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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #83 | 16 | 88634016 | 88635175 | 1159 | 3 | 42 | 9.46592e-19 | 1.1342e-16 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 3397 | enst00000244241 | sg00000124391 | il17c-201 | 16 | 88638572 | 88640468 | + | mRNA | protein_coding |
| 3416 | enst00000569133 | sg00000124391 | il17c-202 | 16 | 88638591 | 88640122 | + | lnc_RNA | retained_intron |
| -3861 | enst00000566660 | sg00000158545 | zc3h18-209 | 16 | 88630155 | 88631256 | + | lnc_RNA | retained_intron |
| -5368 | enst00000566317 | sg00000158545 | zc3h18-207 | 16 | 88628648 | 88631424 | + | lnc_RNA | retained_intron |
| -6094 | enst00000565583 | sg00000158545 | zc3h18-206 | 16 | 88627922 | 88631930 | + | mRNA | protein_coding |
| -6954 | enst00000566496 | sg00000158545 | zc3h18-208 | 16 | 88627062 | 88631934 | + | lnc_RNA | retained_intron |
| -9328 | enst00000563382 | sg00000158545 | zc3h18-203 | 16 | 88624688 | 88625684 | + | lnc_RNA | retained_intron |
| -9973 | enst00000564341 | sg00000158545 | zc3h18-205 | 16 | 88624043 | 88631847 | + | mRNA | protein_coding |
| 11650 | enst00000565588 | sg00000051523 | cyba-205 | 16 | 88643514 | 88646825 | - | mRNA | protein_coding |
| 15139 | enst00000566229 | sg00000051523 | cyba-206 | 16 | 88643540 | 88650314 | - | mRNA | protein_coding |
| 15813 | enst00000563526 | sg00000051523 | cyba-204 | 16 | 88645965 | 88650988 | - | lnc_RNA | retained_intron |
| 15840 | enst00000568278 | sg00000051523 | cyba-209 | 16 | 88646132 | 88651015 | - | mRNA | protein_coding |
| 15855 | enst00000569359 | sg00000051523 | cyba-210 | 16 | 88645087 | 88651030 | - | mRNA | protein_coding |
| 15856 | enst00000562209 | sg00000051523 | cyba-203 | 16 | 88646141 | 88651031 | - | lnc_RNA | retained_intron |
| 15860 | enst00000566534 | sg00000051523 | cyba-207 | 16 | 88643514 | 88651035 | - | lnc_RNA | retained_intron |
| 15866 | enst00000567174 | sg00000051523 | cyba-208 | 16 | 88644742 | 88651041 | - | mRNA | protein_coding |
| 15878 | enst00000261623 | sg00000051523 | cyba-201 | 16 | 88643289 | 88651053 | - | mRNA | protein_coding |
| 15879 | enst00000561972 | sg00000051523 | cyba-202 | 16 | 88647693 | 88651054 | - | lnc_RNA | processed_transcript |
| 18409 | enst00000562981 | sg00000167508 | mvd-205 | 16 | 88652354 | 88653584 | - | lnc_RNA | retained_intron |
| 19810 | enst00000561895 | sg00000167508 | mvd-202 | 16 | 88652510 | 88654985 | - | lnc_RNA | retained_intron |
| 22091 | enst00000565149 | sg00000167508 | mvd-209 | 16 | 88651935 | 88657266 | - | lnc_RNA | retained_intron |
| 22332 | enst00000565720 | sg00000167508 | mvd-211 | 16 | 88656261 | 88657507 | - | lnc_RNA | processed_transcript |
| 23608 | enst00000566636 | sg00000167508 | mvd-213 | 16 | 88656170 | 88658783 | - | lnc_RNA | retained_intron |
| -25499 | enst00000564161 | sg00000158545 | zc3h18-204 | 16 | 88608517 | 88626699 | + | lnc_RNA | retained_intron |
| 25697 | enst00000562651 | sg00000167508 | mvd-203 | 16 | 88657436 | 88660872 | - | lnc_RNA | retained_intron |
| 27854 | enst00000568709 | sg00000167508 | mvd-216 | 16 | 88656105 | 88663029 | - | lnc_RNA | processed_transcript |
| 27871 | enst00000565842 | sg00000167508 | mvd-212 | 16 | 88662115 | 88663046 | - | lnc_RNA | processed_transcript |
| 27890 | enst00000563170 | sg00000167508 | mvd-206 | 16 | 88656121 | 88663065 | - | lnc_RNA | retained_intron |
| 27904 | enst00000563463 | sg00000167508 | mvd-207 | 16 | 88658973 | 88663079 | - | lnc_RNA | processed_transcript |
| 27907 | enst00000568133 | sg00000167508 | mvd-215 | 16 | 88655663 | 88663082 | - | mRNA | nonsense_mediated_decay |
| 27916 | enst00000567064 | sg00000167508 | mvd-214 | 16 | 88655657 | 88663091 | - | mRNA | nonsense_mediated_decay |
| 27916 | enst00000301012 | sg00000167508 | mvd-201 | 16 | 88651940 | 88663091 | - | mRNA | protein_coding |
| 27919 | enst00000563785 | sg00000167508 | mvd-208 | 16 | 88655834 | 88663094 | - | lnc_RNA | retained_intron |
| 27962 | enst00000569177 | sg00000167508 | mvd-217 | 16 | 88655385 | 88663137 | - | mRNA | protein_coding |
| 27973 | enst00000565610 | sg00000167508 | mvd-210 | 16 | 88657944 | 88663148 | - | mRNA | nonsense_mediated_decay |
| 27986 | enst00000562741 | sg00000167508 | mvd-204 | 16 | 88662102 | 88663161 | - | lnc_RNA | processed_transcript |
| 28123 | enst00000563261 | sg00000260630 | snai3-as1-201 | 16 | 88663298 | 88687278 | + | lnc_RNA | lncrna |
| 28160 | enst00000669434 | sg00000260630 | snai3-as1-211 | 16 | 88663335 | 88675484 | + | lnc_RNA | lncrna |
| 28160 | enst00000565633 | sg00000260630 | snai3-as1-203 | 16 | 88663335 | 88673647 | + | lnc_RNA | lncrna |
| 28162 | enst00000563475 | sg00000260630 | snai3-as1-202 | 16 | 88663337 | 88675114 | + | lnc_RNA | lncrna |
| 28164 | enst00000654033 | sg00000260630 | snai3-as1-207 | 16 | 88663339 | 88676165 | + | lnc_RNA | lncrna |
| 28168 | enst00000661704 | sg00000260630 | snai3-as1-209 | 16 | 88663343 | 88674788 | + | lnc_RNA | lncrna |
| 28187 | enst00000661622 | sg00000260630 | snai3-as1-208 | 16 | 88663362 | 88675114 | + | lnc_RNA | lncrna |
| 28194 | enst00000569786 | sg00000260630 | snai3-as1-206 | 16 | 88663369 | 88672179 | + | lnc_RNA | lncrna |
| 32523 | enst00000663493 | sg00000260630 | snai3-as1-210 | 16 | 88667698 | 88676222 | + | lnc_RNA | lncrna |
| -34180 | enst00000568072 | sg00000158545 | zc3h18-211 | 16 | 88599836 | 88609264 | + | lnc_RNA | retained_intron |
| 38221 | enst00000568633 | sg00000260630 | snai3-as1-205 | 16 | 88673396 | 88675491 | + | lnc_RNA | lncrna |
| -47399 | enst00000567085 | sg00000158545 | zc3h18-210 | 16 | 88586617 | 88623270 | + | mRNA | protein_coding |
| 49958 | enst00000567997 | sg00000260630 | snai3-as1-204 | 16 | 88685133 | 88687180 | + | lnc_RNA | lncrna |
| 51332 | enst00000332281 | sg00000185669 | snai3-201 | 16 | 88677688 | 88686507 | - | mRNA | protein_coding |
| 61326 | enst00000561699 | sg00000259813 | ac138028.3-201 | 16 | 88696501 | 88698610 | + | lnc_RNA | lncrna |
| 63008 | enst00000565083 | sg00000158717 | rnf166-207 | 16 | 88697296 | 88698183 | - | lnc_RNA | processed_transcript |
| -63538 | enst00000569435 | sg00000158545 | zc3h18-212 | 16 | 88570478 | 88599802 | + | mRNA | protein_coding |
| -63613 | enst00000452588 | sg00000158545 | zc3h18-202 | 16 | 88570403 | 88631398 | + | mRNA | protein_coding |
| -63635 | enst00000301011 | sg00000158545 | zc3h18-201 | 16 | 88570381 | 88631966 | + | mRNA | protein_coding |
| 64531 | enst00000567408 | sg00000158717 | rnf166-208 | 16 | 88696499 | 88699706 | - | mRNA | protein_coding |
| 64881 | enst00000568683 | sg00000158717 | rnf166-210 | 16 | 88697394 | 88700056 | - | mRNA | protein_coding |
| 65428 | enst00000537718 | sg00000158717 | rnf166-202 | 16 | 88696502 | 88700603 | - | mRNA | protein_coding |
| 66475 | enst00000564894 | sg00000158717 | rnf166-206 | 16 | 88700756 | 88701650 | - | lnc_RNA | processed_transcript |
| 68066 | enst00000569478 | sg00000158717 | rnf166-211 | 16 | 88701317 | 88703241 | - | lnc_RNA | processed_transcript |
| 68427 | enst00000562499 | sg00000158717 | rnf166-204 | 16 | 88701297 | 88703602 | - | lnc_RNA | processed_transcript |
| 68442 | enst00000541206 | sg00000158717 | rnf166-203 | 16 | 88696536 | 88703617 | - | mRNA | protein_coding |
| 71087 | enst00000562544 | sg00000158717 | rnf166-205 | 16 | 88696499 | 88706262 | - | mRNA | protein_coding |
| 71223 | enst00000567844 | sg00000158717 | rnf166-209 | 16 | 88697479 | 88706398 | - | mRNA | protein_coding |
| 71233 | enst00000312838 | sg00000158717 | rnf166-201 | 16 | 88696501 | 88706408 | - | mRNA | protein_coding |
| 71308 | enst00000564105 | sg00000174177 | ctu2-204 | 16 | 88706483 | 88715320 | + | mRNA | nonsense_mediated_decay |
| 71308 | enst00000312060 | sg00000174177 | ctu2-201 | 16 | 88706483 | 88715386 | + | mRNA | protein_coding |
| 71328 | enst00000453996 | sg00000174177 | ctu2-202 | 16 | 88706503 | 88715396 | + | mRNA | protein_coding |
| 71347 | enst00000567949 | sg00000174177 | ctu2-210 | 16 | 88706522 | 88715386 | + | mRNA | protein_coding |
| 71370 | enst00000565071 | sg00000174177 | ctu2-207 | 16 | 88706545 | 88710908 | + | lnc_RNA | retained_intron |
| 71414 | enst00000564921 | sg00000174177 | ctu2-206 | 16 | 88706589 | 88712382 | + | mRNA | protein_coding |
| 74784 | enst00000566637 | sg00000174177 | ctu2-208 | 16 | 88709959 | 88715386 | + | lnc_RNA | retained_intron |
| 75262 | enst00000616106 | sg00000278341 | ac138028.6-201 | 16 | 88708956 | 88710437 | - | lnc_RNA | lncrna |
| 78305 | enst00000564584 | sg00000174177 | ctu2-205 | 16 | 88713480 | 88715364 | + | lnc_RNA | retained_intron |
| 79507 | enst00000567316 | sg00000174177 | ctu2-209 | 16 | 88714682 | 88715376 | + | mRNA | protein_coding |
| 79810 | enst00000562011 | sg00000174177 | ctu2-203 | 16 | 88714985 | 88715383 | + | lnc_RNA | retained_intron |
| 81037 | enst00000521877 | sg00000103335 | piezo1-214 | 16 | 88715449 | 88716212 | - | lnc_RNA | retained_intron |
| 81102 | enst00000518793 | sg00000103335 | piezo1-213 | 16 | 88715346 | 88716277 | - | mRNA | protein_coding |
| 81162 | enst00000578292 | sg00000284585 | mir4722-201 | 16 | 88716278 | 88716337 | - | miRNA | mirna |
| 81617 | enst00000472168 | sg00000103335 | piezo1-205 | 16 | 88715816 | 88716792 | - | lnc_RNA | retained_intron |
| 82436 | enst00000327397 | sg00000103335 | piezo1-202 | 16 | 88715491 | 88717611 | - | mRNA | protein_coding |
| 83440 | enst00000564984 | sg00000260121 | ac138028.4-201 | 16 | 88718615 | 88720459 | + | lnc_RNA | lncrna |
| 83566 | enst00000484567 | sg00000103335 | piezo1-208 | 16 | 88715346 | 88718741 | - | lnc_RNA | retained_intron |
| 84715 | enst00000419505 | sg00000103335 | piezo1-203 | 16 | 88715343 | 88719890 | - | mRNA | nonsense_mediated_decay |
| 85083 | enst00000466823 | sg00000103335 | piezo1-204 | 16 | 88717715 | 88720258 | - | mRNA | protein_coding |
| 85212 | enst00000497793 | sg00000103335 | piezo1-212 | 16 | 88718972 | 88720387 | - | lnc_RNA | retained_intron |
| 85298 | enst00000495568 | sg00000103335 | piezo1-211 | 16 | 88717023 | 88720473 | - | lnc_RNA | retained_intron |
| 88759 | enst00000566414 | sg00000103335 | piezo1-215 | 16 | 88722523 | 88723934 | - | lnc_RNA | retained_intron |
| 90850 | enst00000475586 | sg00000103335 | piezo1-207 | 16 | 88723947 | 88726025 | - | lnc_RNA | retained_intron |
| 91169 | enst00000474606 | sg00000103335 | piezo1-206 | 16 | 88722982 | 88726344 | - | mRNA | protein_coding |
| 92668 | enst00000491917 | sg00000103335 | piezo1-210 | 16 | 88727055 | 88727843 | - | lnc_RNA | retained_intron |
| 96005 | enst00000440406 | sg00000224888 | ac138028.2-201 | 16 | 88731180 | 88739188 | + | lnc_RNA | lncrna |
| 97805 | enst00000490756 | sg00000103335 | piezo1-209 | 16 | 88732464 | 88732980 | - | lnc_RNA | retained_intron |
| 101625 | enst00000567968 | sg00000224888 | ac138028.2-202 | 16 | 88736800 | 88741425 | + | lnc_RNA | lncrna |
| -102963 | enst00000563243 | sg00000261744 | ac116552.1-201 | 16 | 88512960 | 88531053 | - | lnc_RNA | lncrna |
| 106456 | enst00000566114 | sg00000260617 | ac138028.5-201 | 16 | 88741631 | 88742367 | + | lnc_RNA | lncrna |
| 107592 | enst00000333666 | sg00000182376 | ac138028.1-201 | 16 | 88742767 | 88745748 | + | lnc_RNA | lncrna |
| 107646 | enst00000567588 | sg00000182376 | ac138028.1-202 | 16 | 88742821 | 88745464 | + | lnc_RNA | lncrna |
| 150045 | enst00000301015 | sg00000103335 | piezo1-201 | 16 | 88715338 | 88785220 | - | mRNA | protein_coding |
| -165098 | enst00000577370 | sg00000263456 | mir5189-201 | 16 | 88468918 | 88469031 | + | miRNA | mirna |
| 168614 | enst00000301019 | sg00000167513 | cdt1-201 | 16 | 88803789 | 88809258 | + | mRNA | protein_coding |
| 169436 | enst00000562747 | sg00000167513 | cdt1-202 | 16 | 88804611 | 88806217 | + | lnc_RNA | retained_intron |
| 170593 | enst00000569140 | sg00000167513 | cdt1-203 | 16 | 88805768 | 88807342 | + | mRNA | protein_coding |
| 175093 | enst00000567057 | sg00000198931 | aprt-206 | 16 | 88809469 | 88810268 | - | lnc_RNA | retained_intron |
| 175223 | enst00000568575 | sg00000198931 | aprt-210 | 16 | 88809680 | 88810398 | - | lnc_RNA | retained_intron |
| 176705 | enst00000562464 | sg00000198931 | aprt-203 | 16 | 88809736 | 88811880 | - | lnc_RNA | retained_intron |
| 176722 | enst00000569616 | sg00000198931 | aprt-211 | 16 | 88809518 | 88811897 | - | mRNA | protein_coding |
| 176745 | enst00000563655 | sg00000198931 | aprt-204 | 16 | 88809472 | 88811920 | - | mRNA | protein_coding |
| 176745 | enst00000564858 | sg00000198931 | aprt-205 | 16 | 88811174 | 88811920 | - | lnc_RNA | retained_intron |
| 176748 | enst00000567713 | sg00000198931 | aprt-208 | 16 | 88809411 | 88811923 | - | mRNA | protein_coding |
| 176750 | enst00000426324 | sg00000198931 | aprt-202 | 16 | 88809469 | 88811925 | - | mRNA | protein_coding |
| 176753 | enst00000567391 | sg00000198931 | aprt-207 | 16 | 88809469 | 88811928 | - | mRNA | nonsense_mediated_decay |
| 176753 | enst00000378364 | sg00000198931 | aprt-201 | 16 | 88809339 | 88811928 | - | mRNA | protein_coding |
| 176762 | enst00000568319 | sg00000198931 | aprt-209 | 16 | 88809469 | 88811937 | - | mRNA | nonsense_mediated_decay |
| -180389 | enst00000562437 | sg00000179588 | zfpm1-203 | 16 | 88453627 | 88516646 | + | mRNA | protein_coding |
| -180389 | enst00000563351 | sg00000179588 | zfpm1-204 | 16 | 88453627 | 88516629 | + | mRNA | protein_coding |
| -180391 | enst00000569086 | sg00000179588 | zfpm1-205 | 16 | 88453625 | 88516551 | + | mRNA | protein_coding |
| -180410 | enst00000562417 | sg00000179588 | zfpm1-202 | 16 | 88453606 | 88489349 | + | lnc_RNA | retained_intron |
| -180736 | enst00000319555 | sg00000179588 | zfpm1-201 | 16 | 88453280 | 88537031 | + | mRNA | protein_coding |
| 191941 | enst00000564263 | sg00000141012 | galns-206 | 16 | 88824789 | 88827116 | - | lnc_RNA | retained_intron |
| 202674 | enst00000562931 | sg00000141012 | galns-205 | 16 | 88832034 | 88837849 | - | lnc_RNA | processed_transcript |
| 202714 | enst00000566563 | sg00000141012 | galns-208 | 16 | 88835729 | 88837889 | - | lnc_RNA | retained_intron |
| 203747 | enst00000561812 | sg00000141012 | galns-202 | 16 | 88836241 | 88838922 | - | lnc_RNA | processed_transcript |
| -206545 | enst00000437464 | sg00000225614 | znf469-201 | 16 | 88427471 | 88440757 | + | mRNA | protein_coding |
| 206870 | enst00000567779 | sg00000141012 | galns-210 | 16 | 88840698 | 88842045 | - | lnc_RNA | retained_intron |
| 210449 | enst00000562593 | sg00000141012 | galns-203 | 16 | 88813735 | 88845624 | - | lnc_RNA | retained_intron |
| 221045 | enst00000564365 | sg00000167515 | trappc2l-206 | 16 | 88856220 | 88861415 | + | mRNA | protein_coding |
| 221400 | enst00000562831 | sg00000141012 | galns-204 | 16 | 88835755 | 88856575 | - | mRNA | protein_coding |
| 221651 | enst00000567525 | sg00000141012 | galns-209 | 16 | 88813736 | 88856826 | - | mRNA | nonsense_mediated_decay |
| 221651 | enst00000568613 | sg00000141012 | galns-212 | 16 | 88814323 | 88856826 | - | mRNA | nonsense_mediated_decay |
| 221667 | enst00000565364 | sg00000141012 | galns-207 | 16 | 88840335 | 88856842 | - | lnc_RNA | processed_transcript |
| 221756 | enst00000569433 | sg00000141012 | galns-213 | 16 | 88855753 | 88856931 | - | mRNA | protein_coding |
| 221772 | enst00000268695 | sg00000141012 | galns-201 | 16 | 88813734 | 88856947 | - | mRNA | protein_coding |
| 221795 | enst00000568311 | sg00000141012 | galns-211 | 16 | 88855128 | 88856970 | - | mRNA | protein_coding |
| 221911 | enst00000567895 | sg00000167515 | trappc2l-213 | 16 | 88857086 | 88861351 | + | mRNA | protein_coding |
| 221911 | enst00000301021 | sg00000167515 | trappc2l-201 | 16 | 88857086 | 88862686 | + | mRNA | protein_coding |
| 221923 | enst00000564547 | sg00000167515 | trappc2l-208 | 16 | 88857098 | 88859512 | + | lnc_RNA | retained_intron |
| 221923 | enst00000625770 | sg00000167515 | trappc2l-215 | 16 | 88857098 | 88859368 | + | mRNA | protein_coding |
| 221952 | enst00000565504 | sg00000167515 | trappc2l-211 | 16 | 88857127 | 88862676 | + | mRNA | protein_coding |
| 221952 | enst00000562792 | sg00000167515 | trappc2l-204 | 16 | 88857127 | 88859729 | + | mRNA | nonsense_mediated_decay |
| 221956 | enst00000565205 | sg00000167515 | trappc2l-209 | 16 | 88857131 | 88861287 | + | mRNA | nonsense_mediated_decay |
| 221960 | enst00000567312 | sg00000167515 | trappc2l-212 | 16 | 88857135 | 88861112 | + | mRNA | protein_coding |
| 221966 | enst00000568583 | sg00000167515 | trappc2l-214 | 16 | 88857141 | 88861309 | + | mRNA | protein_coding |
| 221969 | enst00000564404 | sg00000167515 | trappc2l-207 | 16 | 88857144 | 88861110 | + | mRNA | nonsense_mediated_decay |
| 221993 | enst00000561840 | sg00000167515 | trappc2l-202 | 16 | 88857168 | 88861049 | + | mRNA | protein_coding |
| 223442 | enst00000565309 | sg00000167515 | trappc2l-210 | 16 | 88858617 | 88860186 | + | lnc_RNA | retained_intron |
| 224126 | enst00000562125 | sg00000167515 | trappc2l-203 | 16 | 88859301 | 88861105 | + | lnc_RNA | retained_intron |
| 224596 | enst00000563514 | sg00000167515 | trappc2l-205 | 16 | 88859771 | 88861130 | + | lnc_RNA | retained_intron |
| 231443 | enst00000419291 | sg00000205022 | pabpn1l-202 | 16 | 88863333 | 88866618 | - | mRNA | protein_coding |
| 231485 | enst00000547152 | sg00000205022 | pabpn1l-203 | 16 | 88863686 | 88866660 | - | mRNA | protein_coding |
| 231485 | enst00000411789 | sg00000205022 | pabpn1l-201 | 16 | 88863686 | 88866660 | - | mRNA | protein_coding |
| 244861 | enst00000563920 | sg00000129993 | cbfa2t3-206 | 16 | 88876228 | 88880036 | - | lnc_RNA | retained_intron |
| 245863 | enst00000562405 | sg00000259881 | ac092384.2-201 | 16 | 88881038 | 88883919 | + | lnc_RNA | lncrna |
| 245982 | enst00000563856 | sg00000129993 | cbfa2t3-205 | 16 | 88875525 | 88881157 | - | lnc_RNA | retained_intron |
| 246082 | enst00000562574 | sg00000259881 | ac092384.2-202 | 16 | 88881257 | 88883715 | + | lnc_RNA | lncrna |
| 246138 | enst00000566868 | sg00000129993 | cbfa2t3-208 | 16 | 88879430 | 88881313 | - | mRNA | nonsense_mediated_decay |
| 246280 | enst00000569249 | sg00000259881 | ac092384.2-203 | 16 | 88881455 | 88883926 | + | lnc_RNA | lncrna |
| 248097 | enst00000565053 | sg00000259881 | ac092384.2-204 | 16 | 88883272 | 88887136 | + | lnc_RNA | lncrna |
| -251027 | enst00000565624 | sg00000225614 | znf469-202 | 16 | 88382989 | 88440749 | + | mRNA | protein_coding |
| 267340 | enst00000562719 | sg00000129993 | cbfa2t3-203 | 16 | 88892285 | 88902515 | - | mRNA | protein_coding |
| 302581 | enst00000561980 | sg00000261226 | ac092384.3-201 | 16 | 88936779 | 88937756 | - | lnc_RNA | lncrna |
| 304476 | enst00000564646 | sg00000261226 | ac092384.3-202 | 16 | 88936779 | 88939651 | - | lnc_RNA | lncrna |
| 304614 | enst00000378347 | sg00000205018 | ac092384.1-201 | 16 | 88939789 | 88951524 | + | lnc_RNA | lncrna |
| 306023 | enst00000327483 | sg00000129993 | cbfa2t3-202 | 16 | 88874858 | 88941198 | - | mRNA | protein_coding |
| 306025 | enst00000564416 | sg00000129993 | cbfa2t3-207 | 16 | 88898088 | 88941200 | - | mRNA | protein_coding |
| 306634 | enst00000569464 | sg00000129993 | cbfa2t3-210 | 16 | 88881112 | 88941809 | - | mRNA | protein_coding |
| 306669 | enst00000569443 | sg00000129993 | cbfa2t3-209 | 16 | 88892244 | 88941844 | - | mRNA | protein_coding |
| 322600 | enst00000570046 | sg00000129993 | cbfa2t3-211 | 16 | 88901558 | 88957775 | - | mRNA | protein_coding |
| 341905 | enst00000563640 | sg00000129993 | cbfa2t3-204 | 16 | 88892399 | 88977080 | - | mRNA | protein_coding |
| 342032 | enst00000268679 | sg00000129993 | cbfa2t3-201 | 16 | 88874858 | 88977207 | - | mRNA | protein_coding |
| 348857 | enst00000562040 | sg00000259989 | ac135782.2-201 | 16 | 88984032 | 88995369 | + | lnc_RNA | lncrna |
| -399231 | enst00000563190 | sg00000261273 | ac138512.1-201 | 16 | 88234785 | 88302511 | + | lnc_RNA | lncrna |
| 417790 | enst00000537498 | sg00000256982 | ac135782.1-201 | 16 | 89046172 | 89052965 | - | lnc_RNA | lncrna |
| 417791 | enst00000669920 | sg00000256982 | ac135782.1-202 | 16 | 89046231 | 89052966 | - | lnc_RNA | lncrna |
| -439735 | enst00000569362 | sg00000260420 | linc02182-201 | 16 | 88194281 | 88195217 | + | lnc_RNA | lncrna |
| -440349 | enst00000568587 | sg00000261816 | ac134312.6-201 | 16 | 88191486 | 88193667 | - | lnc_RNA | lncrna |
| -447087 | enst00000562705 | sg00000261327 | ac134312.5-202 | 16 | 88178049 | 88186929 | - | lnc_RNA | lncrna |
| -447213 | enst00000661363 | sg00000261327 | ac134312.5-203 | 16 | 88177313 | 88186803 | - | lnc_RNA | lncrna |
| -447411 | enst00000665557 | sg00000260420 | linc02182-202 | 16 | 88186605 | 88195202 | + | lnc_RNA | lncrna |
| 453200 | enst00000537895 | sg00000176715 | acsf3-209 | 16 | 89088375 | 89114473 | + | mRNA | protein_coding |
| -455406 | enst00000568031 | sg00000261327 | ac134312.5-201 | 16 | 88177298 | 88178610 | - | lnc_RNA | lncrna |
| -456727 | enst00000563521 | sg00000260162 | ac134312.2-201 | 16 | 88177289 | 88178646 | + | lnc_RNA | lncrna |
| 458677 | enst00000317447 | sg00000176715 | acsf3-201 | 16 | 89093852 | 89156233 | + | mRNA | protein_coding |
| 458677 | enst00000614302 | sg00000176715 | acsf3-218 | 16 | 89093852 | 89156233 | + | mRNA | protein_coding |
| 458680 | enst00000537290 | sg00000176715 | acsf3-208 | 16 | 89093855 | 89102648 | + | mRNA | protein_coding |
| 458693 | enst00000540697 | sg00000176715 | acsf3-211 | 16 | 89093868 | 89133262 | + | mRNA | protein_coding |
| 458708 | enst00000406948 | sg00000176715 | acsf3-204 | 16 | 89093883 | 89154589 | + | mRNA | protein_coding |
| 458723 | enst00000378345 | sg00000176715 | acsf3-202 | 16 | 89093898 | 89154588 | + | mRNA | protein_coding |
| 458729 | enst00000541755 | sg00000176715 | acsf3-212 | 16 | 89093904 | 89100767 | + | mRNA | protein_coding |
| 463536 | enst00000542688 | sg00000176715 | acsf3-213 | 16 | 89098711 | 89154540 | + | mRNA | nonsense_mediated_decay |
| 465487 | enst00000649953 | sg00000176715 | acsf3-219 | 16 | 89100662 | 89164121 | + | mRNA | nonsense_mediated_decay |
| 467177 | enst00000544543 | sg00000176715 | acsf3-215 | 16 | 89102352 | 89145400 | + | mRNA | protein_coding |
| 467438 | enst00000538340 | sg00000176715 | acsf3-210 | 16 | 89102613 | 89122392 | + | mRNA | protein_coding |
| 467521 | enst00000543676 | sg00000176715 | acsf3-214 | 16 | 89102696 | 89122832 | + | mRNA | protein_coding |
| 477026 | enst00000562204 | sg00000176715 | acsf3-216 | 16 | 89112201 | 89146044 | + | lnc_RNA | processed_transcript |
| 480104 | enst00000562782 | sg00000261546 | ac135782.3-201 | 16 | 89113175 | 89115279 | - | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc