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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #71 | 3 | 194396715 | 194398455 | 1740 | 3 | 56 | 8.97525e-20 | 1.25717e-17 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000401815 | sg00000178732 | gp5-201 | 3 | 194394821 | 194398354 | - | mRNA | protein_coding |
| 14608 | enst00000461660 | sg00000133657 | atp13a3-206 | 3 | 194403465 | 194413063 | - | lnc_RNA | retained_intron |
| 21929 | enst00000497567 | sg00000133657 | atp13a3-210 | 3 | 194413814 | 194420384 | - | lnc_RNA | retained_intron |
| -26972 | enst00000347624 | sg00000172061 | lrrc15-201 | 3 | 194355247 | 194369743 | - | mRNA | protein_coding |
| -26984 | enst00000428839 | sg00000172061 | lrrc15-202 | 3 | 194357927 | 194369731 | - | mRNA | protein_coding |
| 32726 | enst00000429136 | sg00000133657 | atp13a3-202 | 3 | 194403208 | 194431181 | - | mRNA | protein_coding |
| 33567 | enst00000484023 | sg00000133657 | atp13a3-207 | 3 | 194430930 | 194432022 | - | lnc_RNA | retained_intron |
| -45387 | enst00000323830 | sg00000178772 | cpn2-201 | 3 | 194339768 | 194351328 | - | mRNA | protein_coding |
| -45397 | enst00000429275 | sg00000178772 | cpn2-202 | 3 | 194340772 | 194351318 | - | mRNA | protein_coding |
| 53586 | enst00000619199 | sg00000133657 | atp13a3-211 | 3 | 194402674 | 194452041 | - | mRNA | protein_coding |
| 54602 | enst00000645621 | sg00000133657 | atp13a3-215 | 3 | 194402723 | 194453057 | - | lnc_RNA | retained_intron |
| 55346 | enst00000485194 | sg00000133657 | atp13a3-208 | 3 | 194447096 | 194453801 | - | lnc_RNA | retained_intron |
| 61417 | enst00000492983 | sg00000133657 | atp13a3-209 | 3 | 194459032 | 194459872 | - | lnc_RNA | retained_intron |
| 61463 | enst00000645319 | sg00000133657 | atp13a3-213 | 3 | 194402689 | 194459918 | - | mRNA | protein_coding |
| 63757 | enst00000642744 | sg00000133657 | atp13a3-212 | 3 | 194402677 | 194462212 | - | mRNA | protein_coding |
| 69784 | enst00000446356 | sg00000133657 | atp13a3-204 | 3 | 194460743 | 194468239 | - | mRNA | protein_coding |
| 69784 | enst00000256031 | sg00000133657 | atp13a3-201 | 3 | 194402680 | 194468239 | - | mRNA | protein_coding |
| 73468 | enst00000605225 | sg00000271483 | ac108676.2-201 | 3 | 194471923 | 194472085 | + | pseudogenic_transcript | processed_pseudogene |
| -73844 | enst00000660996 | sg00000214145 | linc00887-207 | 3 | 194301199 | 194322871 | - | lnc_RNA | lncrna |
| -73859 | enst00000654752 | sg00000214145 | linc00887-205 | 3 | 194301199 | 194322856 | - | lnc_RNA | lncrna |
| -73874 | enst00000670959 | sg00000214145 | linc00887-210 | 3 | 194301199 | 194322841 | - | lnc_RNA | lncrna |
| -73874 | enst00000670716 | sg00000214145 | linc00887-209 | 3 | 194296191 | 194322841 | - | lnc_RNA | lncrna |
| -83909 | enst00000456816 | sg00000214145 | linc00887-204 | 3 | 194296465 | 194312806 | - | lnc_RNA | lncrna |
| -83912 | enst00000429578 | sg00000214145 | linc00887-203 | 3 | 194299635 | 194312803 | - | lnc_RNA | lncrna |
| -83915 | enst00000414120 | sg00000214145 | linc00887-202 | 3 | 194301199 | 194312800 | - | lnc_RNA | lncrna |
| 88204 | enst00000457986 | sg00000133657 | atp13a3-205 | 3 | 194459889 | 194486659 | - | mRNA | protein_coding |
| 88547 | enst00000645538 | sg00000133657 | atp13a3-214 | 3 | 194402674 | 194487002 | - | mRNA | protein_coding |
| 88685 | enst00000665891 | sg00000233058 | linc00884-208 | 3 | 194487140 | 194510647 | + | lnc_RNA | lncrna |
| 88685 | enst00000661941 | sg00000233058 | linc00884-206 | 3 | 194487140 | 194513861 | + | lnc_RNA | lncrna |
| 88691 | enst00000662856 | sg00000233058 | linc00884-207 | 3 | 194487146 | 194521154 | + | lnc_RNA | lncrna |
| 88691 | enst00000671306 | sg00000233058 | linc00884-210 | 3 | 194487146 | 194500150 | + | lnc_RNA | lncrna |
| 88691 | enst00000437597 | sg00000233058 | linc00884-201 | 3 | 194487146 | 194500180 | + | lnc_RNA | lncrna |
| 88999 | enst00000448892 | sg00000233058 | linc00884-202 | 3 | 194487454 | 194521156 | + | lnc_RNA | lncrna |
| 89001 | enst00000670064 | sg00000233058 | linc00884-209 | 3 | 194487456 | 194507898 | + | lnc_RNA | lncrna |
| 89163 | enst00000656823 | sg00000233058 | linc00884-204 | 3 | 194487618 | 194510554 | + | lnc_RNA | lncrna |
| 89219 | enst00000653684 | sg00000233058 | linc00884-203 | 3 | 194487674 | 194489848 | + | lnc_RNA | lncrna |
| 89399 | enst00000657621 | sg00000233058 | linc00884-205 | 3 | 194487854 | 194507538 | + | lnc_RNA | lncrna |
| -90684 | enst00000397644 | sg00000214145 | linc00887-201 | 3 | 194301446 | 194306031 | - | lnc_RNA | lncrna |
| -94676 | enst00000659219 | sg00000214145 | linc00887-206 | 3 | 194296458 | 194302039 | - | lnc_RNA | lncrna |
| -96386 | enst00000658886 | sg00000286317 | ac117469.1-201 | 3 | 194300329 | 194302048 | + | lnc_RNA | lncrna |
| -99213 | enst00000669998 | sg00000214145 | linc00887-208 | 3 | 194296458 | 194297502 | - | lnc_RNA | lncrna |
| 99909 | enst00000439040 | sg00000133657 | atp13a3-203 | 3 | 194402672 | 194498364 | - | mRNA | protein_coding |
| 103048 | enst00000455557 | sg00000244675 | ac108676.1-201 | 3 | 194496317 | 194501503 | - | lnc_RNA | lncrna |
| -119935 | enst00000653696 | sg00000228271 | linc02048-202 | 3 | 194276780 | 194278159 | + | lnc_RNA | lncrna |
| -120033 | enst00000440556 | sg00000228271 | linc02048-201 | 3 | 194276682 | 194287368 | + | lnc_RNA | lncrna |
| 135128 | enst00000516244 | sg00000252053 | rnu6-1101p-201 | 3 | 194533503 | 194533583 | - | snRNA | snrna |
| -146512 | enst00000667386 | sg00000225742 | linc02036-211 | 3 | 194202392 | 194250203 | - | lnc_RNA | lncrna |
| -149067 | enst00000455821 | sg00000238097 | linc02037-201 | 3 | 194247648 | 194257772 | + | lnc_RNA | lncrna |
| -149069 | enst00000669096 | sg00000238097 | linc02037-203 | 3 | 194247646 | 194260720 | + | lnc_RNA | lncrna |
| -149077 | enst00000664340 | sg00000238097 | linc02037-202 | 3 | 194247638 | 194258816 | + | lnc_RNA | lncrna |
| 165546 | enst00000440847 | sg00000232873 | rpl23ap93-201 | 3 | 194562978 | 194564001 | - | pseudogenic_transcript | processed_pseudogene |
| -170356 | enst00000662346 | sg00000225742 | linc02036-207 | 3 | 194203015 | 194226359 | - | lnc_RNA | lncrna |
| -170358 | enst00000657249 | sg00000225742 | linc02036-205 | 3 | 194203118 | 194226357 | - | lnc_RNA | lncrna |
| -170365 | enst00000658228 | sg00000225742 | linc02036-206 | 3 | 194203018 | 194226350 | - | lnc_RNA | lncrna |
| -183907 | enst00000662552 | sg00000225742 | linc02036-208 | 3 | 194203016 | 194212808 | - | lnc_RNA | lncrna |
| -183935 | enst00000653788 | sg00000225742 | linc02036-203 | 3 | 194203025 | 194212780 | - | lnc_RNA | lncrna |
| -183985 | enst00000664894 | sg00000225742 | linc02036-209 | 3 | 194203019 | 194212730 | - | lnc_RNA | lncrna |
| 185549 | enst00000666676 | sg00000231770 | tmem44-as1-204 | 3 | 194584004 | 194584908 | + | lnc_RNA | lncrna |
| 185556 | enst00000453671 | sg00000231770 | tmem44-as1-203 | 3 | 194584011 | 194590260 | + | lnc_RNA | lncrna |
| 185559 | enst00000447982 | sg00000231770 | tmem44-as1-202 | 3 | 194584014 | 194590249 | + | lnc_RNA | lncrna |
| 185844 | enst00000419571 | sg00000231770 | tmem44-as1-201 | 3 | 194584299 | 194590249 | + | lnc_RNA | lncrna |
| -190093 | enst00000432908 | sg00000225742 | linc02036-202 | 3 | 194203018 | 194206622 | - | lnc_RNA | lncrna |
| -190918 | enst00000415869 | sg00000225742 | linc02036-201 | 3 | 194203018 | 194205797 | - | lnc_RNA | lncrna |
| -190978 | enst00000654010 | sg00000225742 | linc02036-204 | 3 | 194203016 | 194205737 | - | lnc_RNA | lncrna |
| 191491 | enst00000476750 | sg00000145014 | tmem44-212 | 3 | 194587873 | 194589946 | - | lnc_RNA | processed_transcript |
| -192512 | enst00000666638 | sg00000225742 | linc02036-210 | 3 | 194203019 | 194204203 | - | lnc_RNA | lncrna |
| 212523 | enst00000467284 | sg00000145014 | tmem44-210 | 3 | 194596869 | 194610978 | - | lnc_RNA | processed_transcript |
| 217221 | enst00000429560 | sg00000145014 | tmem44-206 | 3 | 194588529 | 194615676 | - | mRNA | protein_coding |
| 218700 | enst00000432352 | sg00000145014 | tmem44-208 | 3 | 194587678 | 194617155 | - | mRNA | protein_coding |
| 219190 | enst00000477651 | sg00000145014 | tmem44-213 | 3 | 194587681 | 194617645 | - | lnc_RNA | retained_intron |
| 227496 | enst00000452358 | sg00000145014 | tmem44-209 | 3 | 194588469 | 194625951 | - | mRNA | protein_coding |
| 234468 | enst00000447139 | sg00000229334 | ac046143.1-201 | 3 | 194632923 | 194645401 | + | lnc_RNA | lncrna |
| 234826 | enst00000381975 | sg00000145014 | tmem44-203 | 3 | 194587681 | 194633281 | - | mRNA | protein_coding |
| 234870 | enst00000473092 | sg00000145014 | tmem44-211 | 3 | 194588448 | 194633325 | - | mRNA | protein_coding |
| 234870 | enst00000347147 | sg00000145014 | tmem44-202 | 3 | 194587681 | 194633325 | - | mRNA | protein_coding |
| 234894 | enst00000430601 | sg00000145014 | tmem44-207 | 3 | 194623224 | 194633349 | - | mRNA | nonsense_mediated_decay |
| 234966 | enst00000392432 | sg00000145014 | tmem44-204 | 3 | 194587673 | 194633421 | - | mRNA | protein_coding |
| 235189 | enst00000419280 | sg00000145014 | tmem44-205 | 3 | 194593041 | 194633644 | - | mRNA | nonsense_mediated_decay |
| 235190 | enst00000494894 | sg00000145014 | tmem44-214 | 3 | 194610926 | 194633645 | - | lnc_RNA | processed_transcript |
| 235234 | enst00000330115 | sg00000145014 | tmem44-201 | 3 | 194622548 | 194633689 | - | mRNA | protein_coding |
| 239209 | enst00000609789 | sg00000272707 | ac046143.2-201 | 3 | 194637505 | 194637664 | - | lnc_RNA | lncrna |
| 247989 | enst00000475763 | sg00000041802 | lsg1-207 | 3 | 194642113 | 194646444 | - | lnc_RNA | retained_intron |
| 250564 | enst00000460584 | sg00000041802 | lsg1-204 | 3 | 194642173 | 194649019 | - | lnc_RNA | retained_intron |
| -251041 | enst00000487718 | sg00000242201 | rn7sl215p-201 | 3 | 194145674 | 194145971 | + | ncRNA | misc_rna |
| 253142 | enst00000466391 | sg00000041802 | lsg1-206 | 3 | 194650717 | 194651597 | - | lnc_RNA | retained_intron |
| 254358 | enst00000461343 | sg00000041802 | lsg1-205 | 3 | 194650784 | 194652813 | - | lnc_RNA | retained_intron |
| 254647 | enst00000437613 | sg00000041802 | lsg1-203 | 3 | 194644666 | 194653102 | - | mRNA | protein_coding |
| -260567 | enst00000232424 | sg00000114315 | hes1-201 | 3 | 194136148 | 194138732 | + | mRNA | protein_coding |
| -260567 | enst00000476918 | sg00000114315 | hes1-202 | 3 | 194136148 | 194137284 | + | lnc_RNA | retained_intron |
| -265514 | enst00000418353 | sg00000232874 | ac080129.2-201 | 3 | 194130616 | 194131201 | - | lnc_RNA | lncrna |
| 273707 | enst00000427461 | sg00000041802 | lsg1-202 | 3 | 194659106 | 194672162 | - | mRNA | nonsense_mediated_decay |
| 273736 | enst00000265245 | sg00000041802 | lsg1-201 | 3 | 194640791 | 194672191 | - | mRNA | protein_coding |
| 274008 | enst00000480853 | sg00000041802 | lsg1-208 | 3 | 194670063 | 194672463 | - | lnc_RNA | processed_transcript |
| 287428 | enst00000329759 | sg00000185112 | fam43a-201 | 3 | 194685883 | 194689037 | + | mRNA | protein_coding |
| 304212 | enst00000657492 | sg00000233987 | ac106706.1-202 | 3 | 194702667 | 194727666 | + | lnc_RNA | lncrna |
| -305154 | enst00000457815 | sg00000229964 | ac080129.1-201 | 3 | 194091561 | 194109174 | + | lnc_RNA | lncrna |
| 307093 | enst00000439479 | sg00000233987 | ac106706.1-201 | 3 | 194705548 | 194706964 | + | lnc_RNA | lncrna |
| 309638 | enst00000670880 | sg00000237222 | linc01968-233 | 3 | 194708093 | 194727666 | + | lnc_RNA | lncrna |
| 309957 | enst00000654487 | sg00000237222 | linc01968-208 | 3 | 194708412 | 194729388 | + | lnc_RNA | lncrna |
| 309966 | enst00000423318 | sg00000237222 | linc01968-202 | 3 | 194708421 | 194782168 | + | lnc_RNA | lncrna |
| 309968 | enst00000664371 | sg00000237222 | linc01968-219 | 3 | 194708423 | 194727668 | + | lnc_RNA | lncrna |
| 309974 | enst00000662913 | sg00000233987 | ac106706.1-204 | 3 | 194708429 | 194718754 | + | lnc_RNA | lncrna |
| 309979 | enst00000666967 | sg00000233987 | ac106706.1-207 | 3 | 194708434 | 194727661 | + | lnc_RNA | lncrna |
| 309979 | enst00000653661 | sg00000233987 | ac106706.1-209 | 3 | 194708434 | 194727666 | + | lnc_RNA | lncrna |
| 309987 | enst00000658471 | sg00000237222 | linc01968-210 | 3 | 194708442 | 194749955 | + | lnc_RNA | lncrna |
| 309987 | enst00000669157 | sg00000237222 | linc01968-225 | 3 | 194708442 | 194819772 | + | lnc_RNA | lncrna |
| 309987 | enst00000660286 | sg00000237222 | linc01968-214 | 3 | 194708442 | 194727659 | + | lnc_RNA | lncrna |
| 309987 | enst00000660104 | sg00000237222 | linc01968-213 | 3 | 194708442 | 194718484 | + | lnc_RNA | lncrna |
| 309987 | enst00000668747 | sg00000237222 | linc01968-223 | 3 | 194708442 | 194819772 | + | lnc_RNA | lncrna |
| 309988 | enst00000667646 | sg00000237222 | linc01968-222 | 3 | 194708443 | 194826008 | + | lnc_RNA | lncrna |
| 309988 | enst00000664076 | sg00000233987 | ac106706.1-208 | 3 | 194708443 | 194727666 | + | lnc_RNA | lncrna |
| 309991 | enst00000658821 | sg00000237222 | linc01968-212 | 3 | 194708446 | 194727666 | + | lnc_RNA | lncrna |
| 309991 | enst00000666554 | sg00000237222 | linc01968-221 | 3 | 194708446 | 194718756 | + | lnc_RNA | lncrna |
| 309991 | enst00000655373 | sg00000233987 | ac106706.1-206 | 3 | 194708446 | 194727675 | + | lnc_RNA | lncrna |
| 309991 | enst00000669492 | sg00000233987 | ac106706.1-205 | 3 | 194708446 | 194727664 | + | lnc_RNA | lncrna |
| 309998 | enst00000670468 | sg00000237222 | linc01968-228 | 3 | 194708453 | 194729393 | + | lnc_RNA | lncrna |
| 310007 | enst00000669350 | sg00000237222 | linc01968-227 | 3 | 194708462 | 194718484 | + | lnc_RNA | lncrna |
| 310008 | enst00000670673 | sg00000237222 | linc01968-231 | 3 | 194708463 | 194727666 | + | lnc_RNA | lncrna |
| 310011 | enst00000658495 | sg00000237222 | linc01968-211 | 3 | 194708466 | 194718757 | + | lnc_RNA | lncrna |
| 310011 | enst00000669158 | sg00000237222 | linc01968-226 | 3 | 194708466 | 194727664 | + | lnc_RNA | lncrna |
| 310017 | enst00000666540 | sg00000237222 | linc01968-220 | 3 | 194708472 | 194727658 | + | lnc_RNA | lncrna |
| 310017 | enst00000664066 | sg00000237222 | linc01968-218 | 3 | 194708472 | 194749955 | + | lnc_RNA | lncrna |
| 310017 | enst00000654504 | sg00000233987 | ac106706.1-203 | 3 | 194708472 | 194727663 | + | lnc_RNA | lncrna |
| 310017 | enst00000669045 | sg00000237222 | linc01968-224 | 3 | 194708472 | 194729393 | + | lnc_RNA | lncrna |
| 310017 | enst00000653914 | sg00000237222 | linc01968-207 | 3 | 194708472 | 194727664 | + | lnc_RNA | lncrna |
| 310022 | enst00000670809 | sg00000237222 | linc01968-232 | 3 | 194708477 | 194750371 | + | lnc_RNA | lncrna |
| 310585 | enst00000454508 | sg00000237222 | linc01968-203 | 3 | 194709040 | 194710189 | + | lnc_RNA | lncrna |
| 310940 | enst00000670579 | sg00000287073 | ac106706.2-201 | 3 | 194708010 | 194709395 | - | lnc_RNA | lncrna |
| -325690 | enst00000657966 | sg00000230102 | linc02028-237 | 3 | 194009449 | 194071025 | - | lnc_RNA | lncrna |
| -325708 | enst00000653573 | sg00000230102 | linc02028-232 | 3 | 194014690 | 194071007 | - | lnc_RNA | lncrna |
| -325745 | enst00000458224 | sg00000230102 | linc02028-205 | 3 | 194005456 | 194070970 | - | lnc_RNA | lncrna |
| -325763 | enst00000449350 | sg00000230102 | linc02028-204 | 3 | 194009458 | 194070952 | - | lnc_RNA | lncrna |
| -326476 | enst00000615240 | sg00000276407 | ac024559.2-203 | 3 | 194070239 | 194080443 | + | lnc_RNA | lncrna |
| -326499 | enst00000655827 | sg00000276407 | ac024559.2-202 | 3 | 194070216 | 194086826 | + | lnc_RNA | lncrna |
| -326612 | enst00000615650 | sg00000276407 | ac024559.2-201 | 3 | 194070103 | 194078468 | + | lnc_RNA | lncrna |
| -326895 | enst00000663517 | sg00000230102 | linc02028-246 | 3 | 194005488 | 194069820 | - | lnc_RNA | lncrna |
| -327076 | enst00000654490 | sg00000230102 | linc02028-233 | 3 | 194005308 | 194069639 | - | lnc_RNA | lncrna |
| -327133 | enst00000626476 | sg00000230102 | linc02028-225 | 3 | 194005289 | 194069582 | - | lnc_RNA | lncrna |
| -327138 | enst00000670206 | sg00000230102 | linc02028-257 | 3 | 194042909 | 194069577 | - | lnc_RNA | lncrna |
| -327157 | enst00000668599 | sg00000230102 | linc02028-252 | 3 | 194009954 | 194069558 | - | lnc_RNA | lncrna |
| -327162 | enst00000593326 | sg00000230102 | linc02028-206 | 3 | 194042910 | 194069553 | - | lnc_RNA | lncrna |
| -327162 | enst00000658493 | sg00000230102 | linc02028-238 | 3 | 194005309 | 194069553 | - | lnc_RNA | lncrna |
| -327186 | enst00000432154 | sg00000230102 | linc02028-202 | 3 | 194048920 | 194069529 | - | lnc_RNA | lncrna |
| -327260 | enst00000667864 | sg00000230102 | linc02028-251 | 3 | 194005488 | 194069455 | - | lnc_RNA | lncrna |
| -327300 | enst00000629693 | sg00000230102 | linc02028-228 | 3 | 194055548 | 194069415 | - | lnc_RNA | lncrna |
| -331287 | enst00000609933 | sg00000230102 | linc02028-218 | 3 | 194055479 | 194065428 | - | lnc_RNA | lncrna |
| -334967 | enst00000609304 | sg00000230102 | linc02028-217 | 3 | 194055479 | 194061748 | - | lnc_RNA | lncrna |
| -338165 | enst00000625668 | sg00000230102 | linc02028-223 | 3 | 194015629 | 194058550 | - | lnc_RNA | lncrna |
| -338197 | enst00000599735 | sg00000230102 | linc02028-213 | 3 | 194055479 | 194058518 | - | lnc_RNA | retained_intron |
| -338221 | enst00000598535 | sg00000230102 | linc02028-210 | 3 | 194042911 | 194058494 | - | lnc_RNA | lncrna |
| -338221 | enst00000660199 | sg00000230102 | linc02028-241 | 3 | 194009952 | 194058494 | - | lnc_RNA | lncrna |
| -338222 | enst00000610423 | sg00000230102 | linc02028-219 | 3 | 194055479 | 194058493 | - | lnc_RNA | lncrna |
| -338229 | enst00000609015 | sg00000230102 | linc02028-216 | 3 | 194043499 | 194058486 | - | lnc_RNA | lncrna |
| -338229 | enst00000669236 | sg00000230102 | linc02028-255 | 3 | 194009980 | 194058486 | - | lnc_RNA | lncrna |
| -338237 | enst00000668727 | sg00000230102 | linc02028-254 | 3 | 194009954 | 194058478 | - | lnc_RNA | lncrna |
| -338242 | enst00000666958 | sg00000230102 | linc02028-250 | 3 | 194009954 | 194058473 | - | lnc_RNA | lncrna |
| -338242 | enst00000625586 | sg00000230102 | linc02028-222 | 3 | 194055561 | 194058473 | - | lnc_RNA | lncrna |
| -338242 | enst00000601913 | sg00000230102 | linc02028-215 | 3 | 194043190 | 194058473 | - | lnc_RNA | lncrna |
| -338247 | enst00000627909 | sg00000230102 | linc02028-227 | 3 | 194055547 | 194058468 | - | lnc_RNA | lncrna |
| -338247 | enst00000625879 | sg00000230102 | linc02028-224 | 3 | 194055547 | 194058468 | - | lnc_RNA | lncrna |
| -338248 | enst00000443776 | sg00000230102 | linc02028-203 | 3 | 194005487 | 194058467 | - | lnc_RNA | lncrna |
| -338248 | enst00000656867 | sg00000230102 | linc02028-236 | 3 | 194009954 | 194058467 | - | lnc_RNA | lncrna |
| -338248 | enst00000654593 | sg00000230102 | linc02028-234 | 3 | 194009954 | 194058467 | - | lnc_RNA | lncrna |
| -338248 | enst00000630262 | sg00000230102 | linc02028-230 | 3 | 194055547 | 194058467 | - | lnc_RNA | lncrna |
| -338248 | enst00000660052 | sg00000230102 | linc02028-240 | 3 | 194015447 | 194058467 | - | lnc_RNA | lncrna |
| -338250 | enst00000659267 | sg00000230102 | linc02028-239 | 3 | 194009954 | 194058465 | - | lnc_RNA | lncrna |
| -338254 | enst00000622169 | sg00000230102 | linc02028-221 | 3 | 194005259 | 194058461 | - | lnc_RNA | lncrna |
| -338254 | enst00000660359 | sg00000230102 | linc02028-243 | 3 | 194048851 | 194058461 | - | lnc_RNA | lncrna |
| -338258 | enst00000630484 | sg00000230102 | linc02028-231 | 3 | 194055547 | 194058457 | - | lnc_RNA | lncrna |
| -338264 | enst00000669285 | sg00000230102 | linc02028-256 | 3 | 194028980 | 194058451 | - | lnc_RNA | lncrna |
| -338264 | enst00000620876 | sg00000230102 | linc02028-220 | 3 | 194055479 | 194058451 | - | lnc_RNA | lncrna |
| -338266 | enst00000597974 | sg00000230102 | linc02028-209 | 3 | 194055479 | 194058449 | - | lnc_RNA | lncrna |
| -338286 | enst00000665835 | sg00000230102 | linc02028-248 | 3 | 194036331 | 194058429 | - | lnc_RNA | lncrna |
| -338326 | enst00000601524 | sg00000230102 | linc02028-214 | 3 | 194055479 | 194058389 | - | lnc_RNA | retained_intron |
| -339036 | enst00000420947 | sg00000230102 | linc02028-201 | 3 | 194015443 | 194057679 | - | lnc_RNA | lncrna |
| -344270 | enst00000661206 | sg00000230102 | linc02028-244 | 3 | 194009954 | 194052445 | - | lnc_RNA | lncrna |
| -347373 | enst00000599441 | sg00000230102 | linc02028-212 | 3 | 194005437 | 194049342 | - | lnc_RNA | lncrna |
| -347373 | enst00000593559 | sg00000230102 | linc02028-207 | 3 | 194043165 | 194049342 | - | lnc_RNA | lncrna |
| -347374 | enst00000627894 | sg00000230102 | linc02028-226 | 3 | 194042913 | 194049341 | - | lnc_RNA | lncrna |
| -347375 | enst00000597775 | sg00000230102 | linc02028-208 | 3 | 194043163 | 194049340 | - | lnc_RNA | lncrna |
| -347382 | enst00000599153 | sg00000230102 | linc02028-211 | 3 | 194043697 | 194049333 | - | lnc_RNA | lncrna |
| -347437 | enst00000629795 | sg00000230102 | linc02028-229 | 3 | 194005488 | 194049278 | - | lnc_RNA | lncrna |
| -349518 | enst00000656099 | sg00000230102 | linc02028-235 | 3 | 194009449 | 194047197 | - | lnc_RNA | lncrna |
| -350060 | enst00000668675 | sg00000230102 | linc02028-253 | 3 | 194009954 | 194046655 | - | lnc_RNA | lncrna |
| 357134 | enst00000430515 | sg00000234805 | ac090505.1-201 | 3 | 194755589 | 194757422 | + | pseudogenic_transcript | processed_pseudogene |
| -369439 | enst00000665355 | sg00000230102 | linc02028-247 | 3 | 194009954 | 194027276 | - | lnc_RNA | lncrna |
| -369465 | enst00000662513 | sg00000230102 | linc02028-245 | 3 | 194005359 | 194027250 | - | lnc_RNA | lncrna |
| -369484 | enst00000666539 | sg00000230102 | linc02028-249 | 3 | 194005359 | 194027231 | - | lnc_RNA | lncrna |
| 370235 | enst00000653615 | sg00000237222 | linc01968-206 | 3 | 194768690 | 194801050 | + | lnc_RNA | lncrna |
| 370237 | enst00000653545 | sg00000237222 | linc01968-205 | 3 | 194768692 | 194780037 | + | lnc_RNA | lncrna |
| 370255 | enst00000670519 | sg00000237222 | linc01968-229 | 3 | 194768710 | 194821833 | + | lnc_RNA | lncrna |
| 370257 | enst00000422271 | sg00000230401 | linc01972-201 | 3 | 194765238 | 194768712 | - | lnc_RNA | lncrna |
| 370337 | enst00000662904 | sg00000237222 | linc01968-216 | 3 | 194768792 | 194802722 | + | lnc_RNA | lncrna |
| 370347 | enst00000670592 | sg00000237222 | linc01968-230 | 3 | 194768802 | 194779686 | + | lnc_RNA | lncrna |
| 370347 | enst00000658464 | sg00000237222 | linc01968-209 | 3 | 194768802 | 194780053 | + | lnc_RNA | lncrna |
| 370347 | enst00000663443 | sg00000237222 | linc01968-217 | 3 | 194768802 | 194819772 | + | lnc_RNA | lncrna |
| 370351 | enst00000455796 | sg00000237222 | linc01968-204 | 3 | 194768806 | 194779658 | + | lnc_RNA | lncrna |
| 370936 | enst00000671408 | sg00000237222 | linc01968-234 | 3 | 194769391 | 194780053 | + | lnc_RNA | lncrna |
| 370968 | enst00000662703 | sg00000237222 | linc01968-215 | 3 | 194769423 | 194779686 | + | lnc_RNA | lncrna |
| -376586 | enst00000660282 | sg00000230102 | linc02028-242 | 3 | 194009887 | 194020129 | - | lnc_RNA | lncrna |
| 381774 | enst00000415410 | sg00000237222 | linc01968-201 | 3 | 194780229 | 194781377 | + | lnc_RNA | lncrna |
| -392955 | enst00000667794 | sg00000214146 | linc02026-204 | 3 | 194001651 | 194003760 | - | lnc_RNA | lncrna |
| -393055 | enst00000665314 | sg00000214146 | linc02026-203 | 3 | 193987142 | 194003660 | - | lnc_RNA | lncrna |
| -393056 | enst00000397645 | sg00000214146 | linc02026-201 | 3 | 193957372 | 194003659 | - | lnc_RNA | lncrna |
| -393079 | enst00000414309 | sg00000214146 | linc02026-202 | 3 | 194001857 | 194003636 | - | lnc_RNA | lncrna |
| -402730 | enst00000411853 | sg00000224403 | dppa2p3-201 | 3 | 193993331 | 193993985 | - | pseudogenic_transcript | processed_pseudogene |
| -416101 | enst00000426616 | sg00000238043 | ac024559.1-201 | 3 | 193980614 | 194006098 | + | lnc_RNA | lncrna |
| 429435 | enst00000427064 | sg00000238031 | ac090505.2-201 | 3 | 194827890 | 194832592 | + | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc