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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #82 | 5 | 177366903 | 177367884 | 981 | 3 | 45 | 6.14481e-19 | 7.45246e-17 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000511890 | sg00000169220 | rgs14-209 | 5 | 177366943 | 177372298 | + | mRNA | protein_coding |
| 0 | enst00000514713 | sg00000169220 | rgs14-213 | 5 | 177366943 | 177369075 | + | lnc_RNA | retained_intron |
| 0 | enst00000503110 | sg00000169220 | rgs14-205 | 5 | 177367217 | 177368888 | + | lnc_RNA | processed_transcript |
| 0 | enst00000512000 | sg00000169220 | rgs14-210 | 5 | 177367302 | 177368016 | + | lnc_RNA | retained_intron |
| 0 | enst00000512490 | sg00000169220 | rgs14-211 | 5 | 177367303 | 177368804 | + | lnc_RNA | retained_intron |
| 0 | enst00000425155 | sg00000169220 | rgs14-202 | 5 | 177367314 | 177372596 | + | lnc_RNA | retained_intron |
| -475 | enst00000504631 | sg00000169220 | rgs14-206 | 5 | 177366428 | 177367557 | + | lnc_RNA | retained_intron |
| 2669 | enst00000502731 | sg00000169220 | rgs14-203 | 5 | 177370553 | 177371578 | + | lnc_RNA | retained_intron |
| 2937 | enst00000514102 | sg00000169220 | rgs14-212 | 5 | 177370821 | 177372292 | + | lnc_RNA | retained_intron |
| 3182 | enst00000509289 | sg00000169220 | rgs14-208 | 5 | 177371066 | 177371582 | + | lnc_RNA | retained_intron |
| 3223 | enst00000503044 | sg00000169220 | rgs14-204 | 5 | 177371107 | 177372143 | + | lnc_RNA | retained_intron |
| 3229 | enst00000506944 | sg00000169220 | rgs14-207 | 5 | 177371113 | 177372166 | + | lnc_RNA | processed_transcript |
| -8979 | enst00000408923 | sg00000169220 | rgs14-201 | 5 | 177357924 | 177372596 | + | mRNA | protein_coding |
| 11351 | enst00000504577 | sg00000131183 | slc34a1-202 | 5 | 177379235 | 177386290 | + | mRNA | protein_coding |
| -15235 | enst00000303127 | sg00000169223 | lman2-201 | 5 | 177331567 | 177351668 | - | mRNA | protein_coding |
| -15236 | enst00000506310 | sg00000169223 | lman2-205 | 5 | 177337435 | 177351667 | - | lnc_RNA | processed_transcript |
| -15244 | enst00000502560 | sg00000169223 | lman2-202 | 5 | 177334309 | 177351659 | - | mRNA | protein_coding |
| -15251 | enst00000514458 | sg00000169223 | lman2-207 | 5 | 177332202 | 177351652 | - | mRNA | protein_coding |
| -15256 | enst00000515209 | sg00000169223 | lman2-208 | 5 | 177332031 | 177351647 | - | mRNA | protein_coding |
| -15381 | enst00000513877 | sg00000169223 | lman2-206 | 5 | 177337138 | 177351522 | - | mRNA | protein_coding |
| 16550 | enst00000324417 | sg00000131183 | slc34a1-201 | 5 | 177384434 | 177398848 | + | mRNA | protein_coding |
| 16550 | enst00000512593 | sg00000131183 | slc34a1-204 | 5 | 177384434 | 177390513 | + | mRNA | protein_coding |
| 16567 | enst00000507685 | sg00000131183 | slc34a1-203 | 5 | 177384451 | 177397305 | + | lnc_RNA | retained_intron |
| -20830 | enst00000468335 | sg00000239393 | ac146507.1-201 | 5 | 177346073 | 177346426 | + | pseudogenic_transcript | processed_pseudogene |
| 21763 | enst00000513614 | sg00000131183 | slc34a1-205 | 5 | 177389647 | 177398840 | + | lnc_RNA | processed_transcript |
| -28359 | enst00000502721 | sg00000169223 | lman2-203 | 5 | 177336911 | 177338544 | - | lnc_RNA | retained_intron |
| -32351 | enst00000504071 | sg00000169223 | lman2-204 | 5 | 177331954 | 177334552 | - | lnc_RNA | retained_intron |
| 32777 | enst00000358571 | sg00000196570 | pfn3-201 | 5 | 177400109 | 177400661 | - | mRNA | protein_coding |
| 35320 | enst00000502598 | sg00000198055 | grk6-204 | 5 | 177403204 | 177432257 | + | mRNA | protein_coding |
| 35642 | enst00000514943 | sg00000131187 | f12-206 | 5 | 177402625 | 177403526 | - | lnc_RNA | processed_transcript |
| 35866 | enst00000504406 | sg00000131187 | f12-204 | 5 | 177402163 | 177403750 | - | lnc_RNA | retained_intron |
| 36522 | enst00000506296 | sg00000198055 | grk6-205 | 5 | 177404406 | 177434030 | + | mRNA | protein_coding |
| 36588 | enst00000510358 | sg00000131187 | f12-205 | 5 | 177402172 | 177404472 | - | lnc_RNA | retained_intron |
| 36588 | enst00000502854 | sg00000131187 | f12-202 | 5 | 177402160 | 177404472 | - | lnc_RNA | retained_intron |
| 37097 | enst00000503736 | sg00000131187 | f12-203 | 5 | 177403492 | 177404981 | - | lnc_RNA | retained_intron |
| 41692 | enst00000253496 | sg00000131187 | f12-201 | 5 | 177402140 | 177409576 | - | mRNA | protein_coding |
| -54146 | enst00000513063 | sg00000213347 | mxd3-208 | 5 | 177307435 | 177312757 | - | mRNA | protein_coding |
| -54594 | enst00000439742 | sg00000213347 | mxd3-203 | 5 | 177307205 | 177312309 | - | mRNA | protein_coding |
| -55005 | enst00000427908 | sg00000213347 | mxd3-202 | 5 | 177305500 | 177311898 | - | mRNA | protein_coding |
| -55007 | enst00000502529 | sg00000213347 | mxd3-204 | 5 | 177307882 | 177311896 | - | mRNA | protein_coding |
| -55008 | enst00000423571 | sg00000213347 | mxd3-201 | 5 | 177306817 | 177311895 | - | mRNA | protein_coding |
| -55021 | enst00000513169 | sg00000213347 | mxd3-209 | 5 | 177307813 | 177311882 | - | mRNA | protein_coding |
| -55028 | enst00000503782 | sg00000213347 | mxd3-206 | 5 | 177307208 | 177311875 | - | lnc_RNA | retained_intron |
| -55033 | enst00000503473 | sg00000213347 | mxd3-205 | 5 | 177301461 | 177311870 | - | lnc_RNA | retained_intron |
| 58612 | enst00000511244 | sg00000198055 | grk6-208 | 5 | 177426496 | 177433189 | + | mRNA | protein_coding |
| 58792 | enst00000355472 | sg00000198055 | grk6-201 | 5 | 177426676 | 177442891 | + | mRNA | protein_coding |
| -58841 | enst00000509339 | sg00000213347 | mxd3-207 | 5 | 177302752 | 177308062 | - | lnc_RNA | retained_intron |
| 58861 | enst00000507633 | sg00000198055 | grk6-206 | 5 | 177426745 | 177436685 | + | mRNA | protein_coding |
| 58910 | enst00000393576 | sg00000198055 | grk6-203 | 5 | 177426794 | 177442901 | + | mRNA | protein_coding |
| 58959 | enst00000355958 | sg00000198055 | grk6-202 | 5 | 177426843 | 177441353 | + | mRNA | protein_coding |
| 58959 | enst00000528793 | sg00000198055 | grk6-211 | 5 | 177426843 | 177442625 | + | mRNA | protein_coding |
| 58970 | enst00000512684 | sg00000198055 | grk6-209 | 5 | 177426854 | 177430967 | + | mRNA | protein_coding |
| -61287 | enst00000510701 | sg00000169230 | prelid1-206 | 5 | 177305616 | 177306163 | + | lnc_RNA | retained_intron |
| -62215 | enst00000503853 | sg00000169230 | prelid1-204 | 5 | 177304688 | 177306614 | + | mRNA | protein_coding |
| -63048 | enst00000502670 | sg00000169230 | prelid1-202 | 5 | 177303855 | 177304850 | + | lnc_RNA | processed_transcript |
| -63082 | enst00000503216 | sg00000169230 | prelid1-203 | 5 | 177303821 | 177306949 | + | mRNA | protein_coding |
| -63088 | enst00000504594 | sg00000169230 | prelid1-205 | 5 | 177303815 | 177306669 | + | mRNA | nonsense_mediated_decay |
| -63092 | enst00000510797 | sg00000169230 | prelid1-207 | 5 | 177303811 | 177306153 | + | mRNA | nonsense_mediated_decay |
| -63100 | enst00000511309 | sg00000169230 | prelid1-208 | 5 | 177303803 | 177306147 | + | lnc_RNA | retained_intron |
| -63104 | enst00000303204 | sg00000169230 | prelid1-201 | 5 | 177303799 | 177306949 | + | mRNA | protein_coding |
| -63159 | enst00000504395 | sg00000169228 | rab24-208 | 5 | 177302820 | 177303744 | - | mRNA | protein_coding |
| -63170 | enst00000478234 | sg00000169228 | rab24-206 | 5 | 177301198 | 177303733 | - | lnc_RNA | retained_intron |
| -63184 | enst00000303251 | sg00000169228 | rab24-201 | 5 | 177301198 | 177303719 | - | mRNA | protein_coding |
| -63193 | enst00000303270 | sg00000169228 | rab24-202 | 5 | 177301486 | 177303710 | - | mRNA | protein_coding |
| -63197 | enst00000393611 | sg00000169228 | rab24-204 | 5 | 177301451 | 177303706 | - | mRNA | protein_coding |
| -63198 | enst00000471466 | sg00000169228 | rab24-205 | 5 | 177301503 | 177303705 | - | lnc_RNA | retained_intron |
| -63222 | enst00000495458 | sg00000169228 | rab24-207 | 5 | 177301452 | 177303681 | - | lnc_RNA | retained_intron |
| -63242 | enst00000512758 | sg00000169228 | rab24-209 | 5 | 177303057 | 177303661 | - | lnc_RNA | retained_intron |
| -63261 | enst00000393610 | sg00000169228 | rab24-203 | 5 | 177302235 | 177303642 | - | lnc_RNA | retained_intron |
| 63827 | enst00000515666 | sg00000198055 | grk6-210 | 5 | 177431711 | 177442064 | + | lnc_RNA | retained_intron |
| 64349 | enst00000508705 | sg00000198055 | grk6-207 | 5 | 177432233 | 177436121 | + | mRNA | nonsense_mediated_decay |
| 76593 | enst00000511565 | sg00000246334 | prr7-as1-203 | 5 | 177443067 | 177444477 | - | lnc_RNA | lncrna |
| 76696 | enst00000514846 | sg00000246334 | prr7-as1-204 | 5 | 177442803 | 177444580 | - | lnc_RNA | lncrna |
| -78377 | enst00000513736 | sg00000165671 | nsd1-213 | 5 | 177288526 | 177292127 | + | lnc_RNA | retained_intron |
| 78561 | enst00000507881 | sg00000131188 | prr7-203 | 5 | 177446445 | 177455832 | + | mRNA | protein_coding |
| 78930 | enst00000323249 | sg00000131188 | prr7-201 | 5 | 177446814 | 177456286 | + | mRNA | protein_coding |
| 78943 | enst00000502922 | sg00000131188 | prr7-202 | 5 | 177446827 | 177456268 | + | mRNA | protein_coding |
| 79814 | enst00000506465 | sg00000246334 | prr7-as1-202 | 5 | 177445979 | 177447698 | - | lnc_RNA | lncrna |
| 79815 | enst00000425316 | sg00000246334 | prr7-as1-201 | 5 | 177438503 | 177447699 | - | lnc_RNA | lncrna |
| 80450 | enst00000510492 | sg00000131188 | prr7-204 | 5 | 177448334 | 177456268 | + | mRNA | protein_coding |
| 92758 | enst00000467054 | sg00000113758 | dbn1-204 | 5 | 177458297 | 177460642 | - | lnc_RNA | retained_intron |
| 94529 | enst00000512501 | sg00000113758 | dbn1-210 | 5 | 177457367 | 177462413 | - | mRNA | protein_coding |
| 99714 | enst00000471767 | sg00000113758 | dbn1-205 | 5 | 177466831 | 177467598 | - | lnc_RNA | retained_intron |
| -100315 | enst00000604252 | sg00000270706 | prmt1p1-201 | 5 | 177265580 | 177266588 | - | pseudogenic_transcript | processed_pseudogene |
| -100316 | enst00000515735 | sg00000165671 | nsd1-214 | 5 | 177266587 | 177273678 | + | mRNA | protein_coding |
| -100523 | enst00000505395 | sg00000165671 | nsd1-207 | 5 | 177266380 | 177269671 | + | mRNA | protein_coding |
| -100566 | enst00000504457 | sg00000165671 | nsd1-206 | 5 | 177266337 | 177269684 | + | mRNA | protein_coding |
| -101176 | enst00000503056 | sg00000165671 | nsd1-205 | 5 | 177265727 | 177280583 | + | mRNA | protein_coding |
| -101438 | enst00000508029 | sg00000165671 | nsd1-208 | 5 | 177265465 | 177269758 | + | mRNA | protein_coding |
| -102137 | enst00000460608 | sg00000240729 | ac146507.2-201 | 5 | 177264766 | 177265241 | + | pseudogenic_transcript | processed_pseudogene |
| 104986 | enst00000506117 | sg00000113758 | dbn1-209 | 5 | 177467490 | 177472870 | - | mRNA | protein_coding |
| 105314 | enst00000292385 | sg00000113758 | dbn1-201 | 5 | 177456927 | 177473198 | - | mRNA | protein_coding |
| 105729 | enst00000477391 | sg00000113758 | dbn1-207 | 5 | 177460432 | 177473613 | - | mRNA | protein_coding |
| 105738 | enst00000505550 | sg00000113758 | dbn1-208 | 5 | 177468553 | 177473622 | - | lnc_RNA | retained_intron |
| 105740 | enst00000472831 | sg00000113758 | dbn1-206 | 5 | 177456934 | 177473624 | - | lnc_RNA | retained_intron |
| 105753 | enst00000393565 | sg00000113758 | dbn1-203 | 5 | 177456936 | 177473637 | - | mRNA | protein_coding |
| 105857 | enst00000309007 | sg00000113758 | dbn1-202 | 5 | 177456608 | 177473741 | - | mRNA | protein_coding |
| 106517 | enst00000514833 | sg00000113758 | dbn1-211 | 5 | 177467586 | 177474401 | - | mRNA | protein_coding |
| -106563 | enst00000657928 | sg00000286634 | ac146507.3-201 | 5 | 177260340 | 177263909 | + | lnc_RNA | lncrna |
| 111772 | enst00000623593 | sg00000279821 | ac145098.2-201 | 5 | 177476631 | 177479656 | - | unconfirmed_transcript | tec |
| 116589 | enst00000504380 | sg00000196923 | pdlim7-212 | 5 | 177483695 | 177484473 | - | lnc_RNA | retained_intron |
| 117130 | enst00000505746 | sg00000196923 | pdlim7-214 | 5 | 177483875 | 177485014 | - | lnc_RNA | processed_transcript |
| 124688 | enst00000504318 | sg00000196923 | pdlim7-211 | 5 | 177491072 | 177492572 | - | lnc_RNA | retained_intron |
| 125086 | enst00000503346 | sg00000196923 | pdlim7-209 | 5 | 177491073 | 177492970 | - | lnc_RNA | retained_intron |
| 127111 | enst00000506025 | sg00000248996 | ac145098.1-201 | 5 | 177494995 | 177503647 | + | lnc_RNA | lncrna |
| 128543 | enst00000503827 | sg00000196923 | pdlim7-210 | 5 | 177491096 | 177496427 | - | mRNA | nonsense_mediated_decay |
| 128947 | enst00000506161 | sg00000196923 | pdlim7-215 | 5 | 177491025 | 177496831 | - | mRNA | protein_coding |
| 128993 | enst00000506537 | sg00000196923 | pdlim7-216 | 5 | 177492413 | 177496877 | - | mRNA | protein_coding |
| 129677 | enst00000359895 | sg00000196923 | pdlim7-203 | 5 | 177483394 | 177497561 | - | mRNA | protein_coding |
| 129677 | enst00000493815 | sg00000196923 | pdlim7-208 | 5 | 177483394 | 177497561 | - | mRNA | nonsense_mediated_decay |
| 129689 | enst00000355572 | sg00000196923 | pdlim7-201 | 5 | 177490246 | 177497573 | - | mRNA | protein_coding |
| 129699 | enst00000393551 | sg00000196923 | pdlim7-205 | 5 | 177487897 | 177497583 | - | mRNA | protein_coding |
| 129702 | enst00000505074 | sg00000196923 | pdlim7-213 | 5 | 177489811 | 177497586 | - | mRNA | protein_coding |
| 129717 | enst00000486828 | sg00000196923 | pdlim7-207 | 5 | 177483398 | 177497601 | - | mRNA | nonsense_mediated_decay |
| 129717 | enst00000393546 | sg00000196923 | pdlim7-204 | 5 | 177491010 | 177497601 | - | mRNA | protein_coding |
| 129720 | enst00000355841 | sg00000196923 | pdlim7-202 | 5 | 177483394 | 177497604 | - | mRNA | protein_coding |
| 129722 | enst00000463411 | sg00000196923 | pdlim7-206 | 5 | 177491759 | 177497606 | - | lnc_RNA | retained_intron |
| 140993 | enst00000500323 | sg00000146094 | dok3-204 | 5 | 177502088 | 177508877 | - | lnc_RNA | retained_intron |
| 141942 | enst00000502885 | sg00000146094 | dok3-207 | 5 | 177505051 | 177509826 | - | mRNA | protein_coding |
| 141942 | enst00000512660 | sg00000146094 | dok3-213 | 5 | 177509166 | 177509826 | - | lnc_RNA | retained_intron |
| 141945 | enst00000506493 | sg00000146094 | dok3-208 | 5 | 177505013 | 177509829 | - | mRNA | protein_coding |
| 141962 | enst00000510380 | sg00000146094 | dok3-210 | 5 | 177504747 | 177509846 | - | mRNA | protein_coding |
| 141973 | enst00000510898 | sg00000146094 | dok3-212 | 5 | 177503748 | 177509857 | - | mRNA | protein_coding |
| 141973 | enst00000357198 | sg00000146094 | dok3-202 | 5 | 177503750 | 177509857 | - | mRNA | protein_coding |
| 142498 | enst00000502380 | sg00000146094 | dok3-206 | 5 | 177508784 | 177510382 | - | lnc_RNA | retained_intron |
| 142498 | enst00000377112 | sg00000146094 | dok3-203 | 5 | 177502088 | 177510382 | - | mRNA | protein_coding |
| 142498 | enst00000501403 | sg00000146094 | dok3-205 | 5 | 177503784 | 177510382 | - | mRNA | protein_coding |
| 142501 | enst00000312943 | sg00000146094 | dok3-201 | 5 | 177501907 | 177510385 | - | mRNA | protein_coding |
| 143383 | enst00000510389 | sg00000146094 | dok3-211 | 5 | 177509502 | 177511267 | - | mRNA | protein_coding |
| 143390 | enst00000509310 | sg00000146094 | dok3-209 | 5 | 177508478 | 177511274 | - | mRNA | protein_coding |
| 144661 | enst00000512334 | sg00000183258 | ddx41-214 | 5 | 177511577 | 177512545 | - | lnc_RNA | retained_intron |
| 145900 | enst00000512027 | sg00000183258 | ddx41-213 | 5 | 177513002 | 177513784 | - | lnc_RNA | retained_intron |
| 146759 | enst00000652565 | sg00000183258 | ddx41-221 | 5 | 177511596 | 177514643 | - | lnc_RNA | processed_transcript |
| 146862 | enst00000504807 | sg00000183258 | ddx41-204 | 5 | 177512496 | 177514746 | - | lnc_RNA | retained_intron |
| 147155 | enst00000513562 | sg00000183258 | ddx41-216 | 5 | 177513435 | 177515039 | - | lnc_RNA | retained_intron |
| 147449 | enst00000507900 | sg00000183258 | ddx41-207 | 5 | 177511600 | 177515333 | - | lnc_RNA | retained_intron |
| 147469 | enst00000511040 | sg00000183258 | ddx41-212 | 5 | 177513072 | 177515353 | - | lnc_RNA | retained_intron |
| 147847 | enst00000508279 | sg00000183258 | ddx41-209 | 5 | 177513399 | 177515731 | - | mRNA | nonsense_mediated_decay |
| 148440 | enst00000504781 | sg00000183258 | ddx41-203 | 5 | 177514938 | 177516324 | - | mRNA | nonsense_mediated_decay |
| 148754 | enst00000652618 | sg00000183258 | ddx41-222 | 5 | 177511628 | 177516638 | - | lnc_RNA | retained_intron |
| 148995 | enst00000650742 | sg00000183258 | ddx41-220 | 5 | 177512103 | 177516879 | - | lnc_RNA | retained_intron |
| 149011 | enst00000515562 | sg00000183258 | ddx41-217 | 5 | 177515341 | 177516895 | - | lnc_RNA | retained_intron |
| 149050 | enst00000652623 | sg00000183258 | ddx41-223 | 5 | 177511638 | 177516934 | - | lnc_RNA | retained_intron |
| 149051 | enst00000512431 | sg00000183258 | ddx41-215 | 5 | 177514929 | 177516935 | - | lnc_RNA | retained_intron |
| 149061 | enst00000629036 | sg00000183258 | ddx41-219 | 5 | 177515305 | 177516945 | - | mRNA | protein_coding |
| 149061 | enst00000625286 | sg00000183258 | ddx41-218 | 5 | 177516505 | 177516945 | - | mRNA | protein_coding |
| 149061 | enst00000507955 | sg00000183258 | ddx41-208 | 5 | 177511577 | 177516945 | - | mRNA | nonsense_mediated_decay |
| 149066 | enst00000509576 | sg00000183258 | ddx41-210 | 5 | 177514981 | 177516950 | - | mRNA | nonsense_mediated_decay |
| 149066 | enst00000506965 | sg00000183258 | ddx41-206 | 5 | 177515022 | 177516950 | - | lnc_RNA | processed_transcript |
| 149066 | enst00000505081 | sg00000183258 | ddx41-205 | 5 | 177511578 | 177516950 | - | lnc_RNA | retained_intron |
| 149077 | enst00000503078 | sg00000183258 | ddx41-202 | 5 | 177511578 | 177516961 | - | lnc_RNA | retained_intron |
| 149077 | enst00000330503 | sg00000183258 | ddx41-201 | 5 | 177511577 | 177516961 | - | mRNA | protein_coding |
| 149077 | enst00000510171 | sg00000183258 | ddx41-211 | 5 | 177515772 | 177516961 | - | mRNA | nonsense_mediated_decay |
| 154278 | enst00000506879 | sg00000146067 | fam193b-207 | 5 | 177519791 | 177522162 | - | lnc_RNA | retained_intron |
| -154792 | enst00000375350 | sg00000165671 | nsd1-203 | 5 | 177212111 | 177239865 | + | mRNA | nonsense_mediated_decay |
| 155115 | enst00000504130 | sg00000146067 | fam193b-202 | 5 | 177519931 | 177522999 | - | lnc_RNA | processed_transcript |
| 156129 | enst00000513282 | sg00000146067 | fam193b-215 | 5 | 177519789 | 177524013 | - | mRNA | nonsense_mediated_decay |
| 156537 | enst00000505241 | sg00000146067 | fam193b-203 | 5 | 177523180 | 177524421 | - | lnc_RNA | processed_transcript |
| 156610 | enst00000507212 | sg00000146067 | fam193b-209 | 5 | 177520056 | 177524494 | - | mRNA | nonsense_mediated_decay |
| 157603 | enst00000505569 | sg00000146067 | fam193b-204 | 5 | 177519789 | 177525487 | - | lnc_RNA | retained_intron |
| 163950 | enst00000513502 | sg00000146067 | fam193b-216 | 5 | 177525054 | 177531834 | - | lnc_RNA | retained_intron |
| 164649 | enst00000524677 | sg00000146067 | fam193b-219 | 5 | 177519792 | 177532533 | - | mRNA | protein_coding |
| 164728 | enst00000506064 | sg00000146067 | fam193b-205 | 5 | 177531338 | 177532612 | - | lnc_RNA | processed_transcript |
| 168506 | enst00000510163 | sg00000146067 | fam193b-212 | 5 | 177519791 | 177536390 | - | mRNA | nonsense_mediated_decay |
| 170135 | enst00000515394 | sg00000146067 | fam193b-218 | 5 | 177536304 | 177538019 | - | lnc_RNA | retained_intron |
| 171182 | enst00000510479 | sg00000146067 | fam193b-214 | 5 | 177519790 | 177539066 | - | mRNA | nonsense_mediated_decay |
| 171467 | enst00000502403 | sg00000146067 | fam193b-201 | 5 | 177537987 | 177539351 | - | mRNA | protein_coding |
| 185382 | enst00000506432 | sg00000146067 | fam193b-206 | 5 | 177538085 | 177553266 | - | mRNA | protein_coding |
| 185882 | enst00000510429 | sg00000146067 | fam193b-213 | 5 | 177538006 | 177553766 | - | mRNA | protein_coding |
| 186463 | enst00000507587 | sg00000146067 | fam193b-210 | 5 | 177538911 | 177554347 | - | mRNA | nonsense_mediated_decay |
| 186574 | enst00000508298 | sg00000146067 | fam193b-211 | 5 | 177525197 | 177554458 | - | lnc_RNA | processed_transcript |
| 186657 | enst00000506955 | sg00000146067 | fam193b-208 | 5 | 177519790 | 177554541 | - | mRNA | nonsense_mediated_decay |
| 186679 | enst00000514747 | sg00000146067 | fam193b-217 | 5 | 177519789 | 177554563 | - | mRNA | protein_coding |
| 186940 | enst00000606358 | sg00000272459 | ac139795.3-201 | 5 | 177554824 | 177555364 | + | lnc_RNA | lncrna |
| 224319 | enst00000332598 | sg00000184840 | tmed9-201 | 5 | 177592203 | 177597242 | + | mRNA | protein_coding |
| 224333 | enst00000505521 | sg00000184840 | tmed9-202 | 5 | 177592217 | 177594115 | + | lnc_RNA | retained_intron |
| 224388 | enst00000507723 | sg00000184840 | tmed9-204 | 5 | 177592272 | 177595420 | + | lnc_RNA | retained_intron |
| 224604 | enst00000513799 | sg00000184840 | tmed9-206 | 5 | 177592488 | 177595577 | + | lnc_RNA | retained_intron |
| 224766 | enst00000507578 | sg00000184840 | tmed9-203 | 5 | 177592650 | 177594195 | + | lnc_RNA | processed_transcript |
| 225338 | enst00000510499 | sg00000184840 | tmed9-205 | 5 | 177593222 | 177595386 | + | lnc_RNA | retained_intron |
| -231736 | enst00000644863 | sg00000165671 | nsd1-217 | 5 | 177135167 | 177210068 | + | mRNA | nonsense_mediated_decay |
| -231736 | enst00000638627 | sg00000165671 | nsd1-216 | 5 | 177135167 | 177210453 | + | mRNA | nonsense_mediated_decay |
| 232248 | enst00000029410 | sg00000027847 | b4galt7-201 | 5 | 177600132 | 177610330 | + | mRNA | protein_coding |
| 232248 | enst00000502420 | sg00000027847 | b4galt7-202 | 5 | 177600132 | 177608214 | + | lnc_RNA | retained_intron |
| 232278 | enst00000505433 | sg00000027847 | b4galt7-204 | 5 | 177600162 | 177609707 | + | mRNA | nonsense_mediated_decay |
| 232322 | enst00000510761 | sg00000027847 | b4galt7-207 | 5 | 177600206 | 177607357 | + | mRNA | protein_coding |
| 232346 | enst00000505468 | sg00000027847 | b4galt7-205 | 5 | 177600230 | 177607338 | + | mRNA | protein_coding |
| -232674 | enst00000347982 | sg00000165671 | nsd1-201 | 5 | 177134229 | 177295762 | + | mRNA | protein_coding |
| -232730 | enst00000511258 | sg00000165671 | nsd1-211 | 5 | 177134173 | 177137404 | + | mRNA | protein_coding |
| -232978 | enst00000439151 | sg00000165671 | nsd1-204 | 5 | 177133925 | 177300215 | + | mRNA | protein_coding |
| -233105 | enst00000602285 | sg00000165671 | nsd1-215 | 5 | 177133798 | 177136345 | + | lnc_RNA | retained_intron |
| -233303 | enst00000508896 | sg00000165671 | nsd1-209 | 5 | 177133600 | 177209672 | + | mRNA | protein_coding |
| -233824 | enst00000510954 | sg00000165671 | nsd1-210 | 5 | 177133079 | 177204236 | + | mRNA | protein_coding |
| -233824 | enst00000354179 | sg00000165671 | nsd1-202 | 5 | 177133079 | 177300210 | + | mRNA | protein_coding |
| -233878 | enst00000512992 | sg00000165671 | nsd1-212 | 5 | 177133025 | 177135426 | + | lnc_RNA | retained_intron |
| 236428 | enst00000507061 | sg00000027847 | b4galt7-206 | 5 | 177604312 | 177605224 | + | mRNA | protein_coding |
| 237907 | enst00000505145 | sg00000027847 | b4galt7-203 | 5 | 177605791 | 177610266 | + | lnc_RNA | retained_intron |
| 239481 | enst00000515353 | sg00000027847 | b4galt7-208 | 5 | 177607365 | 177610328 | + | lnc_RNA | retained_intron |
| 243356 | enst00000665249 | sg00000247679 | ac139795.2-202 | 5 | 177611240 | 177619754 | + | lnc_RNA | lncrna |
| 243369 | enst00000499900 | sg00000247679 | ac139795.2-201 | 5 | 177611253 | 177619754 | + | lnc_RNA | lncrna |
| 249662 | enst00000656340 | sg00000247679 | ac139795.2-203 | 5 | 177617546 | 177619746 | + | lnc_RNA | lncrna |
| 263651 | enst00000499314 | sg00000246596 | ac139795.1-201 | 5 | 177619059 | 177631535 | - | lnc_RNA | processed_transcript |
| -269712 | enst00000513423 | sg00000160867 | fgfr4-215 | 5 | 177097191 | 177097764 | + | lnc_RNA | retained_intron |
| -272078 | enst00000483872 | sg00000160867 | fgfr4-206 | 5 | 177094825 | 177095579 | + | lnc_RNA | retained_intron |
| -273728 | enst00000511076 | sg00000160867 | fgfr4-213 | 5 | 177093175 | 177096179 | + | mRNA | protein_coding |
| -275125 | enst00000508139 | sg00000160867 | fgfr4-210 | 5 | 177091778 | 177093496 | + | lnc_RNA | retained_intron |
| -277300 | enst00000509511 | sg00000160867 | fgfr4-211 | 5 | 177089603 | 177093068 | + | lnc_RNA | retained_intron |
| -277305 | enst00000426612 | sg00000160867 | fgfr4-204 | 5 | 177089598 | 177091096 | + | lnc_RNA | retained_intron |
| -277327 | enst00000430285 | sg00000160867 | fgfr4-205 | 5 | 177089576 | 177091104 | + | mRNA | nonsense_mediated_decay |
| -277336 | enst00000393637 | sg00000160867 | fgfr4-202 | 5 | 177089567 | 177097769 | + | mRNA | protein_coding |
| -279484 | enst00000513166 | sg00000160867 | fgfr4-214 | 5 | 177087419 | 177090622 | + | mRNA | protein_coding |
| -279987 | enst00000510911 | sg00000160867 | fgfr4-212 | 5 | 177086916 | 177090560 | + | mRNA | protein_coding |
| -279987 | enst00000507708 | sg00000160867 | fgfr4-209 | 5 | 177086916 | 177090563 | + | lnc_RNA | processed_transcript |
| -279988 | enst00000292408 | sg00000160867 | fgfr4-201 | 5 | 177086915 | 177098144 | + | mRNA | protein_coding |
| -279989 | enst00000502906 | sg00000160867 | fgfr4-207 | 5 | 177086914 | 177097732 | + | mRNA | protein_coding |
| -279989 | enst00000514472 | sg00000160867 | fgfr4-216 | 5 | 177086914 | 177090641 | + | mRNA | protein_coding |
| -279998 | enst00000503708 | sg00000160867 | fgfr4-208 | 5 | 177086905 | 177091104 | + | mRNA | protein_coding |
| -279998 | enst00000393648 | sg00000160867 | fgfr4-203 | 5 | 177086905 | 177098022 | + | mRNA | protein_coding |
| 304265 | enst00000500444 | sg00000246596 | ac139795.1-202 | 5 | 177626436 | 177672149 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 304325 | enst00000515045 | sg00000246596 | ac139795.1-203 | 5 | 177632075 | 177672209 | - | lnc_RNA | processed_transcript |
| 314410 | enst00000509363 | sg00000249849 | ac138819.1-201 | 5 | 177682294 | 177713969 | + | lnc_RNA | lncrna |
| -315189 | enst00000515264 | sg00000251666 | znf346-it1-201 | 5 | 177051714 | 177052963 | + | lnc_RNA | lncrna |
| -322576 | enst00000504600 | sg00000113761 | znf346-204 | 5 | 177044327 | 177050892 | + | lnc_RNA | retained_intron |
| -343999 | enst00000510933 | sg00000113761 | znf346-207 | 5 | 177022904 | 177042249 | + | lnc_RNA | retained_intron |
| -344168 | enst00000503039 | sg00000113761 | znf346-202 | 5 | 177022735 | 177081189 | + | mRNA | protein_coding |
| -344168 | enst00000513587 | sg00000113761 | znf346-210 | 5 | 177022735 | 177065018 | + | mRNA | nonsense_mediated_decay |
| -344171 | enst00000511834 | sg00000113761 | znf346-208 | 5 | 177022732 | 177065965 | + | mRNA | protein_coding |
| -344187 | enst00000508155 | sg00000113761 | znf346-206 | 5 | 177022716 | 177065458 | + | mRNA | nonsense_mediated_decay |
| -344199 | enst00000503425 | sg00000113761 | znf346-203 | 5 | 177022704 | 177064966 | + | mRNA | protein_coding |
| -344207 | enst00000512315 | sg00000113761 | znf346-209 | 5 | 177022696 | 177080554 | + | mRNA | protein_coding |
| -344207 | enst00000358149 | sg00000113761 | znf346-201 | 5 | 177022696 | 177067985 | + | mRNA | protein_coding |
| -344207 | enst00000506693 | sg00000113761 | znf346-205 | 5 | 177022696 | 177065241 | + | mRNA | protein_coding |
| -344270 | enst00000515488 | sg00000087206 | uimc1-214 | 5 | 176970690 | 177022633 | - | lnc_RNA | retained_intron |
| -344301 | enst00000509236 | sg00000087206 | uimc1-209 | 5 | 176969283 | 177022602 | - | mRNA | protein_coding |
| 346268 | enst00000514899 | sg00000170074 | fam153a-221 | 5 | 177713069 | 177714152 | - | lnc_RNA | processed_transcript |
| 348479 | enst00000509607 | sg00000170074 | fam153a-215 | 5 | 177713025 | 177716363 | - | lnc_RNA | processed_transcript |
| 349368 | enst00000506011 | sg00000170074 | fam153a-211 | 5 | 177707981 | 177717252 | - | lnc_RNA | processed_transcript |
| 355272 | enst00000512544 | sg00000170074 | fam153a-217 | 5 | 177722336 | 177723156 | - | lnc_RNA | processed_transcript |
| -360124 | enst00000511320 | sg00000087206 | uimc1-212 | 5 | 176905006 | 177006779 | - | mRNA | protein_coding |
| -360188 | enst00000512031 | sg00000087206 | uimc1-213 | 5 | 176905053 | 177006715 | - | mRNA | nonsense_mediated_decay |
| -360189 | enst00000507513 | sg00000087206 | uimc1-208 | 5 | 176970832 | 177006714 | - | mRNA | protein_coding |
| -360322 | enst00000506128 | sg00000087206 | uimc1-207 | 5 | 176905050 | 177006581 | - | mRNA | protein_coding |
| -360333 | enst00000428382 | sg00000087206 | uimc1-203 | 5 | 176982521 | 177006570 | - | mRNA | protein_coding |
| -360495 | enst00000377227 | sg00000087206 | uimc1-201 | 5 | 176905005 | 177006408 | - | mRNA | protein_coding |
| -360538 | enst00000417486 | sg00000087206 | uimc1-202 | 5 | 176969941 | 177006365 | - | lnc_RNA | retained_intron |
| 377330 | enst00000512612 | sg00000170074 | fam153a-218 | 5 | 177731574 | 177745214 | - | lnc_RNA | processed_transcript |
| 382510 | enst00000503909 | sg00000170074 | fam153a-207 | 5 | 177741294 | 177750394 | - | lnc_RNA | processed_transcript |
| 385322 | enst00000614127 | sg00000170074 | fam153a-223 | 5 | 177723365 | 177753206 | - | mRNA | protein_coding |
| 385379 | enst00000505683 | sg00000170074 | fam153a-210 | 5 | 177740193 | 177753263 | - | lnc_RNA | processed_transcript |
| 385379 | enst00000507615 | sg00000170074 | fam153a-214 | 5 | 177747454 | 177753263 | - | lnc_RNA | retained_intron |
| 385391 | enst00000506354 | sg00000170074 | fam153a-213 | 5 | 177747527 | 177753275 | - | lnc_RNA | retained_intron |
| 385391 | enst00000515787 | sg00000170074 | fam153a-222 | 5 | 177737048 | 177753275 | - | mRNA | nonsense_mediated_decay |
| 385412 | enst00000504518 | sg00000170074 | fam153a-208 | 5 | 177739635 | 177753296 | - | mRNA | protein_coding |
| 385413 | enst00000503845 | sg00000170074 | fam153a-206 | 5 | 177739615 | 177753297 | - | mRNA | nonsense_mediated_decay |
| -386627 | enst00000505879 | sg00000087206 | uimc1-206 | 5 | 176975416 | 176980276 | - | lnc_RNA | processed_transcript |
| -396110 | enst00000510698 | sg00000087206 | uimc1-211 | 5 | 176905066 | 176970793 | - | mRNA | protein_coding |
| -398014 | enst00000503273 | sg00000087206 | uimc1-204 | 5 | 176908633 | 176968889 | - | lnc_RNA | processed_transcript |
| 412581 | enst00000360669 | sg00000170074 | fam153a-201 | 5 | 177711069 | 177780465 | - | mRNA | nonsense_mediated_decay |
| 412749 | enst00000513554 | sg00000170074 | fam153a-220 | 5 | 177723577 | 177780633 | - | mRNA | protein_coding |
| 412792 | enst00000440605 | sg00000170074 | fam153a-203 | 5 | 177723364 | 177780676 | - | mRNA | protein_coding |
| 412961 | enst00000393518 | sg00000170074 | fam153a-202 | 5 | 177723951 | 177780845 | - | mRNA | protein_coding |
| 413800 | enst00000513363 | sg00000170074 | fam153a-219 | 5 | 177779497 | 177781684 | - | lnc_RNA | processed_transcript |
| 414313 | enst00000502515 | sg00000249109 | ac140125.2-201 | 5 | 177782197 | 177794396 | + | lnc_RNA | lncrna |
| 414929 | enst00000506229 | sg00000170074 | fam153a-212 | 5 | 177779556 | 177782813 | - | lnc_RNA | processed_transcript |
| 414953 | enst00000505531 | sg00000170074 | fam153a-209 | 5 | 177724159 | 177782837 | - | mRNA | protein_coding |
| 415081 | enst00000503567 | sg00000170074 | fam153a-205 | 5 | 177747724 | 177782965 | - | mRNA | protein_coding |
| 415480 | enst00000503136 | sg00000170074 | fam153a-204 | 5 | 177762929 | 177783364 | - | lnc_RNA | processed_transcript |
| 415514 | enst00000510276 | sg00000170074 | fam153a-216 | 5 | 177722295 | 177783398 | - | mRNA | protein_coding |
| 435460 | enst00000515739 | sg00000248943 | ac140125.1-201 | 5 | 177801204 | 177803344 | - | lnc_RNA | lncrna |
| 441523 | enst00000515065 | sg00000170089 | ac106795.1-201 | 5 | 177809407 | 177883916 | + | lnc_RNA | processed_transcript |
| 441597 | enst00000506082 | sg00000170089 | ac106795.1-202 | 5 | 177809481 | 177882383 | + | lnc_RNA | processed_transcript |
| -459596 | enst00000505229 | sg00000087206 | uimc1-205 | 5 | 176905658 | 176907307 | - | lnc_RNA | retained_intron |
| -460727 | enst00000510376 | sg00000087206 | uimc1-210 | 5 | 176905193 | 176906176 | - | lnc_RNA | retained_intron |
| 464868 | enst00000510692 | sg00000170089 | ac106795.1-203 | 5 | 177832752 | 177882516 | + | lnc_RNA | processed_transcript |
| -467557 | enst00000292432 | sg00000160883 | hk3-201 | 5 | 176880869 | 176899346 | - | mRNA | protein_coding |
| 469762 | enst00000510464 | sg00000214351 | or1x5p-201 | 5 | 177836434 | 177837646 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -475365 | enst00000509717 | sg00000160883 | hk3-204 | 5 | 176887066 | 176891538 | - | mRNA | nonsense_mediated_decay |
| -475512 | enst00000504910 | sg00000160883 | hk3-202 | 5 | 176889661 | 176891391 | - | mRNA | nonsense_mediated_decay |
| -478256 | enst00000506834 | sg00000160883 | hk3-203 | 5 | 176880869 | 176888647 | - | lnc_RNA | retained_intron |
| -482769 | enst00000514058 | sg00000160883 | hk3-205 | 5 | 176881956 | 176884134 | - | mRNA | protein_coding |
| -485031 | enst00000514666 | sg00000160883 | hk3-206 | 5 | 176881302 | 176881872 | - | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc