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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #111 | 12 | 132270984 | 132272270 | 1286 | 3 | 41 | 3.58043e-17 | 3.20787e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 2948 | enst00000535208 | sg00000182870 | galnt9-205 | 12 | 132257851 | 132275218 | - | lnc_RNA | processed_transcript |
| 2954 | enst00000614360 | sg00000182870 | galnt9-210 | 12 | 132272693 | 132275224 | - | lnc_RNA | processed_transcript |
| 3121 | enst00000543317 | sg00000256943 | ac148477.3-201 | 12 | 132275391 | 132276506 | + | lnc_RNA | lncrna |
| 3174 | enst00000376617 | sg00000256943 | ac148477.3-202 | 12 | 132275444 | 132278329 | + | lnc_RNA | lncrna |
| 5079 | enst00000537762 | sg00000256542 | ac148477.2-201 | 12 | 132277349 | 132280900 | + | lnc_RNA | lncrna |
| 8630 | enst00000625164 | sg00000278872 | ac148477.5-201 | 12 | 132279256 | 132280900 | - | unconfirmed_transcript | tec |
| 10544 | enst00000613430 | sg00000277011 | ac148477.4-201 | 12 | 132282814 | 132284606 | + | lnc_RNA | lncrna |
| -13242 | enst00000411988 | sg00000182870 | galnt9-203 | 12 | 132196509 | 132257742 | - | mRNA | protein_coding |
| 14201 | enst00000540493 | sg00000182870 | galnt9-207 | 12 | 132283164 | 132286471 | - | lnc_RNA | retained_intron |
| 57079 | enst00000424720 | sg00000182870 | galnt9-204 | 12 | 132247440 | 132329349 | - | lnc_RNA | retained_intron |
| 57319 | enst00000328957 | sg00000182870 | galnt9-201 | 12 | 132196372 | 132329589 | - | mRNA | protein_coding |
| 57580 | enst00000537720 | sg00000255916 | ac148477.1-201 | 12 | 132329850 | 132331575 | + | lnc_RNA | lncrna |
| 59735 | enst00000623871 | sg00000279113 | ac148477.7-201 | 12 | 132332005 | 132332432 | + | unconfirmed_transcript | tec |
| -64825 | enst00000538356 | sg00000182870 | galnt9-206 | 12 | 132201137 | 132206159 | - | mRNA | protein_coding |
| -64956 | enst00000397325 | sg00000182870 | galnt9-202 | 12 | 132196372 | 132206028 | - | mRNA | protein_coding |
| -65182 | enst00000542942 | sg00000182870 | galnt9-209 | 12 | 132203507 | 132205802 | - | mRNA | protein_coding |
| -65192 | enst00000541995 | sg00000182870 | galnt9-208 | 12 | 132197073 | 132205792 | - | mRNA | protein_coding |
| -70548 | enst00000623965 | sg00000279480 | ac138466.4-201 | 12 | 132200436 | 132201287 | + | unconfirmed_transcript | tec |
| 72207 | enst00000651513 | sg00000286008 | ac148477.10-201 | 12 | 132344477 | 132345352 | + | lnc_RNA | lncrna |
| 79585 | enst00000624298 | sg00000279704 | ac148477.8-201 | 12 | 132351855 | 132352322 | + | unconfirmed_transcript | tec |
| -80771 | enst00000535242 | sg00000256312 | ac138466.1-201 | 12 | 132190213 | 132190997 | + | lnc_RNA | lncrna |
| -81289 | enst00000538731 | sg00000256576 | linc02361-201 | 12 | 132186735 | 132189695 | - | lnc_RNA | lncrna |
| 88464 | enst00000623746 | sg00000279023 | ac148477.6-201 | 12 | 132360734 | 132361198 | + | unconfirmed_transcript | tec |
| 90540 | enst00000623974 | sg00000280150 | ac148477.9-201 | 12 | 132362810 | 132363348 | + | unconfirmed_transcript | tec |
| -101161 | enst00000619983 | sg00000276693 | ac138466.3-201 | 12 | 132169823 | 132170043 | + | lnc_RNA | lncrna |
| -120143 | enst00000538784 | sg00000184967 | noc4l-203 | 12 | 132150841 | 132152473 | + | lnc_RNA | retained_intron |
| -123327 | enst00000535343 | sg00000184967 | noc4l-202 | 12 | 132147657 | 132151617 | + | lnc_RNA | processed_transcript |
| -126220 | enst00000541954 | sg00000184967 | noc4l-204 | 12 | 132144764 | 132148904 | + | mRNA | protein_coding |
| -126527 | enst00000330579 | sg00000184967 | noc4l-201 | 12 | 132144457 | 132152468 | + | mRNA | protein_coding |
| -126665 | enst00000397333 | sg00000185163 | ddx51-202 | 12 | 132136594 | 132144319 | - | mRNA | protein_coding |
| -127345 | enst00000329073 | sg00000185163 | ddx51-201 | 12 | 132139855 | 132143639 | - | lnc_RNA | retained_intron |
| -128104 | enst00000545991 | sg00000185163 | ddx51-205 | 12 | 132140422 | 132142880 | - | lnc_RNA | retained_intron |
| -128611 | enst00000546058 | sg00000185163 | ddx51-206 | 12 | 132141006 | 132142373 | - | lnc_RNA | retained_intron |
| -130163 | enst00000541489 | sg00000185163 | ddx51-204 | 12 | 132139113 | 132140821 | - | lnc_RNA | retained_intron |
| -131011 | enst00000462829 | sg00000185163 | ddx51-203 | 12 | 132137435 | 132139973 | - | lnc_RNA | retained_intron |
| -144220 | enst00000540993 | sg00000256804 | ac138466.2-201 | 12 | 132126461 | 132126764 | - | pseudogenic_transcript | processed_pseudogene |
| -152838 | enst00000475841 | sg00000185684 | ep400p1-208 | 12 | 132118146 | 132131639 | + | lnc_RNA | processed_transcript |
| 152938 | enst00000622182 | sg00000274373 | ac148476.1-201 | 12 | 132424504 | 132425208 | - | lnc_RNA | lncrna |
| -166963 | enst00000641289 | sg00000185684 | ep400p1-214 | 12 | 132104021 | 132127177 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -170164 | enst00000624002 | sg00000279640 | ac138466.5-201 | 12 | 132100013 | 132100820 | - | unconfirmed_transcript | tec |
| -180333 | enst00000332441 | sg00000185684 | ep400p1-201 | 12 | 132090651 | 132126340 | + | lnc_RNA | processed_transcript |
| 184890 | enst00000542627 | sg00000256783 | ac079031.1-201 | 12 | 132457160 | 132460024 | + | lnc_RNA | lncrna |
| -185758 | enst00000539205 | sg00000185684 | ep400p1-211 | 12 | 132085226 | 132104695 | + | lnc_RNA | processed_transcript |
| -185935 | enst00000407361 | sg00000185684 | ep400p1-204 | 12 | 132085049 | 132105069 | + | lnc_RNA | processed_transcript |
| -186021 | enst00000613241 | sg00000185684 | ep400p1-213 | 12 | 132084963 | 132088520 | + | lnc_RNA | processed_transcript |
| -186504 | enst00000392352 | sg00000185684 | ep400p1-203 | 12 | 132084480 | 132108899 | + | lnc_RNA | processed_transcript |
| -186653 | enst00000443539 | sg00000185684 | ep400p1-205 | 12 | 132084331 | 132108898 | + | lnc_RNA | processed_transcript |
| -186664 | enst00000389560 | sg00000185684 | ep400p1-202 | 12 | 132084320 | 132108899 | + | lnc_RNA | processed_transcript |
| -186671 | enst00000454179 | sg00000185684 | ep400p1-207 | 12 | 132084313 | 132104897 | + | lnc_RNA | processed_transcript |
| -186671 | enst00000488030 | sg00000185684 | ep400p1-209 | 12 | 132084313 | 132126197 | + | lnc_RNA | processed_transcript |
| -186694 | enst00000539351 | sg00000185684 | ep400p1-212 | 12 | 132084290 | 132085509 | + | lnc_RNA | processed_transcript |
| -186699 | enst00000537558 | sg00000185684 | ep400p1-210 | 12 | 132084285 | 132085797 | + | lnc_RNA | processed_transcript |
| -186701 | enst00000446190 | sg00000185684 | ep400p1-206 | 12 | 132084283 | 132123580 | + | lnc_RNA | processed_transcript |
| -187205 | enst00000619709 | sg00000274670 | ac137590.2-201 | 12 | 132083540 | 132083779 | - | lnc_RNA | lncrna |
| 189972 | enst00000537742 | sg00000256875 | ac079031.2-201 | 12 | 132462242 | 132462856 | + | lnc_RNA | lncrna |
| -190524 | enst00000542422 | sg00000257000 | ac137590.1-201 | 12 | 132077803 | 132080460 | - | lnc_RNA | lncrna |
| -195283 | enst00000611118 | sg00000183495 | ep400-205 | 12 | 132075701 | 132078910 | + | lnc_RNA | retained_intron |
| -202885 | enst00000616136 | sg00000183495 | ep400-208 | 12 | 132068099 | 132078913 | + | lnc_RNA | retained_intron |
| -206076 | enst00000611739 | sg00000183495 | ep400-206 | 12 | 132064908 | 132078910 | + | lnc_RNA | retained_intron |
| -208389 | enst00000330386 | sg00000183495 | ep400-201 | 12 | 132062595 | 132080457 | + | mRNA | protein_coding |
| 217281 | enst00000650108 | sg00000112787 | fbrsl1-208 | 12 | 132489551 | 132585188 | + | mRNA | protein_coding |
| 217281 | enst00000434748 | sg00000112787 | fbrsl1-201 | 12 | 132489551 | 132585188 | + | mRNA | protein_coding |
| 234760 | enst00000542061 | sg00000112787 | fbrsl1-204 | 12 | 132507030 | 132511952 | + | mRNA | protein_coding |
| -239760 | enst00000386157 | sg00000208892 | snora49-201 | 12 | 132031224 | 132031359 | + | snoRNA | snorna |
| -242038 | enst00000611841 | sg00000183495 | ep400-207 | 12 | 132028946 | 132051016 | + | lnc_RNA | retained_intron |
| 278459 | enst00000624087 | sg00000280287 | ac131212.3-201 | 12 | 132550729 | 132554947 | + | unconfirmed_transcript | tec |
| 287777 | enst00000539264 | sg00000112787 | fbrsl1-203 | 12 | 132560047 | 132570104 | + | lnc_RNA | processed_transcript |
| 287883 | enst00000543360 | sg00000112787 | fbrsl1-206 | 12 | 132560153 | 132570039 | + | lnc_RNA | processed_transcript |
| 292801 | enst00000622917 | sg00000279700 | ac131212.2-201 | 12 | 132565071 | 132566425 | + | unconfirmed_transcript | tec |
| 298882 | enst00000543453 | sg00000112787 | fbrsl1-207 | 12 | 132571152 | 132572594 | + | lnc_RNA | processed_transcript |
| 299591 | enst00000542306 | sg00000112787 | fbrsl1-205 | 12 | 132571861 | 132582267 | + | lnc_RNA | retained_intron |
| 300257 | enst00000537804 | sg00000112787 | fbrsl1-202 | 12 | 132572527 | 132576861 | + | lnc_RNA | processed_transcript |
| 309727 | enst00000612332 | sg00000277052 | mir6763-201 | 12 | 132581997 | 132582061 | + | miRNA | mirna |
| -321013 | enst00000333577 | sg00000183495 | ep400-203 | 12 | 131949971 | 131995012 | + | mRNA | protein_coding |
| -321021 | enst00000332482 | sg00000183495 | ep400-202 | 12 | 131949963 | 131990675 | + | mRNA | protein_coding |
| -321042 | enst00000389561 | sg00000183495 | ep400-204 | 12 | 131949942 | 132080460 | + | mRNA | protein_coding |
| 321428 | enst00000613771 | sg00000277186 | ac131212.1-201 | 12 | 132593031 | 132593698 | - | lnc_RNA | lncrna |
| -330057 | enst00000543754 | sg00000177192 | pus1-209 | 12 | 131940927 | 131943859 | + | lnc_RNA | retained_intron |
| 333994 | enst00000545517 | sg00000204583 | lrcol1-204 | 12 | 132604015 | 132606264 | - | mRNA | nonsense_mediated_decay |
| -336342 | enst00000621809 | sg00000273568 | ac131009.3-201 | 12 | 131934642 | 131934928 | + | lnc_RNA | lncrna |
| 338104 | enst00000622710 | sg00000204583 | lrcol1-206 | 12 | 132603169 | 132610374 | - | mRNA | nonsense_mediated_decay |
| 338127 | enst00000544018 | sg00000204583 | lrcol1-203 | 12 | 132603150 | 132610397 | - | mRNA | nonsense_mediated_decay |
| 338181 | enst00000536100 | sg00000204583 | lrcol1-202 | 12 | 132605814 | 132610451 | - | lnc_RNA | retained_intron |
| 338273 | enst00000616042 | sg00000204583 | lrcol1-205 | 12 | 132604614 | 132610543 | - | lnc_RNA | retained_intron |
| 338312 | enst00000376608 | sg00000204583 | lrcol1-201 | 12 | 132603151 | 132610582 | - | mRNA | protein_coding |
| -341219 | enst00000537484 | sg00000177192 | pus1-206 | 12 | 131929765 | 131941422 | + | mRNA | protein_coding |
| -341229 | enst00000535067 | sg00000177192 | pus1-205 | 12 | 131929755 | 131943857 | + | mRNA | protein_coding |
| -341395 | enst00000544213 | sg00000177192 | pus1-210 | 12 | 131929589 | 131932833 | + | mRNA | protein_coding |
| -341633 | enst00000539078 | sg00000255992 | ac131009.1-201 | 12 | 131924736 | 131929351 | - | lnc_RNA | lncrna |
| -341677 | enst00000456665 | sg00000177192 | pus1-204 | 12 | 131929307 | 131932833 | + | mRNA | protein_coding |
| -341680 | enst00000544662 | sg00000177192 | pus1-211 | 12 | 131929304 | 131932680 | + | lnc_RNA | retained_intron |
| -341702 | enst00000538037 | sg00000177192 | pus1-207 | 12 | 131929282 | 131939275 | + | mRNA | protein_coding |
| -341708 | enst00000542167 | sg00000177192 | pus1-208 | 12 | 131929276 | 131943859 | + | mRNA | protein_coding |
| -341708 | enst00000376649 | sg00000177192 | pus1-202 | 12 | 131929276 | 131945896 | + | mRNA | protein_coding |
| -341742 | enst00000322060 | sg00000177192 | pus1-201 | 12 | 131929242 | 131941983 | + | mRNA | protein_coding |
| -341784 | enst00000443358 | sg00000177192 | pus1-203 | 12 | 131929200 | 131943859 | + | mRNA | protein_coding |
| 346506 | enst00000643471 | sg00000187848 | p2rx2-208 | 12 | 132618776 | 132622388 | + | mRNA | protein_coding |
| 346547 | enst00000343948 | sg00000187848 | p2rx2-201 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| 346547 | enst00000350048 | sg00000187848 | p2rx2-203 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| 346547 | enst00000351222 | sg00000187848 | p2rx2-204 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| 346547 | enst00000352418 | sg00000187848 | p2rx2-205 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| 346547 | enst00000449132 | sg00000187848 | p2rx2-206 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| 346547 | enst00000348800 | sg00000187848 | p2rx2-202 | 12 | 132618817 | 132621979 | + | mRNA | protein_coding |
| 346547 | enst00000542301 | sg00000187848 | p2rx2-207 | 12 | 132618817 | 132622340 | + | mRNA | protein_coding |
| 350703 | enst00000623606 | sg00000280311 | ac131212.4-201 | 12 | 132621999 | 132622973 | - | unconfirmed_transcript | tec |
| -350917 | enst00000540568 | sg00000177169 | ulk1-203 | 12 | 131920067 | 131922281 | + | lnc_RNA | retained_intron |
| -351743 | enst00000544718 | sg00000177169 | ulk1-207 | 12 | 131919241 | 131921951 | + | lnc_RNA | retained_intron |
| -352682 | enst00000540647 | sg00000177169 | ulk1-204 | 12 | 131918302 | 131921550 | + | lnc_RNA | retained_intron |
| 353681 | enst00000541627 | sg00000177084 | pole-217 | 12 | 132623753 | 132625951 | - | lnc_RNA | retained_intron |
| -355041 | enst00000541761 | sg00000177169 | ulk1-205 | 12 | 131915943 | 131919385 | + | lnc_RNA | retained_intron |
| 360146 | enst00000538196 | sg00000177084 | pole-211 | 12 | 132625298 | 132632416 | - | lnc_RNA | processed_transcript |
| 360287 | enst00000534922 | sg00000177084 | pole-206 | 12 | 132624555 | 132632557 | - | lnc_RNA | retained_intron |
| 361898 | enst00000544692 | sg00000177084 | pole-219 | 12 | 132624706 | 132634168 | - | lnc_RNA | retained_intron |
| -362365 | enst00000542313 | sg00000177169 | ulk1-206 | 12 | 131908619 | 131909169 | + | lnc_RNA | retained_intron |
| 363715 | enst00000544414 | sg00000177084 | pole-218 | 12 | 132632508 | 132635985 | - | lnc_RNA | retained_intron |
| 363722 | enst00000441786 | sg00000177084 | pole-204 | 12 | 132626311 | 132635992 | - | mRNA | nonsense_mediated_decay |
| 363730 | enst00000544870 | sg00000177084 | pole-220 | 12 | 132626267 | 132636000 | - | mRNA | nonsense_mediated_decay |
| 363755 | enst00000416953 | sg00000177084 | pole-202 | 12 | 132633971 | 132636025 | - | lnc_RNA | retained_intron |
| -364494 | enst00000537421 | sg00000177169 | ulk1-202 | 12 | 131906490 | 131909996 | + | lnc_RNA | retained_intron |
| 366899 | enst00000541213 | sg00000177084 | pole-216 | 12 | 132632448 | 132639169 | - | lnc_RNA | retained_intron |
| 369988 | enst00000434528 | sg00000177084 | pole-203 | 12 | 132623768 | 132642258 | - | mRNA | nonsense_mediated_decay |
| -374484 | enst00000624048 | sg00000279283 | ac131009.4-201 | 12 | 131896500 | 131898239 | + | unconfirmed_transcript | tec |
| -376362 | enst00000321867 | sg00000177169 | ulk1-201 | 12 | 131894622 | 131923150 | + | mRNA | protein_coding |
| 377095 | enst00000540987 | sg00000177084 | pole-215 | 12 | 132648546 | 132649365 | - | lnc_RNA | retained_intron |
| 379137 | enst00000503265 | sg00000177084 | pole-205 | 12 | 132649353 | 132651407 | - | lnc_RNA | processed_transcript |
| 388643 | enst00000536445 | sg00000177084 | pole-209 | 12 | 132649321 | 132660913 | - | lnc_RNA | retained_intron |
| 393120 | enst00000672002 | sg00000177084 | pole-222 | 12 | 132623776 | 132665390 | - | mRNA | nonsense_mediated_decay |
| 400963 | enst00000545015 | sg00000177084 | pole-221 | 12 | 132672544 | 132673233 | - | lnc_RNA | retained_intron |
| 401371 | enst00000539215 | sg00000177084 | pole-212 | 12 | 132672281 | 132673641 | - | lnc_RNA | processed_transcript |
| 404228 | enst00000535934 | sg00000177084 | pole-208 | 12 | 132672627 | 132676498 | - | lnc_RNA | retained_intron |
| 409009 | enst00000539618 | sg00000177084 | pole-214 | 12 | 132680531 | 132681279 | - | lnc_RNA | retained_intron |
| -413564 | enst00000542763 | sg00000256955 | ac131009.2-201 | 12 | 131857420 | 131864538 | + | lnc_RNA | lncrna |
| 415058 | enst00000535270 | sg00000177084 | pole-207 | 12 | 132624690 | 132687328 | - | mRNA | protein_coding |
| 415072 | enst00000320574 | sg00000177084 | pole-201 | 12 | 132623762 | 132687342 | - | mRNA | protein_coding |
| 415077 | enst00000537064 | sg00000177084 | pole-210 | 12 | 132624263 | 132687347 | - | mRNA | nonsense_mediated_decay |
| 415095 | enst00000539357 | sg00000177084 | pole-213 | 12 | 132681028 | 132687365 | - | lnc_RNA | retained_intron |
| 415106 | enst00000672742 | sg00000177084 | pole-223 | 12 | 132623776 | 132687376 | - | mRNA | nonsense_mediated_decay |
| 415317 | enst00000317479 | sg00000176894 | pxmp2-201 | 12 | 132687587 | 132704985 | + | mRNA | protein_coding |
| 415372 | enst00000543589 | sg00000176894 | pxmp2-205 | 12 | 132687642 | 132704985 | + | mRNA | protein_coding |
| 415779 | enst00000537262 | sg00000256632 | ac135586.2-201 | 12 | 132688049 | 132714912 | + | lnc_RNA | lncrna |
| 417993 | enst00000539093 | sg00000176894 | pxmp2-204 | 12 | 132690263 | 132704900 | + | mRNA | nonsense_mediated_decay |
| 418044 | enst00000428960 | sg00000176894 | pxmp2-202 | 12 | 132690314 | 132704898 | + | mRNA | protein_coding |
| -421149 | enst00000535271 | sg00000198598 | mmp17-205 | 12 | 131849835 | 131851332 | + | lnc_RNA | retained_intron |
| 423675 | enst00000454379 | sg00000176894 | pxmp2-203 | 12 | 132695945 | 132701684 | + | mRNA | protein_coding |
| -425689 | enst00000535004 | sg00000198598 | mmp17-203 | 12 | 131845295 | 131851367 | + | mRNA | protein_coding |
| -426023 | enst00000542648 | sg00000198598 | mmp17-209 | 12 | 131844961 | 131850062 | + | mRNA | protein_coding |
| -426114 | enst00000537848 | sg00000198598 | mmp17-207 | 12 | 131844870 | 131851030 | + | mRNA | nonsense_mediated_decay |
| -429216 | enst00000542142 | sg00000198598 | mmp17-208 | 12 | 131841768 | 131844721 | + | lnc_RNA | retained_intron |
| -430248 | enst00000535182 | sg00000198598 | mmp17-204 | 12 | 131840736 | 131845391 | + | lnc_RNA | processed_transcript |
| -430959 | enst00000534865 | sg00000198598 | mmp17-202 | 12 | 131840025 | 131849981 | + | mRNA | protein_coding |
| -432928 | enst00000535291 | sg00000198598 | mmp17-206 | 12 | 131838056 | 131851783 | + | mRNA | protein_coding |
| 438549 | enst00000317555 | sg00000247077 | pgam5-201 | 12 | 132710819 | 132719166 | + | mRNA | protein_coding |
| 438572 | enst00000498926 | sg00000247077 | pgam5-203 | 12 | 132710842 | 132722734 | + | mRNA | protein_coding |
| 438812 | enst00000543955 | sg00000247077 | pgam5-204 | 12 | 132711082 | 132721314 | + | mRNA | protein_coding |
| -442444 | enst00000545790 | sg00000198598 | mmp17-211 | 12 | 131828540 | 131840747 | + | mRNA | protein_coding |
| 442483 | enst00000454808 | sg00000247077 | pgam5-202 | 12 | 132714753 | 132721128 | + | mRNA | protein_coding |
| -442578 | enst00000545671 | sg00000198598 | mmp17-210 | 12 | 131828406 | 131841736 | + | mRNA | protein_coding |
| -442591 | enst00000360564 | sg00000198598 | mmp17-201 | 12 | 131828393 | 131851771 | + | mRNA | protein_coding |
| 451787 | enst00000364599 | sg00000201469 | rna5sp379-201 | 12 | 132723945 | 132724057 | - | pseudogenic_transcript | rrna_pseudogene |
| -455616 | enst00000363613 | sg00000200483 | rnu6-1017p-201 | 12 | 131815263 | 131815368 | - | snRNA | snrna |
| 459830 | enst00000542657 | sg00000176915 | ankle2-210 | 12 | 132727133 | 132732100 | - | mRNA | protein_coding |
| 459940 | enst00000542282 | sg00000176915 | ankle2-208 | 12 | 132726806 | 132732210 | - | mRNA | protein_coding |
| 462853 | enst00000538766 | sg00000176915 | ankle2-206 | 12 | 132727350 | 132735123 | - | mRNA | protein_coding |
| 463169 | enst00000542374 | sg00000176915 | ankle2-209 | 12 | 132727286 | 132735439 | - | lnc_RNA | processed_transcript |
| 466637 | enst00000505031 | sg00000176915 | ankle2-203 | 12 | 132729723 | 132738907 | - | lnc_RNA | retained_intron |
| -469550 | enst00000363646 | sg00000200516 | rna5sp378-201 | 12 | 131801315 | 131801434 | - | pseudogenic_transcript | rrna_pseudogene |
| 470288 | enst00000439231 | sg00000176915 | ankle2-202 | 12 | 132730233 | 132742558 | - | lnc_RNA | retained_intron |
| 470984 | enst00000538591 | sg00000176915 | ankle2-205 | 12 | 132734968 | 132743254 | - | lnc_RNA | retained_intron |
| 472886 | enst00000539323 | sg00000256108 | ac135586.1-201 | 12 | 132745156 | 132745729 | + | pseudogenic_transcript | processed_pseudogene |
| -474866 | enst00000537582 | sg00000061936 | sfswap-206 | 12 | 131796118 | 131799682 | + | lnc_RNA | retained_intron |
| 475750 | enst00000535036 | sg00000176915 | ankle2-204 | 12 | 132735407 | 132748020 | - | mRNA | nonsense_mediated_decay |
| 476757 | enst00000546061 | sg00000176915 | ankle2-212 | 12 | 132743239 | 132749027 | - | lnc_RNA | processed_transcript |
| 479064 | enst00000545623 | sg00000176915 | ankle2-211 | 12 | 132737043 | 132751334 | - | lnc_RNA | retained_intron |
| -487516 | enst00000539506 | sg00000061936 | sfswap-208 | 12 | 131783468 | 131799737 | + | lnc_RNA | processed_transcript |
| 489543 | enst00000539605 | sg00000176915 | ankle2-207 | 12 | 132725668 | 132761813 | - | lnc_RNA | retained_intron |
| 489562 | enst00000357997 | sg00000176915 | ankle2-201 | 12 | 132725503 | 132761832 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc