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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #113 | 1 | 18482252 | 18483305 | 1053 | 3 | 38 | 6.59555e-17 | 5.80467e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -1270 | enst00000400664 | sg00000179023 | klhdc7a-201 | 1 | 18480982 | 18486126 | + | mRNA | protein_coding |
| 29813 | enst00000596113 | sg00000235282 | dynll1p3-201 | 1 | 18513118 | 18513383 | + | pseudogenic_transcript | processed_pseudogene |
| -96423 | enst00000420211 | sg00000225387 | al591896.1-201 | 1 | 18385829 | 18388514 | + | lnc_RNA | lncrna |
| -106295 | enst00000473951 | sg00000117154 | igsf21-203 | 1 | 18375957 | 18376920 | + | lnc_RNA | processed_transcript |
| 112109 | enst00000450125 | sg00000225478 | al031737.1-201 | 1 | 18595414 | 18595636 | + | pseudogenic_transcript | processed_pseudogene |
| -120885 | enst00000497331 | sg00000117154 | igsf21-204 | 1 | 18361367 | 18378483 | + | lnc_RNA | retained_intron |
| 147541 | enst00000420770 | sg00000009709 | pax7-203 | 1 | 18630846 | 18748866 | + | mRNA | protein_coding |
| 147701 | enst00000375375 | sg00000009709 | pax7-201 | 1 | 18631006 | 18736138 | + | mRNA | protein_coding |
| 148219 | enst00000400661 | sg00000009709 | pax7-202 | 1 | 18631524 | 18736102 | + | mRNA | protein_coding |
| -203407 | enst00000412684 | sg00000117154 | igsf21-202 | 1 | 18278845 | 18376367 | + | lnc_RNA | processed_transcript |
| -302906 | enst00000419667 | sg00000230035 | igsf21-as1-201 | 1 | 18166929 | 18179346 | - | lnc_RNA | lncrna |
| -372863 | enst00000624418 | sg00000280222 | al365209.1-201 | 1 | 18109389 | 18115861 | + | unconfirmed_transcript | tec |
| -374454 | enst00000251296 | sg00000117154 | igsf21-201 | 1 | 18107798 | 18378483 | + | mRNA | protein_coding |
| 376377 | enst00000375371 | sg00000179002 | tas1r2-201 | 1 | 18839599 | 18859682 | - | mRNA | protein_coding |
| 399970 | enst00000577305 | sg00000265606 | mir4695-201 | 1 | 18883202 | 18883275 | - | miRNA | mirna |
| 402314 | enst00000454547 | sg00000159423 | aldh4a1-204 | 1 | 18882560 | 18885619 | - | lnc_RNA | processed_transcript |
| 407586 | enst00000538309 | sg00000159423 | aldh4a1-205 | 1 | 18872733 | 18890891 | - | mRNA | protein_coding |
| 413843 | enst00000408735 | sg00000221662 | mir1290-201 | 1 | 18897071 | 18897148 | - | miRNA | mirna |
| -416595 | enst00000569711 | sg00000261781 | linc01654-201 | 1 | 18065657 | 18074412 | + | lnc_RNA | lncrna |
| 419223 | enst00000538839 | sg00000159423 | aldh4a1-206 | 1 | 18871432 | 18902528 | - | mRNA | protein_coding |
| 419248 | enst00000290597 | sg00000159423 | aldh4a1-201 | 1 | 18871430 | 18902553 | - | mRNA | protein_coding |
| 419250 | enst00000375341 | sg00000159423 | aldh4a1-202 | 1 | 18871430 | 18902555 | - | mRNA | protein_coding |
| 419419 | enst00000432718 | sg00000159423 | aldh4a1-203 | 1 | 18883111 | 18902724 | - | mRNA | protein_coding |
| 428687 | enst00000355609 | sg00000169991 | iffo2-201 | 1 | 18908291 | 18911992 | - | mRNA | protein_coding |
| -466540 | enst00000641892 | sg00000284653 | al357509.1-201 | 1 | 18015712 | 18045612 | + | lnc_RNA | lncrna |
| 472393 | enst00000416166 | sg00000169991 | iffo2-202 | 1 | 18908340 | 18955698 | - | mRNA | protein_coding |
| 473371 | enst00000455833 | sg00000169991 | iffo2-203 | 1 | 18904280 | 18956676 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc