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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #103 | 1 | 90835271 | 90836499 | 1228 | 3 | 40 | 2.02093e-17 | 1.95518e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000670363 | sg00000233593 | linc02609-222 | 1 | 90830137 | 90836428 | - | lnc_RNA | lncrna |
| 0 | enst00000662449 | sg00000285532 | linc02788-202 | 1 | 90835660 | 90849460 | + | lnc_RNA | lncrna |
| 0 | enst00000666920 | sg00000233593 | linc02609-218 | 1 | 90834740 | 90836117 | - | lnc_RNA | lncrna |
| 0 | enst00000652632 | sg00000233593 | linc02609-210 | 1 | 90831953 | 90836174 | - | lnc_RNA | lncrna |
| 0 | enst00000671243 | sg00000233593 | linc02609-225 | 1 | 90831873 | 90835562 | - | lnc_RNA | lncrna |
| 0 | enst00000670437 | sg00000233593 | linc02609-223 | 1 | 90830079 | 90836174 | - | lnc_RNA | lncrna |
| 0 | enst00000455680 | sg00000233593 | linc02609-203 | 1 | 90829547 | 90836161 | - | lnc_RNA | retained_intron |
| -582 | enst00000637260 | sg00000233593 | linc02609-209 | 1 | 90831878 | 90834689 | - | lnc_RNA | lncrna |
| -582 | enst00000636917 | sg00000233593 | linc02609-208 | 1 | 90831874 | 90834689 | - | lnc_RNA | lncrna |
| -582 | enst00000635959 | sg00000233593 | linc02609-207 | 1 | 90831788 | 90834689 | - | lnc_RNA | lncrna |
| -3070 | enst00000435649 | sg00000233593 | linc02609-201 | 1 | 90782984 | 90832201 | - | lnc_RNA | lncrna |
| 5088 | enst00000650406 | sg00000285532 | linc02788-201 | 1 | 90841587 | 90849472 | + | lnc_RNA | lncrna |
| 14623 | enst00000655113 | sg00000225446 | linc01763-202 | 1 | 90851122 | 90854607 | + | lnc_RNA | lncrna |
| 15029 | enst00000671059 | sg00000233593 | linc02609-224 | 1 | 90769086 | 90851528 | - | lnc_RNA | lncrna |
| 15119 | enst00000606660 | sg00000233593 | linc02609-204 | 1 | 90829547 | 90851618 | - | lnc_RNA | retained_intron |
| 15121 | enst00000670028 | sg00000233593 | linc02609-221 | 1 | 90837187 | 90851620 | - | lnc_RNA | lncrna |
| 15131 | enst00000657053 | sg00000233593 | linc02609-213 | 1 | 90782513 | 90851630 | - | lnc_RNA | lncrna |
| 15132 | enst00000668679 | sg00000233593 | linc02609-219 | 1 | 90782984 | 90851631 | - | lnc_RNA | lncrna |
| 15142 | enst00000653770 | sg00000233593 | linc02609-211 | 1 | 90807474 | 90851641 | - | lnc_RNA | lncrna |
| 15148 | enst00000634619 | sg00000233593 | linc02609-205 | 1 | 90782984 | 90851647 | - | lnc_RNA | lncrna |
| 15154 | enst00000655784 | sg00000233593 | linc02609-212 | 1 | 90830076 | 90851653 | - | lnc_RNA | lncrna |
| 15154 | enst00000669273 | sg00000233593 | linc02609-220 | 1 | 90782513 | 90851653 | - | lnc_RNA | lncrna |
| 15154 | enst00000664774 | sg00000233593 | linc02609-217 | 1 | 90830418 | 90851653 | - | lnc_RNA | lncrna |
| 15158 | enst00000659034 | sg00000233593 | linc02609-215 | 1 | 90778451 | 90851657 | - | lnc_RNA | lncrna |
| 15159 | enst00000658618 | sg00000233593 | linc02609-214 | 1 | 90828555 | 90851658 | - | lnc_RNA | lncrna |
| 15159 | enst00000635581 | sg00000233593 | linc02609-206 | 1 | 90782984 | 90851658 | - | lnc_RNA | lncrna |
| 15159 | enst00000443802 | sg00000233593 | linc02609-202 | 1 | 90829593 | 90851658 | - | lnc_RNA | retained_intron |
| 15260 | enst00000425185 | sg00000225446 | linc01763-201 | 1 | 90851759 | 90855253 | + | lnc_RNA | lncrna |
| 26421 | enst00000606898 | sg00000272094 | ac091614.1-201 | 1 | 90860550 | 90862920 | - | lnc_RNA | lncrna |
| -45599 | enst00000664159 | sg00000233593 | linc02609-216 | 1 | 90782984 | 90789672 | - | lnc_RNA | lncrna |
| 57113 | enst00000420457 | sg00000232882 | phka1p1-201 | 1 | 90892992 | 90893612 | - | pseudogenic_transcript | processed_pseudogene |
| 81892 | enst00000482709 | sg00000122482 | znf644-209 | 1 | 90916791 | 90918391 | - | lnc_RNA | processed_transcript |
| 99029 | enst00000479798 | sg00000122482 | znf644-207 | 1 | 90916490 | 90935528 | - | lnc_RNA | processed_transcript |
| 103621 | enst00000621077 | sg00000122482 | znf644-212 | 1 | 90937883 | 90940120 | - | mRNA | protein_coding |
| -115657 | enst00000662386 | sg00000287076 | ac092805.1-203 | 1 | 90719614 | 90725607 | + | lnc_RNA | lncrna |
| -115695 | enst00000660766 | sg00000287076 | ac092805.1-201 | 1 | 90719576 | 90725458 | + | lnc_RNA | lncrna |
| -115695 | enst00000659815 | sg00000287076 | ac092805.1-202 | 1 | 90719576 | 90725620 | + | lnc_RNA | lncrna |
| -117969 | enst00000370445 | sg00000143032 | barhl2-201 | 1 | 90711539 | 90717302 | - | mRNA | protein_coding |
| 145871 | enst00000474405 | sg00000122482 | znf644-206 | 1 | 90972744 | 90982370 | - | lnc_RNA | processed_transcript |
| -177521 | enst00000362796 | sg00000199666 | snord3g-201 | 1 | 90657750 | 90657964 | + | snoRNA | snorna |
| 184958 | enst00000347275 | sg00000122482 | znf644-202 | 1 | 90915304 | 91021457 | - | mRNA | protein_coding |
| 184974 | enst00000370440 | sg00000122482 | znf644-204 | 1 | 90915298 | 91021473 | - | mRNA | protein_coding |
| 185226 | enst00000482467 | sg00000122482 | znf644-208 | 1 | 91020529 | 91021725 | - | lnc_RNA | processed_transcript |
| 185515 | enst00000467231 | sg00000122482 | znf644-205 | 1 | 90916390 | 91022014 | - | lnc_RNA | processed_transcript |
| 185536 | enst00000337393 | sg00000122482 | znf644-201 | 1 | 90915304 | 91022035 | - | mRNA | protein_coding |
| 185556 | enst00000495966 | sg00000122482 | znf644-210 | 1 | 91020448 | 91022055 | - | lnc_RNA | processed_transcript |
| 185582 | enst00000498303 | sg00000122482 | znf644-211 | 1 | 90940949 | 91022081 | - | lnc_RNA | processed_transcript |
| 185773 | enst00000361321 | sg00000122482 | znf644-203 | 1 | 90916185 | 91022272 | - | mRNA | protein_coding |
| 187420 | enst00000425640 | sg00000232393 | rpl5p6-201 | 1 | 91023919 | 91024804 | + | pseudogenic_transcript | processed_pseudogene |
| -301799 | enst00000435832 | sg00000229201 | linc02787-201 | 1 | 90510910 | 90533472 | - | lnc_RNA | lncrna |
| -414875 | enst00000655087 | sg00000287372 | al627316.1-203 | 1 | 90399424 | 90420396 | - | lnc_RNA | lncrna |
| -415124 | enst00000653744 | sg00000287372 | al627316.1-201 | 1 | 90388193 | 90420147 | - | lnc_RNA | lncrna |
| 425126 | enst00000384090 | sg00000206817 | bx323048.1-201 | 1 | 91261625 | 91261724 | + | ncRNA | misc_rna |
| -434290 | enst00000661553 | sg00000287372 | al627316.1-202 | 1 | 90389826 | 90400981 | - | lnc_RNA | lncrna |
| 491870 | enst00000401028 | sg00000215873 | fen1p1-201 | 1 | 91328369 | 91329513 | + | pseudogenic_transcript | processed_pseudogene |
| 492438 | enst00000497520 | sg00000162669 | hfm1-209 | 1 | 91316140 | 91328937 | - | lnc_RNA | processed_transcript |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc