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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #96 | 1 | 1332513 | 1333703 | 1190 | 3 | 41 | 1.10628e-17 | 1.14603e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -1233 | enst00000339381 | sg00000169962 | tas1r3-201 | 1 | 1331280 | 1335314 | + | mRNA | protein_coding |
| 5719 | enst00000632445 | sg00000107404 | dvl1-206 | 1 | 1336412 | 1339422 | - | mRNA | protein_coding |
| 6005 | enst00000616525 | sg00000284372 | mir6808-201 | 1 | 1339650 | 1339708 | - | miRNA | mirna |
| 6349 | enst00000631679 | sg00000107404 | dvl1-205 | 1 | 1337023 | 1340052 | - | mRNA | protein_coding |
| 6487 | enst00000634054 | sg00000107404 | dvl1-208 | 1 | 1338334 | 1340190 | - | lnc_RNA | retained_intron |
| 6662 | enst00000633096 | sg00000107404 | dvl1-207 | 1 | 1339492 | 1340365 | - | lnc_RNA | retained_intron |
| -7272 | enst00000488011 | sg00000224051 | cptp-203 | 1 | 1325241 | 1327471 | + | mRNA | protein_coding |
| -7711 | enst00000343938 | sg00000224051 | cptp-201 | 1 | 1324802 | 1328896 | + | mRNA | protein_coding |
| -7757 | enst00000464957 | sg00000224051 | cptp-202 | 1 | 1324756 | 1327994 | + | lnc_RNA | processed_transcript |
| -7822 | enst00000435064 | sg00000127054 | ints11-208 | 1 | 1311597 | 1324691 | - | mRNA | protein_coding |
| -7826 | enst00000545578 | sg00000127054 | ints11-248 | 1 | 1311585 | 1324687 | - | mRNA | protein_coding |
| -7826 | enst00000498173 | sg00000127054 | ints11-223 | 1 | 1318681 | 1324687 | - | lnc_RNA | retained_intron |
| -7826 | enst00000540437 | sg00000127054 | ints11-247 | 1 | 1311585 | 1324687 | - | mRNA | protein_coding |
| -7826 | enst00000618806 | sg00000127054 | ints11-249 | 1 | 1311585 | 1324687 | - | mRNA | protein_coding |
| -7826 | enst00000620829 | sg00000127054 | ints11-250 | 1 | 1311585 | 1324687 | - | mRNA | protein_coding |
| -7840 | enst00000411962 | sg00000127054 | ints11-202 | 1 | 1311601 | 1324673 | - | mRNA | protein_coding |
| -7842 | enst00000534345 | sg00000127054 | ints11-246 | 1 | 1319306 | 1324671 | - | mRNA | protein_coding |
| -7842 | enst00000527719 | sg00000127054 | ints11-235 | 1 | 1314916 | 1324671 | - | mRNA | protein_coding |
| -7843 | enst00000450926 | sg00000127054 | ints11-209 | 1 | 1311819 | 1324670 | - | mRNA | protein_coding |
| -7847 | enst00000527098 | sg00000127054 | ints11-233 | 1 | 1311823 | 1324666 | - | mRNA | nonsense_mediated_decay |
| -7847 | enst00000429572 | sg00000127054 | ints11-205 | 1 | 1318679 | 1324666 | - | mRNA | protein_coding |
| -7853 | enst00000498476 | sg00000127054 | ints11-224 | 1 | 1319403 | 1324660 | - | mRNA | protein_coding |
| -7853 | enst00000526332 | sg00000127054 | ints11-230 | 1 | 1314827 | 1324660 | - | mRNA | protein_coding |
| -7853 | enst00000531019 | sg00000127054 | ints11-239 | 1 | 1319381 | 1324660 | - | mRNA | nonsense_mediated_decay |
| -7854 | enst00000530031 | sg00000127054 | ints11-237 | 1 | 1314918 | 1324659 | - | mRNA | protein_coding |
| -7855 | enst00000526797 | sg00000127054 | ints11-231 | 1 | 1314826 | 1324658 | - | mRNA | nonsense_mediated_decay |
| -7855 | enst00000526904 | sg00000127054 | ints11-232 | 1 | 1315146 | 1324658 | - | lnc_RNA | retained_intron |
| -7855 | enst00000493534 | sg00000127054 | ints11-220 | 1 | 1319060 | 1324658 | - | lnc_RNA | processed_transcript |
| -7855 | enst00000530233 | sg00000127054 | ints11-238 | 1 | 1322771 | 1324658 | - | lnc_RNA | retained_intron |
| -7860 | enst00000419704 | sg00000127054 | ints11-203 | 1 | 1311606 | 1324653 | - | mRNA | protein_coding |
| -7863 | enst00000458452 | sg00000127054 | ints11-210 | 1 | 1311606 | 1324650 | - | mRNA | nonsense_mediated_decay |
| -7864 | enst00000490853 | sg00000127054 | ints11-219 | 1 | 1319381 | 1324649 | - | lnc_RNA | processed_transcript |
| -7865 | enst00000528879 | sg00000127054 | ints11-236 | 1 | 1312284 | 1324648 | - | mRNA | nonsense_mediated_decay |
| -7871 | enst00000532952 | sg00000127054 | ints11-244 | 1 | 1319347 | 1324642 | - | lnc_RNA | processed_transcript |
| -7876 | enst00000526113 | sg00000127054 | ints11-229 | 1 | 1315004 | 1324637 | - | lnc_RNA | retained_intron |
| -7876 | enst00000421495 | sg00000127054 | ints11-204 | 1 | 1311606 | 1324637 | - | mRNA | protein_coding |
| -7883 | enst00000434694 | sg00000127054 | ints11-207 | 1 | 1313745 | 1324630 | - | mRNA | protein_coding |
| -7884 | enst00000488042 | sg00000127054 | ints11-218 | 1 | 1314413 | 1324629 | - | lnc_RNA | retained_intron |
| -7885 | enst00000532772 | sg00000127054 | ints11-243 | 1 | 1311627 | 1324628 | - | mRNA | nonsense_mediated_decay |
| -7888 | enst00000430786 | sg00000127054 | ints11-206 | 1 | 1314878 | 1324625 | - | mRNA | nonsense_mediated_decay |
| -7892 | enst00000323275 | sg00000127054 | ints11-201 | 1 | 1311600 | 1324621 | - | lnc_RNA | retained_intron |
| -7900 | enst00000525285 | sg00000127054 | ints11-226 | 1 | 1320478 | 1324613 | - | mRNA | nonsense_mediated_decay |
| -7902 | enst00000496353 | sg00000127054 | ints11-221 | 1 | 1318697 | 1324611 | - | lnc_RNA | retained_intron |
| -7910 | enst00000470679 | sg00000127054 | ints11-215 | 1 | 1319470 | 1324603 | - | mRNA | nonsense_mediated_decay |
| -11608 | enst00000525603 | sg00000127054 | ints11-227 | 1 | 1315560 | 1320905 | - | lnc_RNA | retained_intron |
| -13167 | enst00000531377 | sg00000127054 | ints11-242 | 1 | 1312787 | 1319346 | - | mRNA | nonsense_mediated_decay |
| -13824 | enst00000444968 | sg00000240731 | al139287.1-201 | 1 | 1317581 | 1318689 | - | lnc_RNA | lncrna |
| -15063 | enst00000462432 | sg00000127054 | ints11-212 | 1 | 1311602 | 1317450 | - | lnc_RNA | processed_transcript |
| 15252 | enst00000472445 | sg00000107404 | dvl1-203 | 1 | 1341770 | 1348955 | - | lnc_RNA | retained_intron |
| 15409 | enst00000378891 | sg00000107404 | dvl1-202 | 1 | 1335276 | 1349112 | - | mRNA | protein_coding |
| 15432 | enst00000610709 | sg00000107404 | dvl1-204 | 1 | 1335279 | 1349135 | - | mRNA | protein_coding |
| 15715 | enst00000378888 | sg00000107404 | dvl1-201 | 1 | 1335278 | 1349418 | - | mRNA | protein_coding |
| -16816 | enst00000533916 | sg00000127054 | ints11-245 | 1 | 1314313 | 1315697 | - | lnc_RNA | retained_intron |
| -16905 | enst00000527383 | sg00000127054 | ints11-234 | 1 | 1312939 | 1315608 | - | mRNA | nonsense_mediated_decay |
| -16912 | enst00000467408 | sg00000127054 | ints11-213 | 1 | 1313546 | 1315601 | - | lnc_RNA | retained_intron |
| -17080 | enst00000470030 | sg00000127054 | ints11-214 | 1 | 1311585 | 1315433 | - | lnc_RNA | retained_intron |
| -17343 | enst00000478641 | sg00000127054 | ints11-216 | 1 | 1311606 | 1315170 | - | lnc_RNA | retained_intron |
| -17372 | enst00000531020 | sg00000127054 | ints11-240 | 1 | 1314136 | 1315141 | - | lnc_RNA | retained_intron |
| -17849 | enst00000531292 | sg00000127054 | ints11-241 | 1 | 1313059 | 1314664 | - | lnc_RNA | retained_intron |
| -18688 | enst00000485710 | sg00000127054 | ints11-217 | 1 | 1312080 | 1313825 | - | lnc_RNA | retained_intron |
| -18733 | enst00000461514 | sg00000127054 | ints11-211 | 1 | 1312260 | 1313780 | - | lnc_RNA | retained_intron |
| -18748 | enst00000525164 | sg00000127054 | ints11-225 | 1 | 1312265 | 1313765 | - | lnc_RNA | retained_intron |
| -18763 | enst00000525769 | sg00000127054 | ints11-228 | 1 | 1312286 | 1313750 | - | lnc_RNA | retained_intron |
| -19813 | enst00000497304 | sg00000127054 | ints11-222 | 1 | 1311598 | 1312700 | - | lnc_RNA | retained_intron |
| -19947 | enst00000620702 | sg00000283712 | mir6727-201 | 1 | 1312502 | 1312566 | - | miRNA | mirna |
| 20544 | enst00000478517 | sg00000162576 | mxra8-210 | 1 | 1353215 | 1354247 | - | lnc_RNA | retained_intron |
| 20561 | enst00000474033 | sg00000162576 | mxra8-207 | 1 | 1352689 | 1354264 | - | lnc_RNA | retained_intron |
| 20771 | enst00000473097 | sg00000162576 | mxra8-206 | 1 | 1353192 | 1354474 | - | lnc_RNA | retained_intron |
| 21313 | enst00000476718 | sg00000162576 | mxra8-208 | 1 | 1353439 | 1355016 | - | lnc_RNA | retained_intron |
| 21809 | enst00000464351 | sg00000162576 | mxra8-205 | 1 | 1355004 | 1355512 | - | lnc_RNA | retained_intron |
| 21809 | enst00000460473 | sg00000162576 | mxra8-204 | 1 | 1355083 | 1355512 | - | lnc_RNA | retained_intron |
| -22904 | enst00000472541 | sg00000131584 | acap3-208 | 1 | 1298744 | 1309609 | - | lnc_RNA | retained_intron |
| -23278 | enst00000493657 | sg00000169972 | pusl1-205 | 1 | 1309235 | 1311676 | + | lnc_RNA | retained_intron |
| -23692 | enst00000467712 | sg00000169972 | pusl1-203 | 1 | 1308821 | 1311069 | + | mRNA | protein_coding |
| -23725 | enst00000463758 | sg00000169972 | pusl1-202 | 1 | 1308788 | 1309840 | + | lnc_RNA | retained_intron |
| -23902 | enst00000470520 | sg00000169972 | pusl1-204 | 1 | 1308611 | 1311028 | + | lnc_RNA | processed_transcript |
| -23916 | enst00000379031 | sg00000169972 | pusl1-201 | 1 | 1308597 | 1311677 | + | mRNA | protein_coding |
| -24583 | enst00000354700 | sg00000131584 | acap3-202 | 1 | 1292391 | 1307930 | - | mRNA | protein_coding |
| -24683 | enst00000479108 | sg00000131584 | acap3-211 | 1 | 1301856 | 1307830 | - | lnc_RNA | retained_intron |
| -24692 | enst00000354980 | sg00000131584 | acap3-203 | 1 | 1300196 | 1307821 | - | mRNA | nonsense_mediated_decay |
| -24695 | enst00000438966 | sg00000131584 | acap3-205 | 1 | 1303210 | 1307818 | - | lnc_RNA | processed_transcript |
| 24832 | enst00000309212 | sg00000162576 | mxra8-201 | 1 | 1352691 | 1358535 | - | mRNA | protein_coding |
| 24840 | enst00000445648 | sg00000162576 | mxra8-203 | 1 | 1352692 | 1358543 | - | mRNA | protein_coding |
| 25091 | enst00000342753 | sg00000162576 | mxra8-202 | 1 | 1352689 | 1358794 | - | mRNA | protein_coding |
| -26584 | enst00000492936 | sg00000131584 | acap3-212 | 1 | 1292390 | 1305929 | - | lnc_RNA | retained_intron |
| -27612 | enst00000478065 | sg00000131584 | acap3-210 | 1 | 1301448 | 1304901 | - | lnc_RNA | retained_intron |
| 28074 | enst00000477278 | sg00000162576 | mxra8-209 | 1 | 1352692 | 1361777 | - | mRNA | protein_coding |
| -29253 | enst00000353662 | sg00000131584 | acap3-201 | 1 | 1293564 | 1303260 | - | mRNA | protein_coding |
| -32896 | enst00000476572 | sg00000131584 | acap3-209 | 1 | 1296466 | 1299617 | - | lnc_RNA | retained_intron |
| -33558 | enst00000467278 | sg00000131584 | acap3-206 | 1 | 1292870 | 1298955 | - | lnc_RNA | retained_intron |
| -34248 | enst00000379037 | sg00000131584 | acap3-204 | 1 | 1296436 | 1298265 | - | lnc_RNA | processed_transcript |
| -34272 | enst00000493992 | sg00000131584 | acap3-213 | 1 | 1297837 | 1298241 | - | lnc_RNA | retained_intron |
| -36343 | enst00000613751 | sg00000278073 | mir6726-201 | 1 | 1296110 | 1296170 | - | miRNA | mirna |
| -37505 | enst00000470659 | sg00000131584 | acap3-207 | 1 | 1294499 | 1295008 | - | lnc_RNA | retained_intron |
| 41441 | enst00000489799 | sg00000175756 | aurkaip1-205 | 1 | 1374244 | 1375144 | - | lnc_RNA | processed_transcript |
| 41454 | enst00000338370 | sg00000175756 | aurkaip1-203 | 1 | 1373730 | 1375157 | - | mRNA | protein_coding |
| 41456 | enst00000496905 | sg00000175756 | aurkaip1-206 | 1 | 1374438 | 1375159 | - | lnc_RNA | processed_transcript |
| 41466 | enst00000321751 | sg00000175756 | aurkaip1-201 | 1 | 1373732 | 1375169 | - | mRNA | protein_coding |
| 41470 | enst00000378853 | sg00000175756 | aurkaip1-204 | 1 | 1373737 | 1375173 | - | mRNA | protein_coding |
| 41792 | enst00000338338 | sg00000175756 | aurkaip1-202 | 1 | 1373730 | 1375495 | - | mRNA | protein_coding |
| 44963 | enst00000435351 | sg00000223663 | ndufb4p8-201 | 1 | 1378666 | 1379032 | + | pseudogenic_transcript | processed_pseudogene |
| -45404 | enst00000379099 | sg00000162572 | scnn1d-203 | 1 | 1287109 | 1290943 | + | mRNA | protein_coding |
| -50349 | enst00000467651 | sg00000162572 | scnn1d-207 | 1 | 1282164 | 1285597 | + | lnc_RNA | processed_transcript |
| -50404 | enst00000325425 | sg00000162572 | scnn1d-201 | 1 | 1282109 | 1292024 | + | mRNA | protein_coding |
| -50588 | enst00000470022 | sg00000162572 | scnn1d-208 | 1 | 1281925 | 1286168 | + | mRNA | protein_coding |
| -51289 | enst00000400928 | sg00000162572 | scnn1d-206 | 1 | 1281224 | 1292029 | + | mRNA | protein_coding |
| -51925 | enst00000338555 | sg00000162572 | scnn1d-202 | 1 | 1280588 | 1292024 | + | mRNA | protein_coding |
| -52041 | enst00000379101 | sg00000162572 | scnn1d-204 | 1 | 1280472 | 1291373 | + | mRNA | nonsense_mediated_decay |
| -52077 | enst00000379116 | sg00000162572 | scnn1d-205 | 1 | 1280436 | 1292025 | + | mRNA | protein_coding |
| 55010 | enst00000463260 | sg00000221978 | ccnl2-206 | 1 | 1386495 | 1388713 | - | lnc_RNA | retained_intron |
| 57197 | enst00000492998 | sg00000221978 | ccnl2-217 | 1 | 1387543 | 1390900 | - | lnc_RNA | retained_intron |
| 57240 | enst00000408952 | sg00000221978 | ccnl2-203 | 1 | 1386503 | 1390943 | - | mRNA | protein_coding |
| -57276 | enst00000453732 | sg00000230415 | linc01786-202 | 1 | 1275237 | 1279393 | + | lnc_RNA | lncrna |
| -57290 | enst00000434139 | sg00000230415 | linc01786-201 | 1 | 1275223 | 1280420 | + | lnc_RNA | lncrna |
| 57301 | enst00000480646 | sg00000221978 | ccnl2-212 | 1 | 1389346 | 1391004 | - | lnc_RNA | retained_intron |
| 57393 | enst00000480479 | sg00000221978 | ccnl2-211 | 1 | 1385711 | 1391096 | - | lnc_RNA | retained_intron |
| 57946 | enst00000505849 | sg00000221978 | ccnl2-220 | 1 | 1387122 | 1391649 | - | lnc_RNA | processed_transcript |
| 58051 | enst00000482365 | sg00000221978 | ccnl2-214 | 1 | 1386502 | 1391754 | - | lnc_RNA | retained_intron |
| -58628 | enst00000349431 | sg00000160087 | ube2j2-202 | 1 | 1254470 | 1273885 | - | mRNA | protein_coding |
| -58649 | enst00000464036 | sg00000160087 | ube2j2-210 | 1 | 1255048 | 1273864 | - | mRNA | nonsense_mediated_decay |
| -58658 | enst00000400929 | sg00000160087 | ube2j2-204 | 1 | 1254985 | 1273855 | - | mRNA | protein_coding |
| -58659 | enst00000347370 | sg00000160087 | ube2j2-201 | 1 | 1253914 | 1273854 | - | mRNA | protein_coding |
| -58659 | enst00000477894 | sg00000160087 | ube2j2-215 | 1 | 1257049 | 1273854 | - | mRNA | nonsense_mediated_decay |
| -58659 | enst00000502382 | sg00000160087 | ube2j2-218 | 1 | 1257270 | 1273854 | - | mRNA | protein_coding |
| -58660 | enst00000450390 | sg00000160087 | ube2j2-208 | 1 | 1253909 | 1273853 | - | mRNA | nonsense_mediated_decay |
| -58664 | enst00000473215 | sg00000160087 | ube2j2-214 | 1 | 1255268 | 1273849 | - | mRNA | nonsense_mediated_decay |
| -58669 | enst00000435198 | sg00000160087 | ube2j2-207 | 1 | 1255395 | 1273844 | - | mRNA | protein_coding |
| -58676 | enst00000461142 | sg00000160087 | ube2j2-209 | 1 | 1262853 | 1273837 | - | lnc_RNA | retained_intron |
| -58676 | enst00000422076 | sg00000160087 | ube2j2-206 | 1 | 1257227 | 1273837 | - | mRNA | protein_coding |
| -58680 | enst00000400930 | sg00000160087 | ube2j2-205 | 1 | 1255178 | 1273833 | - | mRNA | protein_coding |
| -58680 | enst00000503294 | sg00000160087 | ube2j2-219 | 1 | 1257011 | 1273833 | - | mRNA | nonsense_mediated_decay |
| -58686 | enst00000509720 | sg00000160087 | ube2j2-220 | 1 | 1255439 | 1273827 | - | mRNA | protein_coding |
| -58698 | enst00000466752 | sg00000160087 | ube2j2-211 | 1 | 1256992 | 1273815 | - | mRNA | nonsense_mediated_decay |
| -58723 | enst00000491779 | sg00000160087 | ube2j2-217 | 1 | 1256049 | 1273790 | - | lnc_RNA | processed_transcript |
| -58787 | enst00000360466 | sg00000160087 | ube2j2-203 | 1 | 1255164 | 1273726 | - | mRNA | protein_coding |
| 58822 | enst00000418865 | sg00000221978 | ccnl2-204 | 1 | 1386713 | 1392525 | - | lnc_RNA | retained_intron |
| 59013 | enst00000469113 | sg00000221978 | ccnl2-208 | 1 | 1388023 | 1392716 | - | lnc_RNA | processed_transcript |
| -59042 | enst00000488418 | sg00000160087 | ube2j2-216 | 1 | 1267862 | 1273471 | - | mRNA | protein_coding |
| 64584 | enst00000473872 | sg00000221978 | ccnl2-210 | 1 | 1393080 | 1398287 | - | lnc_RNA | retained_intron |
| 64584 | enst00000463895 | sg00000221978 | ccnl2-207 | 1 | 1395185 | 1398287 | - | lnc_RNA | retained_intron |
| 64601 | enst00000482621 | sg00000221978 | ccnl2-215 | 1 | 1386482 | 1398304 | - | mRNA | nonsense_mediated_decay |
| 64663 | enst00000471930 | sg00000221978 | ccnl2-209 | 1 | 1391153 | 1398366 | - | lnc_RNA | processed_transcript |
| 65253 | enst00000497013 | sg00000221978 | ccnl2-219 | 1 | 1395437 | 1398956 | - | mRNA | protein_coding |
| 65606 | enst00000496007 | sg00000221978 | ccnl2-218 | 1 | 1386499 | 1399309 | - | lnc_RNA | retained_intron |
| 65608 | enst00000481223 | sg00000221978 | ccnl2-213 | 1 | 1386708 | 1399311 | - | mRNA | nonsense_mediated_decay |
| 65614 | enst00000408918 | sg00000221978 | ccnl2-202 | 1 | 1392288 | 1399317 | - | mRNA | protein_coding |
| 65622 | enst00000425598 | sg00000221978 | ccnl2-205 | 1 | 1393444 | 1399325 | - | mRNA | nonsense_mediated_decay |
| 65625 | enst00000488340 | sg00000221978 | ccnl2-216 | 1 | 1387232 | 1399328 | - | mRNA | nonsense_mediated_decay |
| 65632 | enst00000400809 | sg00000221978 | ccnl2-201 | 1 | 1385711 | 1399335 | - | mRNA | protein_coding |
| 65817 | enst00000448629 | sg00000224870 | mrpl20-as1-204 | 1 | 1399520 | 1402036 | + | lnc_RNA | lncrna |
| 65817 | enst00000659048 | sg00000224870 | mrpl20-as1-209 | 1 | 1399520 | 1402019 | + | lnc_RNA | lncrna |
| 65824 | enst00000444362 | sg00000224870 | mrpl20-as1-202 | 1 | 1399527 | 1402046 | + | lnc_RNA | lncrna |
| 65827 | enst00000418833 | sg00000224870 | mrpl20-as1-201 | 1 | 1399530 | 1402026 | + | lnc_RNA | retained_intron |
| 65849 | enst00000576232 | sg00000224870 | mrpl20-as1-208 | 1 | 1399552 | 1400608 | + | lnc_RNA | lncrna |
| 65859 | enst00000570344 | sg00000224870 | mrpl20-as1-206 | 1 | 1399562 | 1400544 | + | lnc_RNA | lncrna |
| 65869 | enst00000447725 | sg00000224870 | mrpl20-as1-203 | 1 | 1399572 | 1402006 | + | lnc_RNA | lncrna |
| 66103 | enst00000572242 | sg00000224870 | mrpl20-as1-207 | 1 | 1399806 | 1402033 | + | lnc_RNA | retained_intron |
| 66716 | enst00000453521 | sg00000224870 | mrpl20-as1-205 | 1 | 1400419 | 1402046 | + | lnc_RNA | lncrna |
| -68944 | enst00000471154 | sg00000160087 | ube2j2-213 | 1 | 1257122 | 1263569 | - | lnc_RNA | retained_intron |
| 72049 | enst00000582431 | sg00000264293 | rn7sl657p-201 | 1 | 1405460 | 1405752 | - | ncRNA | misc_rna |
| 72604 | enst00000493287 | sg00000242485 | mrpl20-206 | 1 | 1401913 | 1406307 | - | lnc_RNA | processed_transcript |
| 73295 | enst00000492508 | sg00000242485 | mrpl20-205 | 1 | 1402182 | 1406998 | - | mRNA | protein_coding |
| 73532 | enst00000477686 | sg00000242485 | mrpl20-202 | 1 | 1406249 | 1407235 | - | lnc_RNA | processed_transcript |
| 73565 | enst00000487659 | sg00000242485 | mrpl20-204 | 1 | 1401913 | 1407268 | - | lnc_RNA | retained_intron |
| 73587 | enst00000482352 | sg00000242485 | mrpl20-203 | 1 | 1405109 | 1407290 | - | mRNA | protein_coding |
| 73590 | enst00000344843 | sg00000242485 | mrpl20-201 | 1 | 1401909 | 1407293 | - | mRNA | protein_coding |
| 75393 | enst00000607307 | sg00000272455 | al391244.2-201 | 1 | 1409096 | 1410618 | + | lnc_RNA | lncrna |
| -76178 | enst00000467339 | sg00000160087 | ube2j2-212 | 1 | 1255264 | 1256335 | - | lnc_RNA | processed_transcript |
| -81179 | enst00000565563 | sg00000260179 | al162741.1-201 | 1 | 1249777 | 1251334 | - | lnc_RNA | lncrna |
| -85791 | enst00000330388 | sg00000184163 | c1qtnf12-201 | 1 | 1242453 | 1246722 | - | mRNA | protein_coding |
| 86542 | enst00000428932 | sg00000225905 | al391244.1-201 | 1 | 1420245 | 1422691 | + | lnc_RNA | lncrna |
| 87388 | enst00000454272 | sg00000235098 | ankrd65-203 | 1 | 1418880 | 1421091 | - | mRNA | protein_coding |
| 87557 | enst00000442470 | sg00000235098 | ankrd65-202 | 1 | 1419138 | 1421260 | - | mRNA | protein_coding |
| 87741 | enst00000537107 | sg00000235098 | ankrd65-205 | 1 | 1418422 | 1421444 | - | mRNA | protein_coding |
| 87741 | enst00000520296 | sg00000235098 | ankrd65-204 | 1 | 1418420 | 1421444 | - | mRNA | protein_coding |
| -87789 | enst00000486627 | sg00000184163 | c1qtnf12-205 | 1 | 1243981 | 1244724 | - | lnc_RNA | retained_intron |
| 88066 | enst00000427211 | sg00000235098 | ankrd65-201 | 1 | 1418420 | 1421769 | - | mRNA | protein_coding |
| -88095 | enst00000468365 | sg00000184163 | c1qtnf12-203 | 1 | 1243266 | 1244418 | - | lnc_RNA | retained_intron |
| -89050 | enst00000462849 | sg00000184163 | c1qtnf12-202 | 1 | 1242446 | 1243463 | - | lnc_RNA | retained_intron |
| -89355 | enst00000478606 | sg00000184163 | c1qtnf12-204 | 1 | 1242449 | 1243158 | - | lnc_RNA | retained_intron |
| 92425 | enst00000378821 | sg00000205116 | tmem88b-201 | 1 | 1426128 | 1427787 | + | mRNA | protein_coding |
| 98140 | enst00000434150 | sg00000225285 | linc01770-203 | 1 | 1430550 | 1431843 | - | lnc_RNA | lncrna |
| -100276 | enst00000379198 | sg00000176022 | b3galt6-201 | 1 | 1232237 | 1235041 | + | mRNA | protein_coding |
| -100446 | enst00000660930 | sg00000078808 | sdf4-209 | 1 | 1216909 | 1232067 | - | mRNA | protein_coding |
| -100482 | enst00000465727 | sg00000078808 | sdf4-205 | 1 | 1216931 | 1232031 | - | mRNA | nonsense_mediated_decay |
| -100482 | enst00000263741 | sg00000078808 | sdf4-201 | 1 | 1216931 | 1232031 | - | mRNA | protein_coding |
| -100512 | enst00000360001 | sg00000078808 | sdf4-202 | 1 | 1216908 | 1232001 | - | mRNA | protein_coding |
| -100545 | enst00000459994 | sg00000078808 | sdf4-204 | 1 | 1227272 | 1231968 | - | lnc_RNA | processed_transcript |
| 100785 | enst00000454562 | sg00000225285 | linc01770-204 | 1 | 1430550 | 1434488 | - | lnc_RNA | lncrna |
| 100817 | enst00000417917 | sg00000225285 | linc01770-201 | 1 | 1430664 | 1434520 | - | lnc_RNA | lncrna |
| 100870 | enst00000430109 | sg00000225285 | linc01770-202 | 1 | 1430539 | 1434573 | - | lnc_RNA | lncrna |
| 101158 | enst00000495558 | sg00000179403 | vwa1-204 | 1 | 1434861 | 1437459 | + | mRNA | protein_coding |
| 101820 | enst00000338660 | sg00000179403 | vwa1-201 | 1 | 1435523 | 1440765 | + | mRNA | protein_coding |
| 101987 | enst00000476993 | sg00000179403 | vwa1-203 | 1 | 1435690 | 1442882 | + | mRNA | protein_coding |
| 102032 | enst00000471398 | sg00000179403 | vwa1-202 | 1 | 1435735 | 1437177 | + | mRNA | protein_coding |
| -103720 | enst00000655486 | sg00000078808 | sdf4-208 | 1 | 1217512 | 1228793 | - | mRNA | protein_coding |
| -103917 | enst00000403997 | sg00000078808 | sdf4-203 | 1 | 1218523 | 1228596 | - | mRNA | protein_coding |
| -111162 | enst00000494748 | sg00000078808 | sdf4-207 | 1 | 1216932 | 1221351 | - | lnc_RNA | retained_intron |
| -112220 | enst00000478938 | sg00000078808 | sdf4-206 | 1 | 1216934 | 1220293 | - | lnc_RNA | retained_intron |
| 115986 | enst00000378785 | sg00000215915 | atad3c-201 | 1 | 1449689 | 1470163 | + | mRNA | protein_coding |
| 116211 | enst00000475091 | sg00000215915 | atad3c-202 | 1 | 1449914 | 1455902 | + | mRNA | protein_coding |
| -118360 | enst00000379236 | sg00000186827 | tnfrsf4-201 | 1 | 1211340 | 1214153 | - | mRNA | protein_coding |
| -118375 | enst00000497869 | sg00000186827 | tnfrsf4-203 | 1 | 1211340 | 1214138 | - | lnc_RNA | retained_intron |
| -119015 | enst00000453580 | sg00000186827 | tnfrsf4-202 | 1 | 1212019 | 1213498 | - | lnc_RNA | processed_transcript |
| -125921 | enst00000379268 | sg00000186891 | tnfrsf18-203 | 1 | 1203508 | 1206592 | - | mRNA | protein_coding |
| -125942 | enst00000379265 | sg00000186891 | tnfrsf18-202 | 1 | 1203844 | 1206571 | - | mRNA | protein_coding |
| -125942 | enst00000328596 | sg00000186891 | tnfrsf18-201 | 1 | 1203508 | 1206571 | - | mRNA | protein_coding |
| -126833 | enst00000486728 | sg00000186891 | tnfrsf18-204 | 1 | 1203844 | 1205680 | - | mRNA | protein_coding |
| 128780 | enst00000484537 | sg00000215915 | atad3c-203 | 1 | 1462483 | 1468663 | + | lnc_RNA | retained_intron |
| 138062 | enst00000673477 | sg00000160072 | atad3b-206 | 1 | 1471765 | 1497848 | + | mRNA | protein_coding |
| 138081 | enst00000308647 | sg00000160072 | atad3b-201 | 1 | 1471784 | 1496201 | + | mRNA | protein_coding |
| 144323 | enst00000472194 | sg00000160072 | atad3b-203 | 1 | 1478026 | 1497848 | + | lnc_RNA | retained_intron |
| 145346 | enst00000378736 | sg00000160072 | atad3b-202 | 1 | 1479049 | 1482662 | + | lnc_RNA | processed_transcript |
| -147477 | enst00000486379 | sg00000162571 | ttll10-205 | 1 | 1185036 | 1197475 | + | mRNA | nonsense_mediated_decay |
| 149782 | enst00000485748 | sg00000160072 | atad3b-205 | 1 | 1483485 | 1496202 | + | lnc_RNA | retained_intron |
| 150866 | enst00000474481 | sg00000160072 | atad3b-204 | 1 | 1484569 | 1496201 | + | lnc_RNA | retained_intron |
| -151976 | enst00000514695 | sg00000162571 | ttll10-207 | 1 | 1180537 | 1180884 | + | lnc_RNA | retained_intron |
| -152029 | enst00000460998 | sg00000162571 | ttll10-204 | 1 | 1180484 | 1183927 | + | lnc_RNA | retained_intron |
| -152816 | enst00000379288 | sg00000162571 | ttll10-201 | 1 | 1179697 | 1185864 | + | mRNA | protein_coding |
| -152958 | enst00000379317 | sg00000205231 | ttll10-as1-201 | 1 | 1173056 | 1179555 | - | lnc_RNA | lncrna |
| -158615 | enst00000673999 | sg00000162571 | ttll10-208 | 1 | 1173898 | 1180174 | + | mRNA | protein_coding |
| -158629 | enst00000506177 | sg00000162571 | ttll10-206 | 1 | 1173884 | 1175034 | + | lnc_RNA | processed_transcript |
| -158633 | enst00000379289 | sg00000162571 | ttll10-202 | 1 | 1173880 | 1197936 | + | mRNA | protein_coding |
| -158633 | enst00000379290 | sg00000162571 | ttll10-203 | 1 | 1173880 | 1197936 | + | mRNA | protein_coding |
| -163156 | enst00000606993 | sg00000272141 | al390719.2-201 | 1 | 1169357 | 1170343 | + | lnc_RNA | lncrna |
| -163508 | enst00000362106 | sg00000198976 | mir429-201 | 1 | 1169005 | 1169087 | + | miRNA | mirna |
| -164650 | enst00000384875 | sg00000207607 | mir200a-201 | 1 | 1167863 | 1167952 | + | miRNA | mirna |
| -165409 | enst00000384997 | sg00000207730 | mir200b-201 | 1 | 1167104 | 1167198 | + | miRNA | mirna |
| 169547 | enst00000641974 | sg00000284740 | al645728.2-201 | 1 | 1503250 | 1509452 | + | lnc_RNA | processed_transcript |
| 169879 | enst00000641679 | sg00000284740 | al645728.2-202 | 1 | 1503582 | 1509351 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 178459 | enst00000378756 | sg00000197785 | atad3a-203 | 1 | 1512162 | 1534685 | + | mRNA | protein_coding |
| 178462 | enst00000672388 | sg00000197785 | atad3a-208 | 1 | 1512165 | 1534584 | + | lnc_RNA | retained_intron |
| 178472 | enst00000378755 | sg00000197785 | atad3a-202 | 1 | 1512175 | 1534685 | + | mRNA | protein_coding |
| 178682 | enst00000339113 | sg00000197785 | atad3a-201 | 1 | 1512385 | 1534613 | + | mRNA | nonsense_mediated_decay |
| 178827 | enst00000536055 | sg00000197785 | atad3a-207 | 1 | 1512530 | 1534685 | + | mRNA | protein_coding |
| 183367 | enst00000439513 | sg00000197785 | atad3a-206 | 1 | 1517070 | 1517775 | + | lnc_RNA | retained_intron |
| 183918 | enst00000429957 | sg00000197785 | atad3a-205 | 1 | 1517621 | 1522780 | + | lnc_RNA | retained_intron |
| 190252 | enst00000400830 | sg00000197785 | atad3a-204 | 1 | 1523955 | 1534142 | + | mRNA | protein_coding |
| -195496 | enst00000416774 | sg00000223823 | linc01342-201 | 1 | 1137017 | 1144056 | + | lnc_RNA | lncrna |
| 206647 | enst00000624426 | sg00000205090 | tmem240-203 | 1 | 1539056 | 1540350 | - | mRNA | protein_coding |
| 206750 | enst00000425828 | sg00000205090 | tmem240-202 | 1 | 1535207 | 1540453 | - | mRNA | protein_coding |
| 206921 | enst00000378733 | sg00000205090 | tmem240-201 | 1 | 1534778 | 1540624 | - | mRNA | protein_coding |
| 212784 | enst00000378726 | sg00000160075 | ssu72-204 | 1 | 1541674 | 1546487 | - | lnc_RNA | retained_intron |
| -216152 | enst00000475119 | sg00000131591 | c1orf159-215 | 1 | 1087190 | 1116361 | - | mRNA | protein_coding |
| -216157 | enst00000462097 | sg00000131591 | c1orf159-209 | 1 | 1087139 | 1116356 | - | mRNA | protein_coding |
| -216270 | enst00000482816 | sg00000131591 | c1orf159-218 | 1 | 1083926 | 1116243 | - | lnc_RNA | processed_transcript |
| -216415 | enst00000421241 | sg00000131591 | c1orf159-205 | 1 | 1081823 | 1116098 | - | mRNA | protein_coding |
| -216418 | enst00000379325 | sg00000131591 | c1orf159-203 | 1 | 1081823 | 1116095 | - | mRNA | nonsense_mediated_decay |
| -216418 | enst00000434641 | sg00000131591 | c1orf159-207 | 1 | 1082916 | 1116095 | - | mRNA | protein_coding |
| -216424 | enst00000477196 | sg00000131591 | c1orf159-216 | 1 | 1081825 | 1116089 | - | mRNA | nonsense_mediated_decay |
| -216424 | enst00000480643 | sg00000131591 | c1orf159-217 | 1 | 1091500 | 1116089 | - | mRNA | protein_coding |
| -216424 | enst00000467751 | sg00000131591 | c1orf159-212 | 1 | 1081825 | 1116089 | - | mRNA | nonsense_mediated_decay |
| -216426 | enst00000472741 | sg00000131591 | c1orf159-213 | 1 | 1091046 | 1116087 | - | lnc_RNA | retained_intron |
| -216432 | enst00000379339 | sg00000131591 | c1orf159-204 | 1 | 1081818 | 1116081 | - | mRNA | protein_coding |
| -226386 | enst00000379319 | sg00000131591 | c1orf159-201 | 1 | 1082700 | 1106127 | - | mRNA | protein_coding |
| -234928 | enst00000648183 | sg00000285812 | al390719.3-201 | 1 | 1097585 | 1104598 | + | lnc_RNA | lncrna |
| -239700 | enst00000427787 | sg00000131591 | c1orf159-206 | 1 | 1090406 | 1092813 | - | mRNA | protein_coding |
| -239700 | enst00000442117 | sg00000131591 | c1orf159-208 | 1 | 1087575 | 1092813 | - | mRNA | protein_coding |
| -240219 | enst00000473600 | sg00000131591 | c1orf159-214 | 1 | 1087141 | 1092294 | - | lnc_RNA | retained_intron |
| -240339 | enst00000379320 | sg00000131591 | c1orf159-202 | 1 | 1082235 | 1092174 | - | mRNA | protein_coding |
| 240399 | enst00000647566 | sg00000215014 | al645728.1-201 | 1 | 1574102 | 1575879 | + | lnc_RNA | lncrna |
| -240436 | enst00000465822 | sg00000131591 | c1orf159-211 | 1 | 1081823 | 1092077 | - | lnc_RNA | retained_intron |
| 240881 | enst00000359060 | sg00000160075 | ssu72-202 | 1 | 1560848 | 1574584 | - | mRNA | protein_coding |
| 240884 | enst00000378725 | sg00000160075 | ssu72-203 | 1 | 1544638 | 1574587 | - | lnc_RNA | retained_intron |
| 241160 | enst00000291386 | sg00000160075 | ssu72-201 | 1 | 1541673 | 1574863 | - | mRNA | protein_coding |
| 241272 | enst00000366221 | sg00000215014 | al645728.1-202 | 1 | 1574975 | 1577075 | + | lnc_RNA | retained_intron |
| -244877 | enst00000487177 | sg00000131591 | c1orf159-219 | 1 | 1081825 | 1087636 | - | lnc_RNA | retained_intron |
| -248441 | enst00000464905 | sg00000131591 | c1orf159-210 | 1 | 1082146 | 1084072 | - | lnc_RNA | processed_transcript |
| 250206 | enst00000621860 | sg00000274481 | al691432.3-201 | 1 | 1583510 | 1583909 | - | pseudogenic_transcript | processed_pseudogene |
| -258207 | enst00000453464 | sg00000237330 | rnf223-201 | 1 | 1070967 | 1074306 | - | mRNA | protein_coding |
| 266432 | enst00000422725 | sg00000228594 | fndc10-201 | 1 | 1598012 | 1600135 | - | mRNA | protein_coding |
| 266611 | enst00000658591 | sg00000286989 | al691432.4-201 | 1 | 1600314 | 1602703 | + | lnc_RNA | lncrna |
| -267995 | enst00000451054 | sg00000217801 | al390719.1-206 | 1 | 1064518 | 1066441 | + | lnc_RNA | processed_transcript |
| -268018 | enst00000433695 | sg00000217801 | al390719.1-205 | 1 | 1064495 | 1066274 | + | lnc_RNA | processed_transcript |
| -269225 | enst00000442292 | sg00000273443 | al645608.8-201 | 1 | 1062208 | 1063288 | - | lnc_RNA | lncrna |
| -269434 | enst00000456409 | sg00000217801 | al390719.1-203 | 1 | 1063079 | 1066456 | + | lnc_RNA | processed_transcript |
| -269434 | enst00000412397 | sg00000217801 | al390719.1-204 | 1 | 1063079 | 1069355 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -272779 | enst00000427998 | sg00000217801 | al390719.1-202 | 1 | 1059734 | 1066456 | + | lnc_RNA | processed_transcript |
| -272805 | enst00000394517 | sg00000217801 | al390719.1-201 | 1 | 1059708 | 1066459 | + | lnc_RNA | processed_transcript |
| -277480 | enst00000418300 | sg00000242590 | al645608.5-201 | 1 | 1055033 | 1056116 | + | lnc_RNA | lncrna |
| -280527 | enst00000461111 | sg00000188157 | agrn-202 | 1 | 1051986 | 1056112 | + | lnc_RNA | retained_intron |
| 281712 | enst00000520777 | sg00000197530 | mib2-232 | 1 | 1615415 | 1630605 | + | mRNA | protein_coding |
| 281718 | enst00000355826 | sg00000197530 | mib2-201 | 1 | 1615421 | 1630610 | + | mRNA | protein_coding |
| 281734 | enst00000518681 | sg00000197530 | mib2-231 | 1 | 1615437 | 1630605 | + | mRNA | protein_coding |
| 281740 | enst00000505820 | sg00000197530 | mib2-219 | 1 | 1615443 | 1630605 | + | mRNA | protein_coding |
| 281751 | enst00000479659 | sg00000197530 | mib2-210 | 1 | 1615454 | 1630604 | + | lnc_RNA | retained_intron |
| 281793 | enst00000489635 | sg00000197530 | mib2-214 | 1 | 1615496 | 1630604 | + | mRNA | nonsense_mediated_decay |
| 281811 | enst00000511502 | sg00000197530 | mib2-226 | 1 | 1615514 | 1630604 | + | lnc_RNA | retained_intron |
| 281813 | enst00000477990 | sg00000197530 | mib2-209 | 1 | 1615516 | 1619210 | + | lnc_RNA | retained_intron |
| 281827 | enst00000514363 | sg00000197530 | mib2-230 | 1 | 1615530 | 1625040 | + | mRNA | nonsense_mediated_decay |
| 282092 | enst00000607222 | sg00000272106 | al691432.2-201 | 1 | 1613758 | 1615795 | - | lnc_RNA | lncrna |
| 282176 | enst00000487053 | sg00000197530 | mib2-213 | 1 | 1615879 | 1630604 | + | mRNA | nonsense_mediated_decay |
| 282184 | enst00000502470 | sg00000197530 | mib2-215 | 1 | 1615887 | 1624832 | + | mRNA | nonsense_mediated_decay |
| 282202 | enst00000378712 | sg00000197530 | mib2-203 | 1 | 1615905 | 1630604 | + | mRNA | protein_coding |
| 282211 | enst00000507082 | sg00000197530 | mib2-221 | 1 | 1615914 | 1617898 | + | lnc_RNA | retained_intron |
| 282265 | enst00000463492 | sg00000197530 | mib2-204 | 1 | 1615968 | 1617323 | + | lnc_RNA | processed_transcript |
| 282571 | enst00000510793 | sg00000197530 | mib2-225 | 1 | 1616274 | 1624901 | + | mRNA | protein_coding |
| 282607 | enst00000504599 | sg00000197530 | mib2-217 | 1 | 1616310 | 1630604 | + | mRNA | protein_coding |
| 282608 | enst00000507229 | sg00000197530 | mib2-222 | 1 | 1616311 | 1629163 | + | lnc_RNA | retained_intron |
| 283705 | enst00000503789 | sg00000197530 | mib2-216 | 1 | 1617408 | 1624821 | + | mRNA | protein_coding |
| 283857 | enst00000378708 | sg00000197530 | mib2-202 | 1 | 1617560 | 1630604 | + | mRNA | protein_coding |
| 283874 | enst00000506488 | sg00000197530 | mib2-220 | 1 | 1617577 | 1630532 | + | mRNA | nonsense_mediated_decay |
| -283984 | enst00000492947 | sg00000188157 | agrn-207 | 1 | 1048529 | 1049394 | + | lnc_RNA | retained_intron |
| -285038 | enst00000478677 | sg00000188157 | agrn-205 | 1 | 1047475 | 1047838 | + | lnc_RNA | retained_intron |
| -285312 | enst00000466223 | sg00000188157 | agrn-203 | 1 | 1047201 | 1047865 | + | lnc_RNA | retained_intron |
| -287114 | enst00000479707 | sg00000188157 | agrn-206 | 1 | 1045399 | 1046349 | + | lnc_RNA | retained_intron |
| 289419 | enst00000512004 | sg00000197530 | mib2-228 | 1 | 1623122 | 1624859 | + | lnc_RNA | processed_transcript |
| 289878 | enst00000508455 | sg00000197530 | mib2-224 | 1 | 1623581 | 1624209 | + | lnc_RNA | retained_intron |
| 290099 | enst00000514234 | sg00000197530 | mib2-229 | 1 | 1623802 | 1630604 | + | mRNA | protein_coding |
| 291041 | enst00000467597 | sg00000197530 | mib2-206 | 1 | 1624744 | 1625799 | + | lnc_RNA | retained_intron |
| 291384 | enst00000508148 | sg00000197530 | mib2-223 | 1 | 1625087 | 1625763 | + | lnc_RNA | retained_intron |
| 291864 | enst00000486072 | sg00000197530 | mib2-212 | 1 | 1625567 | 1626929 | + | mRNA | nonsense_mediated_decay |
| 293157 | enst00000505370 | sg00000197530 | mib2-218 | 1 | 1626860 | 1627830 | + | lnc_RNA | retained_intron |
| 293757 | enst00000473511 | sg00000197530 | mib2-208 | 1 | 1627460 | 1629552 | + | lnc_RNA | retained_intron |
| 293819 | enst00000464570 | sg00000197530 | mib2-205 | 1 | 1627522 | 1629270 | + | lnc_RNA | retained_intron |
| 294786 | enst00000483015 | sg00000197530 | mib2-211 | 1 | 1628489 | 1630589 | + | mRNA | protein_coding |
| 295403 | enst00000511910 | sg00000197530 | mib2-227 | 1 | 1629106 | 1630603 | + | lnc_RNA | retained_intron |
| 295770 | enst00000470373 | sg00000197530 | mib2-207 | 1 | 1629473 | 1630605 | + | lnc_RNA | retained_intron |
| -297646 | enst00000469403 | sg00000188157 | agrn-204 | 1 | 1034867 | 1041397 | + | lnc_RNA | retained_intron |
| -298407 | enst00000652369 | sg00000188157 | agrn-210 | 1 | 1034106 | 1056116 | + | mRNA | protein_coding |
| -298407 | enst00000651234 | sg00000188157 | agrn-209 | 1 | 1034106 | 1056116 | + | mRNA | protein_coding |
| 298460 | enst00000472264 | sg00000189409 | mmp23b-204 | 1 | 1632163 | 1633120 | + | mRNA | protein_coding |
| 298470 | enst00000356026 | sg00000189409 | mmp23b-201 | 1 | 1632173 | 1634654 | + | mRNA | protein_coding |
| 298475 | enst00000512731 | sg00000189409 | mmp23b-210 | 1 | 1632178 | 1634474 | + | mRNA | nonsense_mediated_decay |
| 298476 | enst00000378675 | sg00000189409 | mmp23b-202 | 1 | 1632179 | 1634654 | + | mRNA | protein_coding |
| 299080 | enst00000479814 | sg00000189409 | mmp23b-205 | 1 | 1632783 | 1634651 | + | mRNA | protein_coding |
| 299500 | enst00000503792 | sg00000189409 | mmp23b-209 | 1 | 1633203 | 1634568 | + | mRNA | protein_coding |
| 299500 | enst00000435358 | sg00000189409 | mmp23b-203 | 1 | 1633203 | 1634568 | + | mRNA | protein_coding |
| 299976 | enst00000489782 | sg00000189409 | mmp23b-207 | 1 | 1633679 | 1634604 | + | lnc_RNA | retained_intron |
| 300299 | enst00000486400 | sg00000189409 | mmp23b-206 | 1 | 1634002 | 1634608 | + | lnc_RNA | retained_intron |
| 300537 | enst00000490017 | sg00000189409 | mmp23b-208 | 1 | 1634240 | 1635263 | + | mRNA | nonsense_mediated_decay |
| -312390 | enst00000620552 | sg00000188157 | agrn-208 | 1 | 1020123 | 1056118 | + | mRNA | protein_coding |
| -312393 | enst00000379370 | sg00000188157 | agrn-201 | 1 | 1020120 | 1056116 | + | mRNA | protein_coding |
| -319016 | enst00000649529 | sg00000187608 | isg15-203 | 1 | 1013497 | 1014540 | + | mRNA | protein_coding |
| -319320 | enst00000458555 | sg00000224969 | al645608.1-201 | 1 | 1011997 | 1013193 | - | lnc_RNA | lncrna |
| -324284 | enst00000423619 | sg00000231702 | al645608.3-201 | 1 | 1008076 | 1008229 | - | pseudogenic_transcript | processed_pseudogene |
| 325269 | enst00000341028 | sg00000248333 | cdk11b-202 | 1 | 1641772 | 1658972 | - | lnc_RNA | processed_transcript |
| 325309 | enst00000626918 | sg00000248333 | cdk11b-207 | 1 | 1635738 | 1659012 | - | mRNA | protein_coding |
| 325309 | enst00000615951 | sg00000248333 | cdk11b-206 | 1 | 1635738 | 1659012 | - | mRNA | nonsense_mediated_decay |
| 325309 | enst00000611150 | sg00000248333 | cdk11b-205 | 1 | 1635738 | 1659012 | - | mRNA | nonsense_mediated_decay |
| 325309 | enst00000340677 | sg00000248333 | cdk11b-201 | 1 | 1635738 | 1659012 | - | mRNA | protein_coding |
| 325309 | enst00000407249 | sg00000248333 | cdk11b-204 | 1 | 1635587 | 1659012 | - | mRNA | protein_coding |
| 325309 | enst00000341832 | sg00000248333 | cdk11b-203 | 1 | 1635227 | 1659012 | - | mRNA | protein_coding |
| 325309 | enst00000629312 | sg00000248333 | cdk11b-209 | 1 | 1635738 | 1659012 | - | mRNA | protein_coding |
| 325309 | enst00000629289 | sg00000248333 | cdk11b-208 | 1 | 1635738 | 1659012 | - | mRNA | protein_coding |
| 325622 | enst00000607013 | sg00000272004 | fo704657.1-201 | 1 | 1659325 | 1662602 | + | lnc_RNA | lncrna |
| -331368 | enst00000624652 | sg00000187608 | isg15-201 | 1 | 1001145 | 1014435 | + | mRNA | protein_coding |
| -331375 | enst00000624697 | sg00000187608 | isg15-202 | 1 | 1001138 | 1014540 | + | mRNA | protein_coding |
| -332341 | enst00000428771 | sg00000188290 | hes4-202 | 1 | 998962 | 1000172 | - | mRNA | protein_coding |
| -332402 | enst00000304952 | sg00000188290 | hes4-201 | 1 | 998964 | 1000111 | - | mRNA | protein_coding |
| -332417 | enst00000481869 | sg00000188290 | hes4-203 | 1 | 998966 | 1000096 | - | lnc_RNA | retained_intron |
| -332532 | enst00000484667 | sg00000188290 | hes4-204 | 1 | 998970 | 999981 | - | mRNA | protein_coding |
| -334462 | enst00000606034 | sg00000272512 | al645608.7-201 | 1 | 995966 | 998051 | - | lnc_RNA | lncrna |
| 336436 | enst00000480991 | sg00000189339 | slc35e2b-201 | 1 | 1663782 | 1670139 | - | lnc_RNA | retained_intron |
| 338287 | enst00000596308 | sg00000269737 | al691432.1-201 | 1 | 1671990 | 1673411 | + | lnc_RNA | processed_transcript |
| 339572 | enst00000597891 | sg00000269737 | al691432.1-202 | 1 | 1673275 | 1674397 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| -350420 | enst00000341290 | sg00000187642 | perm1-201 | 1 | 975204 | 982093 | - | mRNA | protein_coding |
| -351484 | enst00000433179 | sg00000187642 | perm1-202 | 1 | 975205 | 981029 | - | mRNA | protein_coding |
| -355872 | enst00000479361 | sg00000187642 | perm1-203 | 1 | 975205 | 976641 | - | lnc_RNA | retained_intron |
| -359001 | enst00000491024 | sg00000187583 | plekhn1-205 | 1 | 973512 | 975865 | + | mRNA | protein_coding |
| 359006 | enst00000481276 | sg00000189339 | slc35e2b-202 | 1 | 1670425 | 1692709 | - | lnc_RNA | retained_intron |
| 359021 | enst00000614300 | sg00000189339 | slc35e2b-204 | 1 | 1659529 | 1692724 | - | mRNA | protein_coding |
| 359025 | enst00000611123 | sg00000189339 | slc35e2b-203 | 1 | 1661479 | 1692728 | - | mRNA | protein_coding |
| 359092 | enst00000617444 | sg00000189339 | slc35e2b-205 | 1 | 1661478 | 1692795 | - | mRNA | protein_coding |
| -361638 | enst00000480267 | sg00000187583 | plekhn1-204 | 1 | 970875 | 971523 | + | lnc_RNA | retained_intron |
| -366011 | enst00000379407 | sg00000187583 | plekhn1-201 | 1 | 966502 | 975008 | + | mRNA | protein_coding |
| -366011 | enst00000379409 | sg00000187583 | plekhn1-202 | 1 | 966502 | 975008 | + | mRNA | protein_coding |
| -366031 | enst00000379410 | sg00000187583 | plekhn1-203 | 1 | 966482 | 975865 | + | mRNA | protein_coding |
| 366239 | enst00000234610 | sg00000215914 | mmp23a-201 | 1 | 1699942 | 1701782 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -368961 | enst00000481067 | sg00000187961 | klhl17-204 | 1 | 963552 | 964164 | + | lnc_RNA | retained_intron |
| -369786 | enst00000466300 | sg00000187961 | klhl17-203 | 1 | 962727 | 964530 | + | mRNA | nonsense_mediated_decay |
| 370413 | enst00000478901 | sg00000008128 | cdk11a-215 | 1 | 1703088 | 1704116 | - | lnc_RNA | retained_intron |
| 370550 | enst00000463652 | sg00000008128 | cdk11a-210 | 1 | 1702766 | 1704253 | - | lnc_RNA | retained_intron |
| 370852 | enst00000468397 | sg00000008128 | cdk11a-212 | 1 | 1703088 | 1704555 | - | lnc_RNA | retained_intron |
| 370882 | enst00000495016 | sg00000008128 | cdk11a-221 | 1 | 1703868 | 1704585 | - | lnc_RNA | processed_transcript |
| 370899 | enst00000491311 | sg00000008128 | cdk11a-219 | 1 | 1703604 | 1704602 | - | lnc_RNA | retained_intron |
| 371057 | enst00000464748 | sg00000008128 | cdk11a-211 | 1 | 1704099 | 1704760 | - | lnc_RNA | retained_intron |
| -371064 | enst00000463212 | sg00000187961 | klhl17-202 | 1 | 961449 | 962478 | + | lnc_RNA | retained_intron |
| 371321 | enst00000489300 | sg00000008128 | cdk11a-218 | 1 | 1704243 | 1705024 | - | lnc_RNA | retained_intron |
| -371874 | enst00000622660 | sg00000187961 | klhl17-205 | 1 | 960639 | 965602 | + | mRNA | protein_coding |
| -371929 | enst00000338591 | sg00000187961 | klhl17-201 | 1 | 960584 | 965719 | + | mRNA | protein_coding |
| -373204 | enst00000487214 | sg00000188976 | noc2l-205 | 1 | 954426 | 959309 | - | lnc_RNA | processed_transcript |
| -373257 | enst00000469563 | sg00000188976 | noc2l-202 | 1 | 958246 | 959256 | - | lnc_RNA | retained_intron |
| -373257 | enst00000327044 | sg00000188976 | noc2l-201 | 1 | 944203 | 959256 | - | mRNA | protein_coding |
| 373858 | enst00000468800 | sg00000008128 | cdk11a-213 | 1 | 1704049 | 1707561 | - | lnc_RNA | retained_intron |
| -374055 | enst00000477976 | sg00000188976 | noc2l-203 | 1 | 944205 | 958458 | - | lnc_RNA | retained_intron |
| 374528 | enst00000474916 | sg00000008128 | cdk11a-214 | 1 | 1704608 | 1708231 | - | lnc_RNA | retained_intron |
| 375173 | enst00000492390 | sg00000008128 | cdk11a-220 | 1 | 1704350 | 1708876 | - | lnc_RNA | retained_intron |
| -385453 | enst00000483767 | sg00000188976 | noc2l-204 | 1 | 944204 | 947060 | - | lnc_RNA | retained_intron |
| -386951 | enst00000496938 | sg00000188976 | noc2l-206 | 1 | 945319 | 945562 | - | lnc_RNA | processed_transcript |
| 387952 | enst00000356937 | sg00000008128 | cdk11a-202 | 1 | 1702881 | 1721655 | - | lnc_RNA | retained_intron |
| 388176 | enst00000498810 | sg00000008128 | cdk11a-222 | 1 | 1719166 | 1721879 | - | lnc_RNA | retained_intron |
| 389128 | enst00000378638 | sg00000008128 | cdk11a-206 | 1 | 1702881 | 1722831 | - | mRNA | protein_coding |
| 389128 | enst00000356200 | sg00000008128 | cdk11a-201 | 1 | 1702730 | 1722831 | - | mRNA | protein_coding |
| 389129 | enst00000509982 | sg00000008128 | cdk11a-223 | 1 | 1702881 | 1722832 | - | mRNA | nonsense_mediated_decay |
| 390316 | enst00000487462 | sg00000008128 | cdk11a-217 | 1 | 1722466 | 1724019 | - | lnc_RNA | retained_intron |
| 390329 | enst00000479362 | sg00000008128 | cdk11a-216 | 1 | 1716350 | 1724032 | - | mRNA | protein_coding |
| -390347 | enst00000464948 | sg00000187634 | samd11-206 | 1 | 942166 | 942892 | + | lnc_RNA | retained_intron |
| -390410 | enst00000466827 | sg00000187634 | samd11-207 | 1 | 942103 | 942802 | + | lnc_RNA | retained_intron |
| 390571 | enst00000401096 | sg00000008128 | cdk11a-207 | 1 | 1722708 | 1724274 | - | mRNA | protein_coding |
| 390621 | enst00000460465 | sg00000008128 | cdk11a-209 | 1 | 1702881 | 1724324 | - | mRNA | nonsense_mediated_decay |
| 390621 | enst00000378633 | sg00000008128 | cdk11a-205 | 1 | 1702881 | 1724324 | - | mRNA | protein_coding |
| 390621 | enst00000358779 | sg00000008128 | cdk11a-204 | 1 | 1702881 | 1724324 | - | mRNA | protein_coding |
| 390621 | enst00000357760 | sg00000008128 | cdk11a-203 | 1 | 1702881 | 1724324 | - | mRNA | protein_coding |
| 390654 | enst00000404249 | sg00000008128 | cdk11a-208 | 1 | 1702379 | 1724357 | - | mRNA | protein_coding |
| 390809 | enst00000577672 | sg00000227775 | al031282.1-201 | 1 | 1724512 | 1735973 | + | lnc_RNA | processed_transcript |
| 390912 | enst00000417099 | sg00000227775 | al031282.1-202 | 1 | 1724615 | 1731904 | + | lnc_RNA | processed_transcript |
| -391437 | enst00000474461 | sg00000187634 | samd11-208 | 1 | 941076 | 942994 | + | lnc_RNA | retained_intron |
| -392167 | enst00000478729 | sg00000187634 | samd11-209 | 1 | 940346 | 942173 | + | lnc_RNA | processed_transcript |
| -393238 | enst00000455979 | sg00000187634 | samd11-205 | 1 | 939275 | 944259 | + | mRNA | protein_coding |
| 398851 | enst00000424604 | sg00000227775 | al031282.1-203 | 1 | 1732554 | 1735975 | + | lnc_RNA | processed_transcript |
| 401917 | enst00000475229 | sg00000215790 | slc35e2a-203 | 1 | 1731828 | 1735620 | - | lnc_RNA | processed_transcript |
| 402114 | enst00000418950 | sg00000227775 | al031282.1-204 | 1 | 1735817 | 1737251 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| -402201 | enst00000341065 | sg00000187634 | samd11-201 | 1 | 930312 | 944575 | + | mRNA | protein_coding |
| 403985 | enst00000598846 | sg00000268575 | al031282.2-201 | 1 | 1702736 | 1737688 | - | lnc_RNA | lncrna |
| 405854 | enst00000643943 | sg00000215790 | slc35e2a-205 | 1 | 1734690 | 1739557 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -406772 | enst00000622503 | sg00000187634 | samd11-217 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -406772 | enst00000620200 | sg00000187634 | samd11-216 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -406772 | enst00000618779 | sg00000187634 | samd11-215 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -406772 | enst00000616016 | sg00000187634 | samd11-210 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -406772 | enst00000616125 | sg00000187634 | samd11-211 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -406772 | enst00000617307 | sg00000187634 | samd11-212 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -406772 | enst00000618181 | sg00000187634 | samd11-213 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -406772 | enst00000618323 | sg00000187634 | samd11-214 | 1 | 925741 | 944581 | + | mRNA | protein_coding |
| -406782 | enst00000342066 | sg00000187634 | samd11-202 | 1 | 925731 | 944574 | + | mRNA | protein_coding |
| -407363 | enst00000437963 | sg00000187634 | samd11-204 | 1 | 925150 | 935793 | + | mRNA | protein_coding |
| -408585 | enst00000420190 | sg00000187634 | samd11-203 | 1 | 923928 | 939291 | + | mRNA | protein_coding |
| -411497 | enst00000609207 | sg00000223764 | linc02593-203 | 1 | 916865 | 921016 | - | lnc_RNA | retained_intron |
| 412216 | enst00000647043 | sg00000215790 | slc35e2a-206 | 1 | 1724838 | 1745919 | - | lnc_RNA | processed_transcript |
| 412289 | enst00000246421 | sg00000215790 | slc35e2a-201 | 1 | 1732242 | 1745992 | - | lnc_RNA | processed_transcript |
| 412296 | enst00000355439 | sg00000215790 | slc35e2a-202 | 1 | 1724840 | 1745999 | - | mRNA | protein_coding |
| 412296 | enst00000643905 | sg00000215790 | slc35e2a-204 | 1 | 1727386 | 1745999 | - | mRNA | protein_coding |
| -412821 | enst00000417705 | sg00000223764 | linc02593-201 | 1 | 916870 | 919692 | - | lnc_RNA | lncrna |
| -413979 | enst00000432961 | sg00000223764 | linc02593-202 | 1 | 917370 | 918534 | - | lnc_RNA | retained_intron |
| -418342 | enst00000398216 | sg00000241180 | al645608.4-201 | 1 | 914171 | 914971 | + | lnc_RNA | lncrna |
| 420680 | enst00000498806 | sg00000008130 | nadk-217 | 1 | 1752975 | 1754383 | - | mRNA | nonsense_mediated_decay |
| -421078 | enst00000448179 | sg00000230699 | al645608.2-201 | 1 | 911435 | 914948 | + | lnc_RNA | lncrna |
| 421163 | enst00000497747 | sg00000008130 | nadk-216 | 1 | 1754165 | 1754866 | - | lnc_RNA | retained_intron |
| 421193 | enst00000497615 | sg00000008130 | nadk-215 | 1 | 1754203 | 1754896 | - | lnc_RNA | retained_intron |
| 422624 | enst00000480499 | sg00000008130 | nadk-209 | 1 | 1754163 | 1756327 | - | lnc_RNA | retained_intron |
| 422905 | enst00000489538 | sg00000008130 | nadk-211 | 1 | 1754181 | 1756608 | - | mRNA | nonsense_mediated_decay |
| 423321 | enst00000477235 | sg00000008130 | nadk-208 | 1 | 1754171 | 1757024 | - | lnc_RNA | retained_intron |
| 423525 | enst00000497186 | sg00000008130 | nadk-214 | 1 | 1754343 | 1757228 | - | mRNA | nonsense_mediated_decay |
| 423565 | enst00000469045 | sg00000008130 | nadk-207 | 1 | 1754061 | 1757268 | - | mRNA | protein_coding |
| 424872 | enst00000342348 | sg00000008130 | nadk-203 | 1 | 1752471 | 1758575 | - | mRNA | protein_coding |
| -427679 | enst00000607769 | sg00000272438 | al645608.6-201 | 1 | 904834 | 915976 | + | lnc_RNA | lncrna |
| 444716 | enst00000460602 | sg00000008130 | nadk-205 | 1 | 1756771 | 1778419 | - | lnc_RNA | retained_intron |
| 444716 | enst00000492768 | sg00000008130 | nadk-212 | 1 | 1756588 | 1778419 | - | lnc_RNA | processed_transcript |
| 444717 | enst00000464373 | sg00000008130 | nadk-206 | 1 | 1761665 | 1778420 | - | lnc_RNA | retained_intron |
| 444767 | enst00000341426 | sg00000008130 | nadk-201 | 1 | 1751232 | 1778470 | - | mRNA | protein_coding |
| 445087 | enst00000341991 | sg00000008130 | nadk-202 | 1 | 1751232 | 1778790 | - | mRNA | protein_coding |
| 446259 | enst00000492845 | sg00000008130 | nadk-213 | 1 | 1756004 | 1779962 | - | lnc_RNA | retained_intron |
| 446366 | enst00000378625 | sg00000008130 | nadk-204 | 1 | 1751232 | 1780069 | - | mRNA | protein_coding |
| 446754 | enst00000480542 | sg00000008130 | nadk-210 | 1 | 1779157 | 1780457 | - | lnc_RNA | processed_transcript |
| -455279 | enst00000635557 | sg00000283040 | al669831.5-201 | 1 | 874529 | 877234 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -455610 | enst00000446136 | sg00000230368 | fam41c-203 | 1 | 868071 | 876903 | - | lnc_RNA | lncrna |
| -455711 | enst00000427857 | sg00000230368 | fam41c-201 | 1 | 868403 | 876802 | - | lnc_RNA | lncrna |
| -459221 | enst00000415481 | sg00000234711 | tubb8p11-201 | 1 | 873292 | 874349 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 460494 | enst00000461893 | sg00000078369 | gnb1-205 | 1 | 1787987 | 1794197 | - | lnc_RNA | retained_intron |
| -462312 | enst00000432963 | sg00000230368 | fam41c-202 | 1 | 868240 | 870201 | - | lnc_RNA | lncrna |
| -472286 | enst00000661463 | sg00000288531 | al669831.7-202 | 1 | 860227 | 868202 | + | lnc_RNA | lncrna |
| -472287 | enst00000671208 | sg00000288531 | al669831.7-201 | 1 | 860226 | 866720 | + | lnc_RNA | lncrna |
| -481165 | enst00000425657 | sg00000228794 | linc01128-203 | 1 | 851348 | 852752 | + | lnc_RNA | retained_intron |
| 484683 | enst00000471354 | sg00000078369 | gnb1-206 | 1 | 1789061 | 1818386 | - | lnc_RNA | retained_intron |
| 491851 | enst00000607589 | sg00000078369 | gnb1-208 | 1 | 1824988 | 1825554 | - | lnc_RNA | retained_intron |
| 498582 | enst00000437146 | sg00000078369 | gnb1-203 | 1 | 1804526 | 1832285 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc