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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #97 | 19 | 17841311 | 17842723 | 1412 | 3 | 43 | 1.15874e-17 | 1.188e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000528705 | sg00000105639 | jak3-206 | 19 | 17839424 | 17842525 | - | lnc_RNA | retained_intron |
| 1724 | enst00000527670 | sg00000105639 | jak3-204 | 19 | 17826152 | 17844447 | - | mRNA | protein_coding |
| 5268 | enst00000527031 | sg00000105639 | jak3-203 | 19 | 17824780 | 17847991 | - | lnc_RNA | retained_intron |
| 5294 | enst00000534444 | sg00000105639 | jak3-207 | 19 | 17829788 | 17848017 | - | mRNA | protein_coding |
| 5309 | enst00000526008 | sg00000105639 | jak3-202 | 19 | 17838270 | 17848032 | - | lnc_RNA | processed_transcript |
| 5315 | enst00000458235 | sg00000105639 | jak3-201 | 19 | 17826269 | 17848038 | - | mRNA | protein_coding |
| 5348 | enst00000528293 | sg00000105639 | jak3-205 | 19 | 17842435 | 17848071 | - | lnc_RNA | retained_intron |
| 17187 | enst00000222247 | sg00000105640 | rpl18a-201 | 19 | 17859910 | 17863319 | + | mRNA | protein_coding |
| 17198 | enst00000600147 | sg00000105640 | rpl18a-205 | 19 | 17859921 | 17864153 | + | mRNA | protein_coding |
| 17209 | enst00000599898 | sg00000105640 | rpl18a-204 | 19 | 17859932 | 17863315 | + | mRNA | protein_coding |
| 17230 | enst00000602216 | sg00000105640 | rpl18a-207 | 19 | 17859953 | 17862177 | + | lnc_RNA | retained_intron |
| 17402 | enst00000597648 | sg00000105640 | rpl18a-202 | 19 | 17860125 | 17863243 | + | mRNA | protein_coding |
| 18040 | enst00000599870 | sg00000105640 | rpl18a-203 | 19 | 17860763 | 17863304 | + | mRNA | protein_coding |
| 18610 | enst00000600238 | sg00000105640 | rpl18a-206 | 19 | 17861333 | 17862907 | + | lnc_RNA | retained_intron |
| -19737 | enst00000379695 | sg00000248099 | insl3-202 | 19 | 17816514 | 17821574 | - | mRNA | protein_coding |
| -19792 | enst00000317306 | sg00000248099 | insl3-201 | 19 | 17816512 | 17821519 | - | mRNA | protein_coding |
| -19806 | enst00000598577 | sg00000248099 | insl3-203 | 19 | 17816513 | 17821505 | - | mRNA | protein_coding |
| 19865 | enst00000384437 | sg00000207166 | snora68-201 | 19 | 17862588 | 17862720 | + | snoRNA | snorna |
| 28982 | enst00000623214 | sg00000279617 | ac005796.1-201 | 19 | 17871273 | 17871705 | - | unconfirmed_transcript | tec |
| 29222 | enst00000222248 | sg00000105641 | slc5a5-201 | 19 | 17871945 | 17895174 | + | mRNA | protein_coding |
| 39256 | enst00000597109 | sg00000105641 | slc5a5-202 | 19 | 17881979 | 17888378 | + | lnc_RNA | retained_intron |
| -46154 | enst00000595387 | sg00000179913 | b3gnt3-202 | 19 | 17795157 | 17812233 | + | mRNA | protein_coding |
| -46173 | enst00000318683 | sg00000179913 | b3gnt3-201 | 19 | 17795138 | 17813576 | + | mRNA | protein_coding |
| -46175 | enst00000600777 | sg00000179913 | b3gnt3-204 | 19 | 17795136 | 17808189 | + | mRNA | protein_coding |
| -46483 | enst00000599265 | sg00000179913 | b3gnt3-203 | 19 | 17794828 | 17811753 | + | mRNA | protein_coding |
| -62838 | enst00000595594 | sg00000130475 | fcho1-210 | 19 | 17778473 | 17784235 | + | lnc_RNA | retained_intron |
| -62870 | enst00000600058 | sg00000130475 | fcho1-230 | 19 | 17778441 | 17783172 | + | lnc_RNA | retained_intron |
| -64685 | enst00000602111 | sg00000130475 | fcho1-236 | 19 | 17776626 | 17783058 | + | lnc_RNA | retained_intron |
| -65154 | enst00000599766 | sg00000130475 | fcho1-229 | 19 | 17776157 | 17781722 | + | lnc_RNA | retained_intron |
| -66644 | enst00000596522 | sg00000130475 | fcho1-215 | 19 | 17774667 | 17776043 | + | lnc_RNA | retained_intron |
| -70468 | enst00000600393 | sg00000130475 | fcho1-233 | 19 | 17770843 | 17774695 | + | lnc_RNA | retained_intron |
| -70888 | enst00000597076 | sg00000130475 | fcho1-219 | 19 | 17770423 | 17774589 | + | lnc_RNA | retained_intron |
| -78608 | enst00000597512 | sg00000130475 | fcho1-221 | 19 | 17762703 | 17788538 | + | mRNA | protein_coding |
| -86213 | enst00000595549 | sg00000130475 | fcho1-209 | 19 | 17755098 | 17772697 | + | mRNA | protein_coding |
| -86635 | enst00000596951 | sg00000130475 | fcho1-218 | 19 | 17754676 | 17788562 | + | mRNA | protein_coding |
| -87093 | enst00000598960 | sg00000130475 | fcho1-227 | 19 | 17754218 | 17762805 | + | mRNA | protein_coding |
| -87099 | enst00000595749 | sg00000130475 | fcho1-211 | 19 | 17754212 | 17754898 | + | lnc_RNA | processed_transcript |
| -87099 | enst00000596865 | sg00000130475 | fcho1-217 | 19 | 17754212 | 17766766 | + | mRNA | protein_coding |
| -87101 | enst00000596462 | sg00000130475 | fcho1-213 | 19 | 17754210 | 17762780 | + | mRNA | protein_coding |
| -89775 | enst00000597718 | sg00000130475 | fcho1-222 | 19 | 17751536 | 17770896 | + | mRNA | protein_coding |
| -89805 | enst00000595033 | sg00000130475 | fcho1-208 | 19 | 17751506 | 17788453 | + | mRNA | protein_coding |
| -89805 | enst00000596507 | sg00000130475 | fcho1-214 | 19 | 17751506 | 17772517 | + | mRNA | protein_coding |
| -89808 | enst00000594068 | sg00000130475 | fcho1-205 | 19 | 17751503 | 17770554 | + | mRNA | protein_coding |
| -89812 | enst00000595023 | sg00000130475 | fcho1-207 | 19 | 17751499 | 17774241 | + | mRNA | protein_coding |
| -89822 | enst00000598932 | sg00000130475 | fcho1-226 | 19 | 17751489 | 17766778 | + | mRNA | protein_coding |
| -89830 | enst00000598086 | sg00000130475 | fcho1-224 | 19 | 17751481 | 17766809 | + | mRNA | protein_coding |
| -89830 | enst00000593870 | sg00000130475 | fcho1-204 | 19 | 17751481 | 17762840 | + | mRNA | protein_coding |
| -89834 | enst00000596536 | sg00000130475 | fcho1-216 | 19 | 17751477 | 17788557 | + | mRNA | protein_coding |
| 90292 | enst00000445755 | sg00000007080 | ccdc124-201 | 19 | 17933015 | 17943985 | + | mRNA | protein_coding |
| 90300 | enst00000602080 | sg00000007080 | ccdc124-204 | 19 | 17933023 | 17936992 | + | lnc_RNA | retained_intron |
| 92373 | enst00000597436 | sg00000007080 | ccdc124-203 | 19 | 17935096 | 17943991 | + | mRNA | protein_coding |
| 93528 | enst00000596123 | sg00000007080 | ccdc124-202 | 19 | 17936251 | 17943321 | + | mRNA | protein_coding |
| -93543 | enst00000601247 | sg00000130475 | fcho1-235 | 19 | 17747768 | 17766695 | + | lnc_RNA | processed_transcript |
| -93549 | enst00000598067 | sg00000130475 | fcho1-223 | 19 | 17747762 | 17762819 | + | mRNA | protein_coding |
| -93549 | enst00000599236 | sg00000130475 | fcho1-228 | 19 | 17747762 | 17766622 | + | lnc_RNA | processed_transcript |
| -93549 | enst00000593833 | sg00000130475 | fcho1-203 | 19 | 17747762 | 17770856 | + | mRNA | protein_coding |
| -93550 | enst00000600201 | sg00000130475 | fcho1-231 | 19 | 17747761 | 17755622 | + | lnc_RNA | retained_intron |
| -93552 | enst00000593385 | sg00000130475 | fcho1-202 | 19 | 17747759 | 17762780 | + | mRNA | protein_coding |
| -93555 | enst00000597474 | sg00000130475 | fcho1-220 | 19 | 17747756 | 17770463 | + | mRNA | protein_coding |
| -93555 | enst00000598539 | sg00000130475 | fcho1-225 | 19 | 17747756 | 17764383 | + | mRNA | protein_coding |
| -93558 | enst00000596309 | sg00000130475 | fcho1-212 | 19 | 17747753 | 17766751 | + | mRNA | protein_coding |
| -93565 | enst00000600209 | sg00000130475 | fcho1-232 | 19 | 17747746 | 17770827 | + | mRNA | protein_coding |
| -93566 | enst00000600676 | sg00000130475 | fcho1-234 | 19 | 17747745 | 17788568 | + | mRNA | protein_coding |
| -93593 | enst00000594202 | sg00000130475 | fcho1-206 | 19 | 17747718 | 17788557 | + | mRNA | protein_coding |
| -93593 | enst00000252771 | sg00000130475 | fcho1-201 | 19 | 17747718 | 17788568 | + | mRNA | protein_coding |
| -106798 | enst00000595363 | sg00000268112 | ac008761.1-201 | 19 | 17727840 | 17734513 | - | lnc_RNA | lncrna |
| -108291 | enst00000601097 | sg00000130479 | map1s-220 | 19 | 17733020 | 17734513 | + | lnc_RNA | retained_intron |
| 108570 | enst00000222249 | sg00000105642 | kcnn1-201 | 19 | 17951293 | 18000080 | + | mRNA | protein_coding |
| 109462 | enst00000594192 | sg00000105642 | kcnn1-202 | 19 | 17952185 | 17954653 | + | lnc_RNA | processed_transcript |
| -113163 | enst00000598756 | sg00000130479 | map1s-214 | 19 | 17728148 | 17734350 | + | lnc_RNA | processed_transcript |
| -113873 | enst00000597000 | sg00000130479 | map1s-210 | 19 | 17727438 | 17734513 | + | mRNA | protein_coding |
| -120559 | enst00000598916 | sg00000130479 | map1s-216 | 19 | 17720752 | 17725975 | + | lnc_RNA | processed_transcript |
| -120587 | enst00000598769 | sg00000130479 | map1s-215 | 19 | 17720724 | 17726007 | + | lnc_RNA | retained_intron |
| -121110 | enst00000595338 | sg00000130479 | map1s-208 | 19 | 17720201 | 17725917 | + | lnc_RNA | processed_transcript |
| -121120 | enst00000596637 | sg00000130479 | map1s-209 | 19 | 17720191 | 17724195 | + | mRNA | nonsense_mediated_decay |
| -121147 | enst00000593593 | sg00000130479 | map1s-203 | 19 | 17720164 | 17725089 | + | mRNA | nonsense_mediated_decay |
| -121150 | enst00000594365 | sg00000130479 | map1s-206 | 19 | 17720161 | 17726000 | + | mRNA | nonsense_mediated_decay |
| -121155 | enst00000544059 | sg00000130479 | map1s-202 | 19 | 17720156 | 17734490 | + | mRNA | protein_coding |
| -121175 | enst00000599494 | sg00000130479 | map1s-217 | 19 | 17720136 | 17726050 | + | lnc_RNA | processed_transcript |
| -121530 | enst00000597067 | sg00000130479 | map1s-211 | 19 | 17719781 | 17725855 | + | lnc_RNA | processed_transcript |
| -121540 | enst00000594340 | sg00000130479 | map1s-205 | 19 | 17719771 | 17725964 | + | lnc_RNA | processed_transcript |
| -121814 | enst00000597681 | sg00000130479 | map1s-212 | 19 | 17719497 | 17728111 | + | lnc_RNA | processed_transcript |
| -121827 | enst00000601544 | sg00000130479 | map1s-221 | 19 | 17719484 | 17725944 | + | lnc_RNA | processed_transcript |
| -121831 | enst00000324096 | sg00000130479 | map1s-201 | 19 | 17719480 | 17734513 | + | mRNA | protein_coding |
| -121831 | enst00000597735 | sg00000130479 | map1s-213 | 19 | 17719480 | 17733338 | + | mRNA | protein_coding |
| -121831 | enst00000594212 | sg00000130479 | map1s-204 | 19 | 17719480 | 17726543 | + | mRNA | nonsense_mediated_decay |
| -121831 | enst00000600186 | sg00000130479 | map1s-218 | 19 | 17719480 | 17726050 | + | mRNA | protein_coding |
| -121831 | enst00000600608 | sg00000130479 | map1s-219 | 19 | 17719480 | 17724208 | + | mRNA | nonsense_mediated_decay |
| -122069 | enst00000594625 | sg00000130479 | map1s-207 | 19 | 17719242 | 17725953 | + | mRNA | protein_coding |
| 124402 | enst00000609922 | sg00000105642 | kcnn1-203 | 19 | 17967125 | 17974113 | + | mRNA | protein_coding |
| 129302 | enst00000516782 | sg00000252591 | rna5sp468-201 | 19 | 17972025 | 17972117 | + | pseudogenic_transcript | rrna_pseudogene |
| 131146 | enst00000615435 | sg00000105642 | kcnn1-204 | 19 | 17973869 | 17998445 | + | mRNA | protein_coding |
| -152946 | enst00000550896 | sg00000130477 | unc13a-204 | 19 | 17606051 | 17688365 | - | mRNA | protein_coding |
| -152962 | enst00000551649 | sg00000130477 | unc13a-205 | 19 | 17605321 | 17688349 | - | mRNA | protein_coding |
| -152985 | enst00000552293 | sg00000130477 | unc13a-206 | 19 | 17605961 | 17688326 | - | mRNA | protein_coding |
| -153112 | enst00000519716 | sg00000130477 | unc13a-202 | 19 | 17601328 | 17688199 | - | mRNA | protein_coding |
| 158409 | enst00000379656 | sg00000105643 | arrdc2-202 | 19 | 18001132 | 18014102 | + | mRNA | protein_coding |
| 164459 | enst00000595712 | sg00000105643 | arrdc2-206 | 19 | 18007182 | 18009889 | + | mRNA | protein_coding |
| 164517 | enst00000600788 | sg00000105643 | arrdc2-208 | 19 | 18007240 | 18008977 | + | lnc_RNA | processed_transcript |
| 165445 | enst00000593560 | sg00000105643 | arrdc2-204 | 19 | 18008168 | 18010030 | + | mRNA | protein_coding |
| 165447 | enst00000596105 | sg00000105643 | arrdc2-207 | 19 | 18008170 | 18008861 | + | lnc_RNA | retained_intron |
| 165447 | enst00000608009 | sg00000105643 | arrdc2-209 | 19 | 18008170 | 18009850 | + | lnc_RNA | processed_transcript |
| 165447 | enst00000593460 | sg00000105643 | arrdc2-203 | 19 | 18008170 | 18014100 | + | lnc_RNA | retained_intron |
| 165447 | enst00000222250 | sg00000105643 | arrdc2-201 | 19 | 18008170 | 18014102 | + | mRNA | protein_coding |
| 166826 | enst00000594411 | sg00000105643 | arrdc2-205 | 19 | 18009549 | 18010358 | + | lnc_RNA | retained_intron |
| 167158 | enst00000624199 | sg00000279172 | ac020904.3-201 | 19 | 18009440 | 18009881 | - | unconfirmed_transcript | tec |
| 179680 | enst00000621646 | sg00000273654 | ac020904.2-201 | 19 | 18022403 | 18032099 | + | lnc_RNA | processed_transcript |
| 187906 | enst00000614660 | sg00000273654 | ac020904.2-202 | 19 | 18030629 | 18032029 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 197632 | enst00000594322 | sg00000268623 | ac020904.1-201 | 19 | 18040355 | 18041083 | + | pseudogenic_transcript | processed_pseudogene |
| 205914 | enst00000461260 | sg00000243455 | rps18p13-201 | 19 | 18048637 | 18049090 | + | pseudogenic_transcript | processed_pseudogene |
| -212974 | enst00000601528 | sg00000130477 | unc13a-207 | 19 | 17626288 | 17628337 | - | lnc_RNA | retained_intron |
| -218864 | enst00000624803 | sg00000279300 | ac008761.3-201 | 19 | 17622447 | 17623338 | + | unconfirmed_transcript | tec |
| -222269 | enst00000517497 | sg00000130477 | unc13a-201 | 19 | 17609975 | 17619042 | - | lnc_RNA | retained_intron |
| -227589 | enst00000600512 | sg00000269752 | ac008761.2-201 | 19 | 17613722 | 17614430 | + | lnc_RNA | lncrna |
| -229151 | enst00000523229 | sg00000130477 | unc13a-203 | 19 | 17606314 | 17612160 | - | lnc_RNA | retained_intron |
| 244207 | enst00000597416 | sg00000096996 | il12rb1-205 | 19 | 18083112 | 18086930 | - | lnc_RNA | retained_intron |
| 244209 | enst00000322153 | sg00000096996 | il12rb1-201 | 19 | 18070562 | 18086932 | - | mRNA | protein_coding |
| 244211 | enst00000593993 | sg00000096996 | il12rb1-203 | 19 | 18058995 | 18086934 | - | mRNA | protein_coding |
| 244273 | enst00000430026 | sg00000096996 | il12rb1-202 | 19 | 18080898 | 18086996 | - | mRNA | protein_coding |
| -251240 | enst00000469924 | sg00000243771 | ac010618.1-201 | 19 | 17589595 | 17590071 | - | pseudogenic_transcript | processed_pseudogene |
| 255070 | enst00000262811 | sg00000099308 | mast3-201 | 19 | 18097793 | 18151692 | + | mRNA | protein_coding |
| 256093 | enst00000598019 | sg00000096996 | il12rb1-206 | 19 | 18082187 | 18098816 | - | mRNA | protein_coding |
| 256204 | enst00000594176 | sg00000096996 | il12rb1-204 | 19 | 18082234 | 18098927 | - | mRNA | protein_coding |
| 256221 | enst00000600835 | sg00000096996 | il12rb1-207 | 19 | 18058995 | 18098944 | - | mRNA | protein_coding |
| -261360 | enst00000593832 | sg00000130309 | colgalt1-202 | 19 | 17579951 | 17583162 | + | lnc_RNA | retained_intron |
| -264236 | enst00000597075 | sg00000130309 | colgalt1-203 | 19 | 17577075 | 17580870 | + | lnc_RNA | retained_intron |
| 267447 | enst00000608648 | sg00000099308 | mast3-203 | 19 | 18110170 | 18129359 | + | lnc_RNA | processed_transcript |
| -272698 | enst00000597147 | sg00000130309 | colgalt1-204 | 19 | 17568613 | 17580806 | + | mRNA | protein_coding |
| -275278 | enst00000601354 | sg00000130309 | colgalt1-206 | 19 | 17566033 | 17571924 | + | lnc_RNA | processed_transcript |
| 280676 | enst00000601226 | sg00000099308 | mast3-202 | 19 | 18123399 | 18124132 | + | lnc_RNA | retained_intron |
| -284750 | enst00000600474 | sg00000130309 | colgalt1-205 | 19 | 17556561 | 17568577 | + | mRNA | protein_coding |
| -285662 | enst00000252599 | sg00000130309 | colgalt1-201 | 19 | 17555649 | 17583157 | + | mRNA | protein_coding |
| 294632 | enst00000609494 | sg00000099308 | mast3-205 | 19 | 18137355 | 18144508 | + | mRNA | nonsense_mediated_decay |
| -301158 | enst00000595601 | sg00000167483 | niban3-204 | 19 | 17540153 | 17544009 | + | lnc_RNA | retained_intron |
| 301827 | enst00000609076 | sg00000099308 | mast3-204 | 19 | 18144550 | 18146974 | + | lnc_RNA | processed_transcript |
| -302448 | enst00000651880 | sg00000167483 | niban3-213 | 19 | 17538863 | 17553613 | + | lnc_RNA | retained_intron |
| -307832 | enst00000599819 | sg00000167483 | niban3-209 | 19 | 17533479 | 17539225 | + | lnc_RNA | retained_intron |
| 308968 | enst00000600364 | sg00000269145 | ac007192.2-201 | 19 | 18144522 | 18151691 | - | lnc_RNA | lncrna |
| 310435 | enst00000593731 | sg00000268173 | ac007192.1-201 | 19 | 18153158 | 18178117 | + | mRNA | nonsense_mediated_decay |
| 310440 | enst00000222254 | sg00000105647 | pik3r2-201 | 19 | 18153163 | 18170532 | + | mRNA | protein_coding |
| 312899 | enst00000426902 | sg00000105647 | pik3r2-202 | 19 | 18155622 | 18170073 | + | mRNA | nonsense_mediated_decay |
| 313157 | enst00000617130 | sg00000105647 | pik3r2-207 | 19 | 18155880 | 18169294 | + | mRNA | protein_coding |
| 313157 | enst00000617642 | sg00000105647 | pik3r2-208 | 19 | 18155880 | 18166140 | + | mRNA | protein_coding |
| -314007 | enst00000599124 | sg00000167483 | niban3-207 | 19 | 17527304 | 17552024 | + | mRNA | protein_coding |
| -314020 | enst00000600871 | sg00000167483 | niban3-211 | 19 | 17527291 | 17551960 | + | mRNA | protein_coding |
| -314023 | enst00000600519 | sg00000167483 | niban3-210 | 19 | 17527288 | 17553645 | + | mRNA | nonsense_mediated_decay |
| -314033 | enst00000449408 | sg00000167483 | niban3-203 | 19 | 17527278 | 17553634 | + | mRNA | protein_coding |
| -314044 | enst00000597887 | sg00000167483 | niban3-206 | 19 | 17527267 | 17537505 | + | lnc_RNA | processed_transcript |
| -314048 | enst00000599164 | sg00000167483 | niban3-208 | 19 | 17527263 | 17552030 | + | mRNA | protein_coding |
| -314073 | enst00000601861 | sg00000167483 | niban3-212 | 19 | 17527238 | 17553639 | + | mRNA | protein_coding |
| -318010 | enst00000335393 | sg00000167483 | niban3-202 | 19 | 17523301 | 17553839 | + | mRNA | protein_coding |
| -318010 | enst00000595684 | sg00000167483 | niban3-205 | 19 | 17523301 | 17549811 | + | mRNA | protein_coding |
| -318010 | enst00000332386 | sg00000167483 | niban3-201 | 19 | 17523301 | 17552026 | + | mRNA | protein_coding |
| 318144 | enst00000474310 | sg00000105647 | pik3r2-205 | 19 | 18160867 | 18161468 | + | lnc_RNA | retained_intron |
| 319323 | enst00000600533 | sg00000105647 | pik3r2-206 | 19 | 18162046 | 18162717 | + | lnc_RNA | retained_intron |
| 320422 | enst00000672815 | sg00000105647 | pik3r2-209 | 19 | 18163145 | 18168808 | + | mRNA | nonsense_mediated_decay |
| -320746 | enst00000596192 | sg00000269161 | ac010618.2-201 | 19 | 17518330 | 17520565 | - | lnc_RNA | lncrna |
| 323553 | enst00000464016 | sg00000105647 | pik3r2-204 | 19 | 18166276 | 18169231 | + | mRNA | nonsense_mediated_decay |
| -325569 | enst00000598811 | sg00000130313 | pgls-205 | 19 | 17515742 | 17521030 | + | lnc_RNA | retained_intron |
| 325775 | enst00000459743 | sg00000105647 | pik3r2-203 | 19 | 18168498 | 18169152 | + | lnc_RNA | retained_intron |
| -329422 | enst00000596643 | sg00000269439 | ac010618.3-201 | 19 | 17488990 | 17511889 | - | lnc_RNA | lncrna |
| -329446 | enst00000595782 | sg00000130313 | pgls-203 | 19 | 17511865 | 17521288 | + | mRNA | protein_coding |
| -329641 | enst00000600923 | sg00000130313 | pgls-206 | 19 | 17511670 | 17517835 | + | mRNA | protein_coding |
| -329662 | enst00000252603 | sg00000130313 | pgls-201 | 19 | 17511649 | 17521288 | + | mRNA | protein_coding |
| -329667 | enst00000596799 | sg00000130313 | pgls-204 | 19 | 17511644 | 17513244 | + | lnc_RNA | retained_intron |
| -329675 | enst00000594761 | sg00000130313 | pgls-202 | 19 | 17511636 | 17521043 | + | mRNA | nonsense_mediated_decay |
| -329836 | enst00000655024 | sg00000269439 | ac010618.3-205 | 19 | 17491387 | 17511475 | - | lnc_RNA | lncrna |
| -329843 | enst00000595116 | sg00000269439 | ac010618.3-203 | 19 | 17503436 | 17511468 | - | lnc_RNA | lncrna |
| 330439 | enst00000597802 | sg00000216490 | ifi30-202 | 19 | 18173162 | 18175222 | + | mRNA | protein_coding |
| -330461 | enst00000615939 | sg00000269439 | ac010618.3-204 | 19 | 17510100 | 17510850 | - | lnc_RNA | lncrna |
| 331090 | enst00000407280 | sg00000216490 | ifi30-201 | 19 | 18173813 | 18178117 | + | mRNA | protein_coding |
| 331446 | enst00000600463 | sg00000216490 | ifi30-203 | 19 | 18174169 | 18178117 | + | lnc_RNA | retained_intron |
| -340945 | enst00000599965 | sg00000130304 | slc27a1-207 | 19 | 17500366 | 17504900 | + | mRNA | protein_coding |
| -341441 | enst00000598848 | sg00000130304 | slc27a1-205 | 19 | 17499870 | 17504601 | + | lnc_RNA | processed_transcript |
| -345896 | enst00000594962 | sg00000130304 | slc27a1-203 | 19 | 17495415 | 17506168 | + | lnc_RNA | retained_intron |
| -348922 | enst00000598141 | sg00000269439 | ac010618.3-202 | 19 | 17489801 | 17492389 | - | lnc_RNA | lncrna |
| 350495 | enst00000599612 | sg00000254858 | mpv17l2-204 | 19 | 18193218 | 18196948 | + | mRNA | protein_coding |
| 350495 | enst00000534421 | sg00000254858 | mpv17l2-203 | 19 | 18193218 | 18194160 | + | lnc_RNA | retained_intron |
| 350509 | enst00000532896 | sg00000254858 | mpv17l2-201 | 19 | 18193232 | 18196742 | + | lnc_RNA | retained_intron |
| 350527 | enst00000533807 | sg00000254858 | mpv17l2-202 | 19 | 18193250 | 18196948 | + | lnc_RNA | retained_intron |
| -352551 | enst00000593701 | sg00000130304 | slc27a1-202 | 19 | 17488760 | 17500555 | + | lnc_RNA | retained_intron |
| 361289 | enst00000481914 | sg00000105649 | rab3a-203 | 19 | 18200327 | 18204012 | - | mRNA | protein_coding |
| 361312 | enst00000515410 | sg00000105649 | rab3a-204 | 19 | 18202338 | 18204035 | - | lnc_RNA | retained_intron |
| 361319 | enst00000464076 | sg00000105649 | rab3a-202 | 19 | 18196799 | 18204042 | - | mRNA | protein_coding |
| 361319 | enst00000222256 | sg00000105649 | rab3a-201 | 19 | 18196784 | 18204042 | - | mRNA | protein_coding |
| 362007 | enst00000594805 | sg00000268650 | ac005759.1-201 | 19 | 18204730 | 18220480 | + | lnc_RNA | lncrna |
| 362011 | enst00000599416 | sg00000268650 | ac005759.1-202 | 19 | 18204734 | 18209046 | + | lnc_RNA | lncrna |
| 362018 | enst00000596473 | sg00000268650 | ac005759.1-203 | 19 | 18204741 | 18205563 | + | lnc_RNA | lncrna |
| -370773 | enst00000600297 | sg00000130304 | slc27a1-209 | 19 | 17470538 | 17489065 | + | mRNA | nonsense_mediated_decay |
| -370783 | enst00000599380 | sg00000130304 | slc27a1-206 | 19 | 17470528 | 17499398 | + | mRNA | nonsense_mediated_decay |
| -370787 | enst00000252595 | sg00000130304 | slc27a1-201 | 19 | 17470524 | 17506168 | + | mRNA | protein_coding |
| -370822 | enst00000598424 | sg00000130304 | slc27a1-204 | 19 | 17470489 | 17504986 | + | mRNA | protein_coding |
| -372542 | enst00000600277 | sg00000130304 | slc27a1-208 | 19 | 17468769 | 17497314 | + | mRNA | nonsense_mediated_decay |
| 378399 | enst00000598111 | sg00000105650 | pde4c-211 | 19 | 18210929 | 18221122 | - | mRNA | nonsense_mediated_decay |
| 378412 | enst00000593594 | sg00000105650 | pde4c-204 | 19 | 18220237 | 18221135 | - | mRNA | nonsense_mediated_decay |
| 378412 | enst00000595343 | sg00000105650 | pde4c-207 | 19 | 18220237 | 18221135 | - | mRNA | nonsense_mediated_decay |
| 378412 | enst00000597573 | sg00000105650 | pde4c-210 | 19 | 18220269 | 18221135 | - | lnc_RNA | retained_intron |
| 378438 | enst00000539010 | sg00000105650 | pde4c-203 | 19 | 18210831 | 18221161 | - | mRNA | protein_coding |
| 378509 | enst00000597297 | sg00000105650 | pde4c-208 | 19 | 18210929 | 18221232 | - | lnc_RNA | retained_intron |
| -380357 | enst00000301944 | sg00000171773 | nxnl1-201 | 19 | 17455425 | 17460954 | - | mRNA | protein_coding |
| -380507 | enst00000594663 | sg00000269035 | ac010319.2-201 | 19 | 17436611 | 17460804 | - | mRNA | protein_coding |
| 381770 | enst00000447275 | sg00000105650 | pde4c-202 | 19 | 18210543 | 18224493 | - | mRNA | protein_coding |
| 383063 | enst00000610023 | sg00000105650 | pde4c-214 | 19 | 18220905 | 18225786 | - | mRNA | protein_coding |
| 383702 | enst00000599188 | sg00000105650 | pde4c-212 | 19 | 18210831 | 18226425 | - | mRNA | nonsense_mediated_decay |
| 383752 | enst00000262805 | sg00000105650 | pde4c-201 | 19 | 18210560 | 18226475 | - | mRNA | protein_coding |
| -388342 | enst00000598950 | sg00000269736 | ac010319.5-201 | 19 | 17452211 | 17452969 | - | lnc_RNA | lncrna |
| 390662 | enst00000597360 | sg00000105650 | pde4c-209 | 19 | 18210552 | 18233385 | - | lnc_RNA | retained_intron |
| 390948 | enst00000594465 | sg00000105650 | pde4c-205 | 19 | 18210560 | 18233671 | - | mRNA | protein_coding |
| 391533 | enst00000599754 | sg00000105650 | pde4c-213 | 19 | 18222286 | 18234256 | - | mRNA | protein_coding |
| -392643 | enst00000341130 | sg00000188051 | tmem221-201 | 19 | 17435509 | 17448668 | - | mRNA | protein_coding |
| -393002 | enst00000593461 | sg00000188051 | tmem221-202 | 19 | 17444812 | 17448309 | - | lnc_RNA | retained_intron |
| 405477 | enst00000594617 | sg00000105650 | pde4c-206 | 19 | 18208652 | 18248200 | - | mRNA | protein_coding |
| 409708 | enst00000600667 | sg00000284797 | ac008397.1-203 | 19 | 18250139 | 18252431 | - | lnc_RNA | retained_intron |
| 412628 | enst00000596647 | sg00000284797 | ac008397.1-201 | 19 | 18249950 | 18255351 | - | lnc_RNA | processed_transcript |
| 412696 | enst00000643046 | sg00000284797 | ac008397.1-202 | 19 | 18250039 | 18255419 | - | mRNA | protein_coding |
| 412696 | enst00000355502 | sg00000285188 | ac008397.2-201 | 19 | 18207961 | 18255419 | - | mRNA | protein_coding |
| -418867 | enst00000594784 | sg00000141971 | mvb12a-213 | 19 | 17422444 | 17425331 | + | mRNA | protein_coding |
| -418987 | enst00000593957 | sg00000269481 | ac010319.4-201 | 19 | 17414257 | 17422324 | - | lnc_RNA | lncrna |
| -419026 | enst00000524382 | sg00000141971 | mvb12a-202 | 19 | 17422285 | 17425318 | + | lnc_RNA | retained_intron |
| 419895 | enst00000599638 | sg00000130518 | iqcn-205 | 19 | 18257099 | 18262618 | - | lnc_RNA | retained_intron |
| -421189 | enst00000526234 | sg00000141971 | mvb12a-203 | 19 | 17420122 | 17422965 | + | lnc_RNA | retained_intron |
| -421200 | enst00000543795 | sg00000141971 | mvb12a-212 | 19 | 17420111 | 17425332 | + | mRNA | protein_coding |
| -421229 | enst00000528515 | sg00000141971 | mvb12a-204 | 19 | 17420082 | 17424677 | + | mRNA | protein_coding |
| -421239 | enst00000529939 | sg00000141971 | mvb12a-211 | 19 | 17420072 | 17433724 | + | mRNA | protein_coding |
| -421247 | enst00000528732 | sg00000141971 | mvb12a-207 | 19 | 17420064 | 17420720 | + | lnc_RNA | retained_intron |
| -421263 | enst00000528997 | sg00000141971 | mvb12a-209 | 19 | 17420048 | 17421046 | + | lnc_RNA | retained_intron |
| -421264 | enst00000528659 | sg00000141971 | mvb12a-206 | 19 | 17420047 | 17421096 | + | lnc_RNA | processed_transcript |
| -421264 | enst00000317040 | sg00000141971 | mvb12a-201 | 19 | 17420047 | 17425332 | + | mRNA | protein_coding |
| -421537 | enst00000597028 | sg00000269053 | ac010319.3-201 | 19 | 17419305 | 17419774 | - | lnc_RNA | lncrna |
| -423023 | enst00000526892 | sg00000254503 | ac010319.1-201 | 19 | 17417031 | 17418288 | - | pseudogenic_transcript | processed_pseudogene |
| 431688 | enst00000595654 | sg00000130518 | iqcn-203 | 19 | 18267119 | 18274411 | - | mRNA | protein_coding |
| 431707 | enst00000599528 | sg00000130518 | iqcn-204 | 19 | 18267379 | 18274430 | - | mRNA | protein_coding |
| 431707 | enst00000593659 | sg00000130518 | iqcn-202 | 19 | 18267336 | 18274430 | - | mRNA | protein_coding |
| 431729 | enst00000392413 | sg00000130518 | iqcn-201 | 19 | 18257098 | 18274452 | - | mRNA | protein_coding |
| 431748 | enst00000608950 | sg00000130518 | iqcn-208 | 19 | 18267090 | 18274471 | - | mRNA | protein_coding |
| 431764 | enst00000600328 | sg00000130518 | iqcn-206 | 19 | 18257098 | 18274487 | - | mRNA | protein_coding |
| 431777 | enst00000600359 | sg00000130518 | iqcn-207 | 19 | 18257098 | 18274500 | - | mRNA | protein_coding |
| 431786 | enst00000612316 | sg00000130518 | iqcn-209 | 19 | 18257097 | 18274509 | - | mRNA | protein_coding |
| -435166 | enst00000600514 | sg00000141971 | mvb12a-214 | 19 | 17406145 | 17423799 | + | mRNA | protein_coding |
| -435196 | enst00000634568 | sg00000282851 | bispr-202 | 19 | 17406115 | 17414347 | + | lnc_RNA | lncrna |
| -435202 | enst00000529490 | sg00000141971 | mvb12a-210 | 19 | 17406109 | 17420130 | + | lnc_RNA | processed_transcript |
| -435207 | enst00000634942 | sg00000282851 | bispr-207 | 19 | 17406104 | 17419324 | + | lnc_RNA | lncrna |
| -435487 | enst00000634577 | sg00000282851 | bispr-203 | 19 | 17405824 | 17414468 | + | lnc_RNA | lncrna |
| -435488 | enst00000645376 | sg00000282851 | bispr-216 | 19 | 17405823 | 17413358 | + | lnc_RNA | lncrna |
| -435489 | enst00000635176 | sg00000282851 | bispr-209 | 19 | 17405822 | 17415656 | + | lnc_RNA | lncrna |
| -435489 | enst00000645062 | sg00000282851 | bispr-214 | 19 | 17405822 | 17415738 | + | lnc_RNA | lncrna |
| -435533 | enst00000635339 | sg00000282851 | bispr-210 | 19 | 17405778 | 17406359 | + | lnc_RNA | lncrna |
| -435535 | enst00000634731 | sg00000282851 | bispr-205 | 19 | 17405776 | 17413194 | + | lnc_RNA | lncrna |
| -435548 | enst00000635435 | sg00000282851 | bispr-211 | 19 | 17405763 | 17415005 | + | lnc_RNA | lncrna |
| -435562 | enst00000647283 | sg00000282851 | bispr-218 | 19 | 17405749 | 17415687 | + | lnc_RNA | lncrna |
| -435567 | enst00000634813 | sg00000282851 | bispr-206 | 19 | 17405744 | 17414449 | + | lnc_RNA | lncrna |
| -435568 | enst00000634675 | sg00000282851 | bispr-204 | 19 | 17405743 | 17415738 | + | lnc_RNA | lncrna |
| -435570 | enst00000528604 | sg00000141971 | mvb12a-205 | 19 | 17405741 | 17424989 | + | mRNA | protein_coding |
| -435570 | enst00000635572 | sg00000282851 | bispr-213 | 19 | 17405741 | 17413303 | + | lnc_RNA | lncrna |
| -435589 | enst00000645298 | sg00000282851 | bispr-215 | 19 | 17405722 | 17415734 | + | lnc_RNA | lncrna |
| -435589 | enst00000528911 | sg00000141971 | mvb12a-208 | 19 | 17405722 | 17423799 | + | mRNA | protein_coding |
| -435601 | enst00000634291 | sg00000282851 | bispr-201 | 19 | 17405710 | 17413397 | + | lnc_RNA | lncrna |
| -435608 | enst00000635060 | sg00000282851 | bispr-208 | 19 | 17405703 | 17415716 | + | lnc_RNA | lncrna |
| -435617 | enst00000635536 | sg00000282851 | bispr-212 | 19 | 17405694 | 17415729 | + | lnc_RNA | lncrna |
| -435625 | enst00000646744 | sg00000282851 | bispr-217 | 19 | 17405686 | 17414611 | + | lnc_RNA | lncrna |
| -435681 | enst00000252593 | sg00000130303 | bst2-201 | 19 | 17402939 | 17405630 | - | mRNA | protein_coding |
| -435781 | enst00000527220 | sg00000130303 | bst2-202 | 19 | 17403791 | 17405530 | - | lnc_RNA | processed_transcript |
| -436774 | enst00000533098 | sg00000130303 | bst2-203 | 19 | 17403241 | 17404537 | - | lnc_RNA | retained_intron |
| 438206 | enst00000600972 | sg00000130522 | jund-202 | 19 | 18280019 | 18280929 | - | mRNA | protein_coding |
| 438899 | enst00000252818 | sg00000130522 | jund-201 | 19 | 18279694 | 18281622 | - | mRNA | protein_coding |
| 439354 | enst00000583494 | sg00000267959 | mir3188-201 | 19 | 18282077 | 18282161 | + | miRNA | mirna |
| 442772 | enst00000467018 | sg00000241464 | rpl39p38-201 | 19 | 18285343 | 18285495 | - | pseudogenic_transcript | processed_pseudogene |
| -447153 | enst00000636079 | sg00000269720 | ccdc194-202 | 19 | 17390509 | 17394158 | - | mRNA | protein_coding |
| -449027 | enst00000597169 | sg00000269720 | ccdc194-201 | 19 | 17391429 | 17392284 | - | lnc_RNA | processed_transcript |
| -463969 | enst00000599426 | sg00000130300 | plvap-203 | 19 | 17365416 | 17377342 | - | mRNA | protein_coding |
| -463969 | enst00000252590 | sg00000130300 | plvap-201 | 19 | 17351455 | 17377342 | - | mRNA | protein_coding |
| 473536 | enst00000597776 | sg00000130520 | lsm4-205 | 19 | 18309751 | 18316259 | - | lnc_RNA | retained_intron |
| -475160 | enst00000595816 | sg00000130300 | plvap-202 | 19 | 17351450 | 17366151 | - | mRNA | protein_coding |
| 480337 | enst00000600289 | sg00000130520 | lsm4-206 | 19 | 18306916 | 18323060 | - | mRNA | nonsense_mediated_decay |
| 480348 | enst00000252816 | sg00000130520 | lsm4-201 | 19 | 18306907 | 18323071 | - | mRNA | protein_coding |
| 480374 | enst00000593564 | sg00000130520 | lsm4-202 | 19 | 18312169 | 18323097 | - | lnc_RNA | retained_intron |
| -480379 | enst00000597592 | sg00000269350 | ac010463.2-201 | 19 | 17360932 | 17362753 | + | lnc_RNA | lncrna |
| 480389 | enst00000594828 | sg00000130520 | lsm4-204 | 19 | 18309291 | 18323112 | - | mRNA | protein_coding |
| 480551 | enst00000593829 | sg00000130520 | lsm4-203 | 19 | 18306230 | 18323274 | - | mRNA | protein_coding |
| 490553 | enst00000465715 | sg00000239821 | rn7sl513p-201 | 19 | 18333276 | 18333573 | + | ncRNA | misc_rna |
| 497875 | enst00000604499 | sg00000130517 | pgpep1-209 | 19 | 18340598 | 18363678 | + | mRNA | protein_coding |
| 497875 | enst00000269919 | sg00000130517 | pgpep1-202 | 19 | 18340598 | 18369950 | + | mRNA | protein_coding |
| 497876 | enst00000595066 | sg00000130517 | pgpep1-203 | 19 | 18340599 | 18357857 | + | mRNA | protein_coding |
| 497886 | enst00000252813 | sg00000130517 | pgpep1-201 | 19 | 18340609 | 18364342 | + | mRNA | protein_coding |
| 497888 | enst00000596962 | sg00000130517 | pgpep1-205 | 19 | 18340611 | 18363998 | + | mRNA | nonsense_mediated_decay |
| 497891 | enst00000600283 | sg00000130517 | pgpep1-208 | 19 | 18340614 | 18364218 | + | mRNA | nonsense_mediated_decay |
| 497916 | enst00000597431 | sg00000130517 | pgpep1-206 | 19 | 18340639 | 18363688 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc