 | sg00000159217 | igf2bp1-201 | 17 | 48997385 | 49056145 | + | mRNA | protein_coding |
| 445618 | enst00000510023 | sg00000159217 | igf2bp1-205 | 17 | 48997486 | 49004858 | + | lnc_RNA | processed_transcript |
| 445624 | enst00000505903 | sg00000250838 | ac091133.3-201 | 17 | 48995266 | 48997492 | - | lnc_RNA | lncrna |
| 445878 | enst00000431824 | sg00000159217 | igf2bp1-202 | 17 | 48997746 | 49049444 | + | mRNA | protein_coding |
| 445895 | enst00000515586 | sg00000159217 | igf2bp1-206 | 17 | 48997763 | 49036933 | + | lnc_RNA | processed_transcript |
| -446944 | enst00000581298 | sg00000002919 | snx11-208 | 17 | 48103357 | 48119164 | + | mRNA | protein_coding |
| -448823 | enst00000225603 | sg00000108468 | cbx1-201 | 17 | 48070059 | 48101478 | - | mRNA | protein_coding |
| -448922 | enst00000581003 | sg00000108468 | cbx1-206 | 17 | 48071472 | 48101379 | - | mRNA | protein_coding |
| -448999 | enst00000402583 | sg00000108468 | cbx1-203 | 17 | 48071499 | 48101302 | - | mRNA | protein_coding |
| -449014 | enst00000495350 | sg00000108468 | cbx1-205 | 17 | 48074926 | 48101287 | - | mRNA | protein_coding |
| -449103 | enst00000393408 | sg00000108468 | cbx1-202 | 17 | 48070052 | 48101198 | - | mRNA | protein_coding |
| -449719 | enst00000444685 | sg00000108468 | cbx1-204 | 17 | 48075089 | 48100582 | - | mRNA | protein_coding |
| -461517 | enst00000384227 | sg00000206954 | rnu6-1201p-201 | 17 | 48088678 | 48088784 | - | snRNA | snrna |
| 461857 | enst00000504865 | sg00000251461 | ac091133.4-201 | 17 | 49004731 | 49013725 | - | lnc_RNA | lncrna |
| 462049 | enst00000499130 | sg00000159217 | igf2bp1-203 | 17 | 49013917 | 49036833 | + | lnc_RNA | processed_transcript |
| 466193 | enst00000537819 | sg00000255851 | ac091133.6-201 | 17 | 49017793 | 49018061 | - | ncRNA | misc_rna |
| 474524 | enst00000505562 | sg00000159217 | igf2bp1-204 | 17 | 49026392 | 49038438 | + | lnc_RNA | retained_intron |
| -483008 | enst00000614061 | sg00000278765 | ac004477.3-201 | 17 | 48066704 | 48067293 | - | lnc_RNA | lncrna |
| 484484 | enst00000516827 | sg00000252636 | rnu6-826p-201 | 17 | 49036352 | 49036455 | + | snRNA | snrna |
| 485254 | enst00000511142 | sg00000251550 | ac091133.5-201 | 17 | 49037122 | 49037429 | + | pseudogenic_transcript | processed_pseudogene |
| -489632 | enst00000583349 | sg00000266341 | ac004477.2-201 | 17 | 48060383 | 48060669 | - | lnc_RNA | lncrna |
| -491424 | enst00000581319 | sg00000082641 | nfe2l1-212 | 17 | 48058877 | 48060050 | + | mRNA | protein_coding |
| -494349 | enst00000580037 | sg00000082641 | nfe2l1-210 | 17 | 48055952 | 48058416 | + | mRNA | protein_coding |
| -495381 | enst00000577431 | sg00000082641 | nfe2l1-206 | 17 | 48054920 | 48058307 | + | mRNA | protein_coding |
| -495591 | enst00000536222 | sg00000082641 | nfe2l1-204 | 17 | 48054710 | 48059653 | + | mRNA | protein_coding |
| -495609 | enst00000583378 | sg00000082641 | nfe2l1-218 | 17 | 48054692 | 48059936 | + | mRNA | protein_coding |
| -495626 | enst00000582155 | sg00000082641 | nfe2l1-214 | 17 | 48054675 | 48059833 | + | mRNA | protein_coding |
| -495714 | enst00000580050 | sg00000082641 | nfe2l1-211 | 17 | 48054587 | 48056588 | + | mRNA | protein_coding |
| -495751 | enst00000584634 | sg00000082641 | nfe2l1-220 | 17 | 48054550 | 48058331 | + | mRNA | protein_coding |
| -495820 | enst00000577411 | sg00000082641 | nfe2l1-205 | 17 | 48054481 | 48058461 | + | mRNA | protein_coding |
| -495973 | enst00000583210 | sg00000082641 | nfe2l1-217 | 17 | 48054328 | 48058342 | + | mRNA | protein_coding |
| -495973 | enst00000579537 | sg00000082641 | nfe2l1-208 | 17 | 48054328 | 48056444 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc