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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #101 | 1 | 43348388 | 43349760 | 1372 | 3 | 42 | 1.71241e-17 | 1.68613e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000671634 | sg00000287113 | al139289.2-201 | 1 | 43348288 | 43348844 | - | lnc_RNA | lncrna |
| 0 | enst00000643351 | sg00000117400 | mpl-204 | 1 | 43349263 | 43352736 | + | mRNA | protein_coding |
| 8898 | enst00000424948 | sg00000234694 | al139289.1-201 | 1 | 43354684 | 43358658 | - | lnc_RNA | lncrna |
| 9221 | enst00000310955 | sg00000117399 | cdc20-201 | 1 | 43358981 | 43363203 | + | mRNA | protein_coding |
| 9253 | enst00000372462 | sg00000117399 | cdc20-202 | 1 | 43359013 | 43363203 | + | mRNA | protein_coding |
| 10007 | enst00000478882 | sg00000117399 | cdc20-203 | 1 | 43359767 | 43360864 | + | lnc_RNA | processed_transcript |
| -10539 | enst00000413998 | sg00000117400 | mpl-202 | 1 | 43337849 | 43352772 | + | mRNA | protein_coding |
| -10539 | enst00000638732 | sg00000117400 | mpl-203 | 1 | 43337849 | 43349537 | + | lnc_RNA | retained_intron |
| -10570 | enst00000372470 | sg00000117400 | mpl-201 | 1 | 43337818 | 43354466 | + | mRNA | protein_coding |
| 11298 | enst00000482046 | sg00000117399 | cdc20-204 | 1 | 43361058 | 43363066 | + | lnc_RNA | processed_transcript |
| 14955 | enst00000621166 | sg00000283836 | mir6734-201 | 1 | 43364648 | 43364715 | - | miRNA | mirna |
| 15454 | enst00000478481 | sg00000066322 | elovl1-208 | 1 | 43364347 | 43365214 | - | lnc_RNA | processed_transcript |
| 15508 | enst00000468865 | sg00000066322 | elovl1-205 | 1 | 43363728 | 43365268 | - | lnc_RNA | processed_transcript |
| 16569 | enst00000479439 | sg00000066322 | elovl1-209 | 1 | 43364542 | 43366329 | - | lnc_RNA | processed_transcript |
| 16827 | enst00000470769 | sg00000066322 | elovl1-206 | 1 | 43363875 | 43366587 | - | lnc_RNA | processed_transcript |
| 17344 | enst00000497569 | sg00000066322 | elovl1-215 | 1 | 43363994 | 43367104 | - | lnc_RNA | processed_transcript |
| 17656 | enst00000482302 | sg00000066322 | elovl1-211 | 1 | 43364015 | 43367416 | - | lnc_RNA | processed_transcript |
| 17856 | enst00000479686 | sg00000066322 | elovl1-210 | 1 | 43364560 | 43367616 | - | lnc_RNA | processed_transcript |
| 17978 | enst00000621943 | sg00000066322 | elovl1-216 | 1 | 43363398 | 43367738 | - | mRNA | protein_coding |
| 17978 | enst00000497050 | sg00000066322 | elovl1-214 | 1 | 43364050 | 43367738 | - | lnc_RNA | processed_transcript |
| 18205 | enst00000496932 | sg00000066322 | elovl1-213 | 1 | 43364576 | 43367965 | - | lnc_RNA | processed_transcript |
| 18239 | enst00000487209 | sg00000066322 | elovl1-212 | 1 | 43363836 | 43367999 | - | lnc_RNA | processed_transcript |
| 18243 | enst00000465321 | sg00000066322 | elovl1-204 | 1 | 43364544 | 43368003 | - | lnc_RNA | processed_transcript |
| 18247 | enst00000464204 | sg00000066322 | elovl1-203 | 1 | 43363756 | 43368007 | - | lnc_RNA | processed_transcript |
| 18251 | enst00000372458 | sg00000066322 | elovl1-201 | 1 | 43363401 | 43368011 | - | mRNA | protein_coding |
| 18265 | enst00000470968 | sg00000066322 | elovl1-207 | 1 | 43363771 | 43368025 | - | lnc_RNA | processed_transcript |
| 18314 | enst00000413844 | sg00000066322 | elovl1-202 | 1 | 43363398 | 43368074 | - | mRNA | protein_coding |
| -28925 | enst00000492874 | sg00000066056 | tie1-209 | 1 | 43319463 | 43320423 | + | lnc_RNA | processed_transcript |
| -30458 | enst00000492599 | sg00000066056 | tie1-208 | 1 | 43317930 | 43319482 | + | lnc_RNA | processed_transcript |
| -35096 | enst00000473014 | sg00000066056 | tie1-204 | 1 | 43313292 | 43320880 | + | lnc_RNA | processed_transcript |
| -35200 | enst00000461061 | sg00000066056 | tie1-202 | 1 | 43313188 | 43315291 | + | lnc_RNA | processed_transcript |
| -35214 | enst00000471187 | sg00000066056 | tie1-203 | 1 | 43313174 | 43314150 | + | lnc_RNA | processed_transcript |
| 35353 | enst00000436713 | sg00000229431 | med8-as1-201 | 1 | 43385113 | 43389155 | + | lnc_RNA | lncrna |
| 37171 | enst00000460803 | sg00000159479 | med8-204 | 1 | 43385673 | 43386931 | - | lnc_RNA | retained_intron |
| 37887 | enst00000473560 | sg00000159479 | med8-205 | 1 | 43385978 | 43387647 | - | lnc_RNA | retained_intron |
| -39341 | enst00000488437 | sg00000066056 | tie1-207 | 1 | 43309047 | 43312601 | + | lnc_RNA | processed_transcript |
| 40024 | enst00000372455 | sg00000159479 | med8-202 | 1 | 43384726 | 43389784 | - | mRNA | protein_coding |
| 40040 | enst00000372457 | sg00000159479 | med8-203 | 1 | 43383917 | 43389800 | - | mRNA | protein_coding |
| 40048 | enst00000290663 | sg00000159479 | med8-201 | 1 | 43383917 | 43389808 | - | mRNA | protein_coding |
| 40122 | enst00000372450 | sg00000198198 | szt2-202 | 1 | 43389882 | 43406894 | + | mRNA | protein_coding |
| 40136 | enst00000562955 | sg00000198198 | szt2-209 | 1 | 43389896 | 43454247 | + | mRNA | protein_coding |
| 40139 | enst00000634258 | sg00000198198 | szt2-210 | 1 | 43389899 | 43454247 | + | mRNA | protein_coding |
| 40139 | enst00000406439 | sg00000198198 | szt2-203 | 1 | 43389899 | 43412791 | + | mRNA | nonsense_mediated_decay |
| 40139 | enst00000638631 | sg00000198198 | szt2-212 | 1 | 43389899 | 43405951 | + | lnc_RNA | retained_intron |
| 40191 | enst00000357658 | sg00000198198 | szt2-201 | 1 | 43389951 | 43410577 | + | lnc_RNA | retained_intron |
| -41246 | enst00000480269 | sg00000066056 | tie1-205 | 1 | 43307142 | 43309045 | + | lnc_RNA | processed_transcript |
| -45938 | enst00000485125 | sg00000066056 | tie1-206 | 1 | 43302450 | 43305343 | + | lnc_RNA | processed_transcript |
| -47316 | enst00000538015 | sg00000066056 | tie1-210 | 1 | 43301072 | 43308968 | + | mRNA | protein_coding |
| -47406 | enst00000372476 | sg00000066056 | tie1-201 | 1 | 43300982 | 43323108 | + | mRNA | protein_coding |
| 54644 | enst00000639852 | sg00000198198 | szt2-216 | 1 | 43404404 | 43422104 | + | mRNA | nonsense_mediated_decay |
| -62771 | enst00000423420 | sg00000253313 | c1orf210-201 | 1 | 43282661 | 43285617 | - | mRNA | protein_coding |
| -62807 | enst00000523677 | sg00000253313 | c1orf210-202 | 1 | 43281877 | 43285581 | - | mRNA | protein_coding |
| 70997 | enst00000470139 | sg00000198198 | szt2-205 | 1 | 43420757 | 43429489 | + | mRNA | nonsense_mediated_decay |
| -77442 | enst00000456751 | sg00000179178 | tmem125-204 | 1 | 43270946 | 43272769 | + | mRNA | protein_coding |
| -77452 | enst00000461557 | sg00000117395 | ebna1bp2-203 | 1 | 43171610 | 43270936 | - | lnc_RNA | processed_transcript |
| -78341 | enst00000442284 | sg00000179178 | tmem125-203 | 1 | 43270047 | 43270820 | + | lnc_RNA | processed_transcript |
| -78363 | enst00000432792 | sg00000179178 | tmem125-201 | 1 | 43270025 | 43274002 | + | mRNA | protein_coding |
| -78405 | enst00000439858 | sg00000179178 | tmem125-202 | 1 | 43269983 | 43274002 | + | mRNA | protein_coding |
| 80082 | enst00000478140 | sg00000198198 | szt2-208 | 1 | 43429842 | 43430697 | + | lnc_RNA | retained_intron |
| 81275 | enst00000648058 | sg00000198198 | szt2-218 | 1 | 43431035 | 43451157 | + | lnc_RNA | retained_intron |
| 81371 | enst00000638642 | sg00000198198 | szt2-213 | 1 | 43431131 | 43431769 | + | lnc_RNA | retained_intron |
| 82397 | enst00000649403 | sg00000198198 | szt2-219 | 1 | 43432157 | 43450727 | + | lnc_RNA | processed_transcript |
| 82717 | enst00000638769 | sg00000198198 | szt2-214 | 1 | 43432477 | 43433095 | + | lnc_RNA | retained_intron |
| 85948 | enst00000639197 | sg00000198198 | szt2-215 | 1 | 43435708 | 43437911 | + | lnc_RNA | retained_intron |
| -86478 | enst00000466927 | sg00000117395 | ebna1bp2-205 | 1 | 43181682 | 43261910 | - | lnc_RNA | processed_transcript |
| 87746 | enst00000470897 | sg00000198198 | szt2-206 | 1 | 43437506 | 43438149 | + | lnc_RNA | processed_transcript |
| 88263 | enst00000471177 | sg00000198198 | szt2-207 | 1 | 43438023 | 43439638 | + | lnc_RNA | processed_transcript |
| 93858 | enst00000638263 | sg00000198198 | szt2-211 | 1 | 43443618 | 43451081 | + | lnc_RNA | retained_intron |
| 95492 | enst00000460536 | sg00000198198 | szt2-204 | 1 | 43445252 | 43452650 | + | lnc_RNA | retained_intron |
| 95877 | enst00000640484 | sg00000198198 | szt2-217 | 1 | 43445637 | 43450908 | + | lnc_RNA | retained_intron |
| -97997 | enst00000474566 | sg00000117395 | ebna1bp2-207 | 1 | 43194684 | 43250391 | - | lnc_RNA | processed_transcript |
| 98779 | enst00000615179 | sg00000274975 | mir6735-201 | 1 | 43448539 | 43448611 | + | miRNA | mirna |
| 98884 | enst00000396885 | sg00000229372 | szt2-as1-201 | 1 | 43447776 | 43448644 | - | lnc_RNA | lncrna |
| 101980 | enst00000483618 | sg00000178922 | hyi-209 | 1 | 43451153 | 43451740 | - | lnc_RNA | retained_intron |
| 102459 | enst00000496142 | sg00000178922 | hyi-212 | 1 | 43451667 | 43452219 | - | lnc_RNA | retained_intron |
| 103692 | enst00000470662 | sg00000178922 | hyi-208 | 1 | 43451158 | 43453452 | - | mRNA | protein_coding |
| 103707 | enst00000487366 | sg00000178922 | hyi-211 | 1 | 43451158 | 43453467 | - | mRNA | protein_coding |
| 103915 | enst00000372430 | sg00000178922 | hyi-203 | 1 | 43451158 | 43453675 | - | mRNA | protein_coding |
| 103956 | enst00000372433 | sg00000178922 | hyi-205 | 1 | 43451154 | 43453716 | - | mRNA | protein_coding |
| 104048 | enst00000469587 | sg00000178922 | hyi-207 | 1 | 43453161 | 43453808 | - | lnc_RNA | retained_intron |
| 104065 | enst00000372434 | sg00000178922 | hyi-206 | 1 | 43451154 | 43453825 | - | mRNA | protein_coding |
| 104088 | enst00000486909 | sg00000178922 | hyi-210 | 1 | 43451320 | 43453848 | - | mRNA | protein_coding |
| 104149 | enst00000372427 | sg00000178922 | hyi-202 | 1 | 43451160 | 43453909 | - | lnc_RNA | retained_intron |
| 104167 | enst00000444386 | sg00000229348 | hyi-as1-201 | 1 | 43453927 | 43456995 | + | lnc_RNA | lncrna |
| 104203 | enst00000372432 | sg00000178922 | hyi-204 | 1 | 43451158 | 43453963 | - | mRNA | protein_coding |
| 104229 | enst00000583037 | sg00000178922 | hyi-213 | 1 | 43451003 | 43453989 | - | mRNA | protein_coding |
| 104229 | enst00000372425 | sg00000178922 | hyi-201 | 1 | 43451003 | 43453989 | - | mRNA | protein_coding |
| -133032 | enst00000428122 | sg00000243710 | cfap57-202 | 1 | 43215356 | 43222278 | + | mRNA | nonsense_mediated_decay |
| -151971 | enst00000362370 | sg00000199240 | rna5sp46-201 | 1 | 43196417 | 43196536 | + | pseudogenic_transcript | rrna_pseudogene |
| -163510 | enst00000534615 | sg00000243710 | cfap57-207 | 1 | 43184878 | 43186785 | + | lnc_RNA | retained_intron |
| 175427 | enst00000496043 | sg00000142949 | ptprf-214 | 1 | 43525187 | 43553519 | + | lnc_RNA | processed_transcript |
| -175818 | enst00000431635 | sg00000117395 | ebna1bp2-202 | 1 | 43164175 | 43172570 | - | mRNA | protein_coding |
| -175837 | enst00000491223 | sg00000117395 | ebna1bp2-209 | 1 | 43170818 | 43172551 | - | lnc_RNA | processed_transcript |
| -175966 | enst00000533339 | sg00000243710 | cfap57-206 | 1 | 43172422 | 43210118 | + | mRNA | nonsense_mediated_decay |
| -175974 | enst00000525227 | sg00000243710 | cfap57-203 | 1 | 43172414 | 43181679 | + | mRNA | nonsense_mediated_decay |
| -176044 | enst00000529956 | sg00000243710 | cfap57-205 | 1 | 43172344 | 43183614 | + | mRNA | protein_coding |
| -176058 | enst00000610710 | sg00000243710 | cfap57-208 | 1 | 43172330 | 43254355 | + | mRNA | protein_coding |
| -176058 | enst00000528956 | sg00000243710 | cfap57-204 | 1 | 43172330 | 43210878 | + | mRNA | protein_coding |
| -176106 | enst00000483082 | sg00000117395 | ebna1bp2-208 | 1 | 43171441 | 43172282 | - | lnc_RNA | processed_transcript |
| -176120 | enst00000472982 | sg00000117395 | ebna1bp2-206 | 1 | 43170944 | 43172268 | - | lnc_RNA | processed_transcript |
| -176128 | enst00000236051 | sg00000117395 | ebna1bp2-201 | 1 | 43164184 | 43172260 | - | mRNA | protein_coding |
| -176239 | enst00000372492 | sg00000243710 | cfap57-201 | 1 | 43172149 | 43254358 | + | mRNA | protein_coding |
| -176676 | enst00000635723 | sg00000284410 | mir6733-201 | 1 | 43171652 | 43171712 | - | miRNA | mirna |
| -177267 | enst00000463906 | sg00000117395 | ebna1bp2-204 | 1 | 43164346 | 43171121 | - | lnc_RNA | processed_transcript |
| 178802 | enst00000481019 | sg00000142949 | ptprf-213 | 1 | 43528562 | 43553539 | + | lnc_RNA | processed_transcript |
| 181116 | enst00000617451 | sg00000142949 | ptprf-216 | 1 | 43530876 | 43579285 | + | mRNA | protein_coding |
| 181123 | enst00000359947 | sg00000142949 | ptprf-201 | 1 | 43530883 | 43623666 | + | mRNA | protein_coding |
| 181130 | enst00000438120 | sg00000142949 | ptprf-209 | 1 | 43530890 | 43622357 | + | mRNA | protein_coding |
| 181143 | enst00000436724 | sg00000142949 | ptprf-207 | 1 | 43530903 | 43580078 | + | lnc_RNA | processed_transcript |
| 188438 | enst00000372405 | sg00000142949 | ptprf-202 | 1 | 43538198 | 43580078 | + | lnc_RNA | processed_transcript |
| 195316 | enst00000437607 | sg00000142949 | ptprf-208 | 1 | 43545076 | 43579284 | + | mRNA | protein_coding |
| -195630 | enst00000481753 | sg00000186973 | fam183a-206 | 1 | 43152758 | 43156396 | + | lnc_RNA | retained_intron |
| -200465 | enst00000409396 | sg00000186973 | fam183a-203 | 1 | 43147923 | 43156279 | + | mRNA | protein_coding |
| -200471 | enst00000410025 | sg00000186973 | fam183a-204 | 1 | 43147917 | 43156396 | + | mRNA | nonsense_mediated_decay |
| -200484 | enst00000335282 | sg00000186973 | fam183a-201 | 1 | 43147904 | 43156396 | + | mRNA | protein_coding |
| -200521 | enst00000409337 | sg00000186973 | fam183a-202 | 1 | 43147867 | 43156396 | + | lnc_RNA | processed_transcript |
| -203235 | enst00000410048 | sg00000186973 | fam183a-205 | 1 | 43145153 | 43156396 | + | mRNA | protein_coding |
| 232720 | enst00000467464 | sg00000142949 | ptprf-211 | 1 | 43582480 | 43591118 | + | lnc_RNA | processed_transcript |
| 241261 | enst00000412568 | sg00000142949 | ptprf-204 | 1 | 43591021 | 43622283 | + | mRNA | protein_coding |
| 241293 | enst00000429895 | sg00000142949 | ptprf-206 | 1 | 43591053 | 43623654 | + | mRNA | protein_coding |
| 241690 | enst00000414879 | sg00000142949 | ptprf-205 | 1 | 43591450 | 43622842 | + | mRNA | protein_coding |
| -244302 | enst00000622380 | sg00000277513 | al161637.1-201 | 1 | 43104086 | 43104497 | + | pseudogenic_transcript | processed_pseudogene |
| 248314 | enst00000496447 | sg00000142949 | ptprf-215 | 1 | 43598074 | 43623666 | + | lnc_RNA | processed_transcript |
| 249079 | enst00000372407 | sg00000142949 | ptprf-203 | 1 | 43598839 | 43623663 | + | mRNA | protein_coding |
| 255822 | enst00000463041 | sg00000142949 | ptprf-210 | 1 | 43605582 | 43606868 | + | lnc_RNA | processed_transcript |
| 263380 | enst00000477970 | sg00000142949 | ptprf-212 | 1 | 43613140 | 43622863 | + | lnc_RNA | processed_transcript |
| 300389 | enst00000372396 | sg00000066135 | kdm4a-201 | 1 | 43650149 | 43705518 | + | mRNA | protein_coding |
| 300389 | enst00000645057 | sg00000284989 | al451062.4-201 | 1 | 43650149 | 43931014 | + | mRNA | nonsense_mediated_decay |
| 300776 | enst00000463151 | sg00000066135 | kdm4a-202 | 1 | 43650536 | 43667021 | + | mRNA | protein_coding |
| 303546 | enst00000485249 | sg00000066135 | kdm4a-205 | 1 | 43653306 | 43667021 | + | mRNA | nonsense_mediated_decay |
| 316525 | enst00000472265 | sg00000066135 | kdm4a-203 | 1 | 43666285 | 43667062 | + | lnc_RNA | retained_intron |
| -324751 | enst00000636464 | sg00000283136 | al161637.2-201 | 1 | 43023549 | 43023637 | - | snRNA | snrna |
| 340830 | enst00000481296 | sg00000066135 | kdm4a-204 | 1 | 43690590 | 43692278 | + | lnc_RNA | retained_intron |
| 354709 | enst00000434346 | sg00000236200 | kdm4a-as1-203 | 1 | 43702097 | 43704469 | - | lnc_RNA | lncrna |
| 354986 | enst00000453015 | sg00000236200 | kdm4a-as1-205 | 1 | 43703395 | 43704746 | - | lnc_RNA | lncrna |
| 356064 | enst00000532911 | sg00000126091 | st3gal3-235 | 1 | 43705824 | 43838249 | + | mRNA | nonsense_mediated_decay |
| 356064 | enst00000646096 | sg00000126091 | st3gal3-272 | 1 | 43705824 | 43894420 | + | mRNA | nonsense_mediated_decay |
| -356950 | enst00000384526 | sg00000207256 | rnu6-880p-201 | 1 | 42991438 | 42991544 | + | snRNA | snrna |
| 357570 | enst00000418149 | sg00000236200 | kdm4a-as1-202 | 1 | 43704314 | 43707330 | - | lnc_RNA | lncrna |
| 357581 | enst00000439057 | sg00000236200 | kdm4a-as1-204 | 1 | 43699923 | 43707341 | - | lnc_RNA | lncrna |
| 357605 | enst00000663424 | sg00000236200 | kdm4a-as1-207 | 1 | 43685123 | 43707365 | - | lnc_RNA | lncrna |
| 357609 | enst00000659644 | sg00000236200 | kdm4a-as1-206 | 1 | 43699840 | 43707369 | - | lnc_RNA | lncrna |
| 357737 | enst00000347631 | sg00000126091 | st3gal3-205 | 1 | 43707497 | 43931165 | + | mRNA | protein_coding |
| 357764 | enst00000643886 | sg00000126091 | st3gal3-250 | 1 | 43707524 | 43894416 | + | mRNA | nonsense_mediated_decay |
| 357764 | enst00000643597 | sg00000126091 | st3gal3-248 | 1 | 43707524 | 43931141 | + | mRNA | nonsense_mediated_decay |
| 357767 | enst00000372372 | sg00000126091 | st3gal3-218 | 1 | 43707527 | 43930891 | + | mRNA | protein_coding |
| 357773 | enst00000330208 | sg00000126091 | st3gal3-202 | 1 | 43707533 | 43931165 | + | mRNA | protein_coding |
| 357773 | enst00000335430 | sg00000126091 | st3gal3-204 | 1 | 43707533 | 43931165 | + | mRNA | protein_coding |
| 357773 | enst00000545417 | sg00000126091 | st3gal3-239 | 1 | 43707533 | 43931165 | + | mRNA | protein_coding |
| 357773 | enst00000361400 | sg00000126091 | st3gal3-209 | 1 | 43707533 | 43931162 | + | mRNA | protein_coding |
| 357776 | enst00000372374 | sg00000126091 | st3gal3-219 | 1 | 43707536 | 43931122 | + | mRNA | protein_coding |
| 357776 | enst00000643252 | sg00000126091 | st3gal3-246 | 1 | 43707536 | 43931131 | + | mRNA | protein_coding |
| 357776 | enst00000647237 | sg00000126091 | st3gal3-282 | 1 | 43707536 | 43931140 | + | mRNA | protein_coding |
| 357776 | enst00000642331 | sg00000126091 | st3gal3-241 | 1 | 43707536 | 43931151 | + | mRNA | protein_coding |
| 357778 | enst00000361392 | sg00000126091 | st3gal3-208 | 1 | 43707538 | 43931159 | + | mRNA | protein_coding |
| 357779 | enst00000646109 | sg00000126091 | st3gal3-273 | 1 | 43707539 | 43838283 | + | mRNA | protein_coding |
| 357780 | enst00000533997 | sg00000126091 | st3gal3-238 | 1 | 43707540 | 43930221 | + | mRNA | nonsense_mediated_decay |
| 357781 | enst00000353126 | sg00000126091 | st3gal3-207 | 1 | 43707541 | 43931146 | + | mRNA | protein_coding |
| 357783 | enst00000643283 | sg00000126091 | st3gal3-247 | 1 | 43707543 | 43931077 | + | mRNA | nonsense_mediated_decay |
| 357783 | enst00000645640 | sg00000126091 | st3gal3-265 | 1 | 43707543 | 43931144 | + | mRNA | nonsense_mediated_decay |
| 357783 | enst00000642934 | sg00000126091 | st3gal3-244 | 1 | 43707543 | 43931139 | + | mRNA | protein_coding |
| 357784 | enst00000351035 | sg00000126091 | st3gal3-206 | 1 | 43707544 | 43931139 | + | mRNA | protein_coding |
| 357785 | enst00000489897 | sg00000126091 | st3gal3-225 | 1 | 43707545 | 43930221 | + | mRNA | nonsense_mediated_decay |
| 357785 | enst00000642949 | sg00000126091 | st3gal3-245 | 1 | 43707545 | 43931160 | + | mRNA | nonsense_mediated_decay |
| 357787 | enst00000530154 | sg00000126091 | st3gal3-230 | 1 | 43707547 | 43920217 | + | mRNA | nonsense_mediated_decay |
| 357787 | enst00000645705 | sg00000126091 | st3gal3-268 | 1 | 43707547 | 43931129 | + | mRNA | nonsense_mediated_decay |
| 357787 | enst00000645142 | sg00000126091 | st3gal3-261 | 1 | 43707547 | 43931146 | + | mRNA | nonsense_mediated_decay |
| 357787 | enst00000646971 | sg00000126091 | st3gal3-278 | 1 | 43707547 | 43931146 | + | mRNA | protein_coding |
| 357789 | enst00000646027 | sg00000126091 | st3gal3-269 | 1 | 43707549 | 43931122 | + | mRNA | nonsense_mediated_decay |
| 357791 | enst00000646069 | sg00000126091 | st3gal3-271 | 1 | 43707551 | 43931139 | + | mRNA | nonsense_mediated_decay |
| 357793 | enst00000642504 | sg00000126091 | st3gal3-242 | 1 | 43707553 | 43930847 | + | mRNA | nonsense_mediated_decay |
| 357795 | enst00000647148 | sg00000126091 | st3gal3-281 | 1 | 43707555 | 43931151 | + | mRNA | protein_coding |
| 357796 | enst00000262915 | sg00000126091 | st3gal3-201 | 1 | 43707556 | 43931130 | + | mRNA | protein_coding |
| 357798 | enst00000479383 | sg00000126091 | st3gal3-223 | 1 | 43707558 | 43838261 | + | mRNA | nonsense_mediated_decay |
| 357806 | enst00000646776 | sg00000126091 | st3gal3-277 | 1 | 43707566 | 43739322 | + | lnc_RNA | retained_intron |
| 357806 | enst00000647482 | sg00000126091 | st3gal3-284 | 1 | 43707566 | 43931122 | + | mRNA | nonsense_mediated_decay |
| 357812 | enst00000645394 | sg00000126091 | st3gal3-264 | 1 | 43707572 | 43931009 | + | mRNA | nonsense_mediated_decay |
| 357866 | enst00000647128 | sg00000126091 | st3gal3-279 | 1 | 43707626 | 43930313 | + | mRNA | nonsense_mediated_decay |
| 357880 | enst00000484868 | sg00000126091 | st3gal3-224 | 1 | 43707640 | 43772734 | + | mRNA | protein_coding |
| 357883 | enst00000461066 | sg00000126091 | st3gal3-220 | 1 | 43707643 | 43838311 | + | mRNA | nonsense_mediated_decay |
| 357887 | enst00000361746 | sg00000126091 | st3gal3-210 | 1 | 43707647 | 43931152 | + | mRNA | protein_coding |
| 357888 | enst00000645034 | sg00000126091 | st3gal3-259 | 1 | 43707648 | 43922584 | + | mRNA | protein_coding |
| 357925 | enst00000645165 | sg00000126091 | st3gal3-263 | 1 | 43707685 | 43931141 | + | mRNA | nonsense_mediated_decay |
| 357930 | enst00000647134 | sg00000126091 | st3gal3-280 | 1 | 43707690 | 43931151 | + | mRNA | nonsense_mediated_decay |
| 358081 | enst00000644195 | sg00000126091 | st3gal3-253 | 1 | 43707841 | 43931129 | + | mRNA | protein_coding |
| 358378 | enst00000398804 | sg00000236200 | kdm4a-as1-201 | 1 | 43699765 | 43708138 | - | lnc_RNA | lncrna |
| 366707 | enst00000637979 | sg00000283414 | al451062.3-201 | 1 | 43716467 | 43716556 | + | snRNA | snrna |
| 377583 | enst00000437753 | sg00000229444 | al451062.1-201 | 1 | 43709392 | 43727343 | - | lnc_RNA | lncrna |
| 386473 | enst00000372368 | sg00000126091 | st3gal3-216 | 1 | 43736233 | 43931122 | + | mRNA | protein_coding |
| 386473 | enst00000642194 | sg00000126091 | st3gal3-240 | 1 | 43736233 | 43931127 | + | mRNA | nonsense_mediated_decay |
| 386477 | enst00000646686 | sg00000126091 | st3gal3-276 | 1 | 43736237 | 43931140 | + | mRNA | protein_coding |
| 386503 | enst00000361812 | sg00000126091 | st3gal3-211 | 1 | 43736263 | 43930709 | + | mRNA | protein_coding |
| 386503 | enst00000469715 | sg00000126091 | st3gal3-222 | 1 | 43736263 | 43930522 | + | mRNA | nonsense_mediated_decay |
| 386503 | enst00000533212 | sg00000126091 | st3gal3-236 | 1 | 43736263 | 43930221 | + | mRNA | nonsense_mediated_decay |
| 386503 | enst00000531993 | sg00000126091 | st3gal3-234 | 1 | 43736263 | 43930221 | + | mRNA | protein_coding |
| 386503 | enst00000531816 | sg00000126091 | st3gal3-233 | 1 | 43736263 | 43930221 | + | mRNA | protein_coding |
| 386503 | enst00000530581 | sg00000126091 | st3gal3-231 | 1 | 43736263 | 43930221 | + | mRNA | nonsense_mediated_decay |
| 386503 | enst00000490541 | sg00000126091 | st3gal3-227 | 1 | 43736263 | 43930221 | + | mRNA | nonsense_mediated_decay |
| 386503 | enst00000372369 | sg00000126091 | st3gal3-217 | 1 | 43736263 | 43930221 | + | mRNA | protein_coding |
| 386503 | enst00000372366 | sg00000126091 | st3gal3-214 | 1 | 43736263 | 43930972 | + | mRNA | protein_coding |
| 386503 | enst00000372365 | sg00000126091 | st3gal3-213 | 1 | 43736263 | 43930221 | + | mRNA | protein_coding |
| 386503 | enst00000531451 | sg00000126091 | st3gal3-232 | 1 | 43736263 | 43930202 | + | mRNA | protein_coding |
| 386503 | enst00000372362 | sg00000126091 | st3gal3-212 | 1 | 43736263 | 43930202 | + | mRNA | protein_coding |
| 386503 | enst00000646416 | sg00000126091 | st3gal3-275 | 1 | 43736263 | 43842785 | + | lnc_RNA | retained_intron |
| 386503 | enst00000528371 | sg00000126091 | st3gal3-229 | 1 | 43736263 | 43930221 | + | mRNA | protein_coding |
| 386503 | enst00000372367 | sg00000126091 | st3gal3-215 | 1 | 43736263 | 43930221 | + | mRNA | protein_coding |
| 386519 | enst00000645117 | sg00000126091 | st3gal3-260 | 1 | 43736279 | 43930760 | + | mRNA | protein_coding |
| -386524 | enst00000640492 | sg00000283973 | ac099795.1-202 | 1 | 42959158 | 42961864 | - | lnc_RNA | lncrna |
| 386560 | enst00000533933 | sg00000126091 | st3gal3-237 | 1 | 43736320 | 43931141 | + | mRNA | protein_coding |
| 386576 | enst00000332628 | sg00000126091 | st3gal3-203 | 1 | 43736336 | 43930988 | + | mRNA | protein_coding |
| 386581 | enst00000643813 | sg00000126091 | st3gal3-249 | 1 | 43736341 | 43931146 | + | mRNA | nonsense_mediated_decay |
| 386581 | enst00000644922 | sg00000126091 | st3gal3-257 | 1 | 43736341 | 43931139 | + | mRNA | protein_coding |
| -386597 | enst00000640236 | sg00000283973 | ac099795.1-201 | 1 | 42959065 | 42961791 | - | lnc_RNA | lncrna |
| 386609 | enst00000644287 | sg00000126091 | st3gal3-254 | 1 | 43736369 | 43931092 | + | mRNA | protein_coding |
| -387029 | enst00000658437 | sg00000283973 | ac099795.1-203 | 1 | 42959288 | 42961359 | - | lnc_RNA | lncrna |
| -389284 | enst00000416689 | sg00000227533 | slc2a1-as1-201 | 1 | 42959104 | 42976428 | + | lnc_RNA | retained_intron |
| -389288 | enst00000664148 | sg00000227533 | slc2a1-as1-204 | 1 | 42959100 | 42996814 | + | lnc_RNA | lncrna |
| -389310 | enst00000653200 | sg00000227533 | slc2a1-as1-203 | 1 | 42959078 | 42996800 | + | lnc_RNA | lncrna |
| -389339 | enst00000431759 | sg00000227533 | slc2a1-as1-202 | 1 | 42959049 | 42983358 | + | lnc_RNA | lncrna |
| -389520 | enst00000630821 | sg00000117394 | slc2a1-209 | 1 | 42942966 | 42958868 | - | lnc_RNA | retained_intron |
| -389520 | enst00000426263 | sg00000117394 | slc2a1-203 | 1 | 42925375 | 42958868 | - | mRNA | protein_coding |
| -389520 | enst00000415851 | sg00000117394 | slc2a1-202 | 1 | 42930960 | 42958868 | - | lnc_RNA | retained_intron |
| -389529 | enst00000625233 | sg00000117394 | slc2a1-206 | 1 | 42930319 | 42958859 | - | lnc_RNA | retained_intron |
| -389529 | enst00000460369 | sg00000117394 | slc2a1-204 | 1 | 42951616 | 42958859 | - | mRNA | protein_coding |
| -389540 | enst00000630287 | sg00000117394 | slc2a1-208 | 1 | 42926156 | 42958848 | - | mRNA | nonsense_mediated_decay |
| -389552 | enst00000372500 | sg00000117394 | slc2a1-201 | 1 | 42930698 | 42958836 | - | mRNA | protein_coding |
| 393711 | enst00000427515 | sg00000233674 | al451062.2-201 | 1 | 43743471 | 43743741 | + | pseudogenic_transcript | processed_pseudogene |
| -395747 | enst00000639582 | sg00000284138 | atp6v0cp4-201 | 1 | 42952202 | 42952641 | - | pseudogenic_transcript | processed_pseudogene |
| -396372 | enst00000629908 | sg00000117394 | slc2a1-207 | 1 | 42951616 | 42952016 | - | lnc_RNA | retained_intron |
| -405150 | enst00000475162 | sg00000117394 | slc2a1-205 | 1 | 42926796 | 42943238 | - | mRNA | protein_coding |
| -418460 | enst00000669445 | sg00000117394 | slc2a1-210 | 1 | 42929640 | 42929928 | - | mRNA | nonsense_mediated_decay |
| 442342 | enst00000647503 | sg00000126091 | st3gal3-285 | 1 | 43792102 | 43931127 | + | mRNA | protein_coding |
| 442347 | enst00000461375 | sg00000126091 | st3gal3-221 | 1 | 43792107 | 43920550 | + | lnc_RNA | processed_transcript |
| -445156 | enst00000439215 | sg00000225099 | atp6v1e1p1-201 | 1 | 42903232 | 42903912 | + | pseudogenic_transcript | processed_pseudogene |
| 449870 | enst00000646113 | sg00000126091 | st3gal3-274 | 1 | 43799630 | 43801692 | + | lnc_RNA | retained_intron |
| -455958 | enst00000417517 | sg00000237090 | al512353.3-201 | 1 | 42891094 | 42892430 | - | pseudogenic_transcript | processed_pseudogene |
| -459621 | enst00000448759 | sg00000233708 | al512353.2-201 | 1 | 42886597 | 42888767 | - | pseudogenic_transcript | processed_pseudogene |
| 465167 | enst00000642780 | sg00000126091 | st3gal3-243 | 1 | 43814927 | 43930953 | + | mRNA | nonsense_mediated_decay |
| 488490 | enst00000644645 | sg00000126091 | st3gal3-256 | 1 | 43838250 | 43931139 | + | mRNA | nonsense_mediated_decay |
| 488862 | enst00000635807 | sg00000283477 | mir6079-201 | 1 | 43838622 | 43838683 | + | miRNA | mirna |
| -497701 | enst00000630961 | sg00000164011 | znf691-208 | 1 | 42850687 | 42852473 | + | mRNA | protein_coding |
| -498833 | enst00000372503 | sg00000164011 | znf691-202 | 1 | 42849555 | 42851754 | + | mRNA | protein_coding |
| -499097 | enst00000397034 | sg00000164011 | znf691-207 | 1 | 42849291 | 42851264 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc