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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #117 | 1 | 217137129 | 217138574 | 1445 | 3 | 43 | 1.01619e-16 | 8.63762e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000366940 | sg00000196482 | esrrg-207 | 1 | 216503251 | 217137755 | - | mRNA | protein_coding |
| 0 | enst00000493603 | sg00000196482 | esrrg-221 | 1 | 216503254 | 217137754 | - | mRNA | protein_coding |
| -46582 | enst00000488947 | sg00000196482 | esrrg-220 | 1 | 216865061 | 217090547 | - | lnc_RNA | processed_transcript |
| -47323 | enst00000673908 | sg00000196482 | esrrg-225 | 1 | 216503255 | 217089806 | - | mRNA | protein_coding |
| -47484 | enst00000361525 | sg00000196482 | esrrg-204 | 1 | 216503246 | 217089645 | - | mRNA | protein_coding |
| -47493 | enst00000471371 | sg00000196482 | esrrg-215 | 1 | 216862230 | 217089636 | - | lnc_RNA | processed_transcript |
| -47516 | enst00000459825 | sg00000196482 | esrrg-210 | 1 | 216865117 | 217089613 | - | lnc_RNA | processed_transcript |
| -47524 | enst00000359162 | sg00000196482 | esrrg-201 | 1 | 216503254 | 217089605 | - | mRNA | protein_coding |
| -58769 | enst00000477799 | sg00000196482 | esrrg-217 | 1 | 216855042 | 217078360 | - | lnc_RNA | processed_transcript |
| -58841 | enst00000586199 | sg00000196482 | esrrg-223 | 1 | 216567988 | 217078288 | - | mRNA | nonsense_mediated_decay |
| -60198 | enst00000463665 | sg00000196482 | esrrg-212 | 1 | 216505454 | 217076931 | - | mRNA | protein_coding |
| -60240 | enst00000493748 | sg00000196482 | esrrg-222 | 1 | 216506788 | 217076889 | - | mRNA | protein_coding |
| -197456 | enst00000361395 | sg00000196482 | esrrg-203 | 1 | 216503254 | 216939673 | - | mRNA | protein_coding |
| -197456 | enst00000366938 | sg00000196482 | esrrg-206 | 1 | 216503254 | 216939673 | - | mRNA | protein_coding |
| -197459 | enst00000487276 | sg00000196482 | esrrg-219 | 1 | 216505490 | 216939670 | - | mRNA | protein_coding |
| -331762 | enst00000360012 | sg00000196482 | esrrg-202 | 1 | 216503254 | 216805367 | - | mRNA | protein_coding |
| 360190 | enst00000489246 | sg00000092978 | gpatch2-205 | 1 | 217491506 | 217498764 | - | lnc_RNA | processed_transcript |
| -413657 | enst00000391890 | sg00000196482 | esrrg-208 | 1 | 216503246 | 216723472 | - | mRNA | protein_coding |
| -413676 | enst00000366937 | sg00000196482 | esrrg-205 | 1 | 216503254 | 216723453 | - | mRNA | protein_coding |
| -413677 | enst00000459955 | sg00000196482 | esrrg-211 | 1 | 216677312 | 216723452 | - | mRNA | protein_coding |
| -413700 | enst00000469913 | sg00000196482 | esrrg-214 | 1 | 216707420 | 216723429 | - | lnc_RNA | processed_transcript |
| -413700 | enst00000408911 | sg00000196482 | esrrg-209 | 1 | 216503251 | 216723429 | - | mRNA | protein_coding |
| -413704 | enst00000481543 | sg00000196482 | esrrg-218 | 1 | 216677328 | 216723425 | - | mRNA | protein_coding |
| -413713 | enst00000469486 | sg00000196482 | esrrg-213 | 1 | 216677201 | 216723416 | - | mRNA | protein_coding |
| -413797 | enst00000475275 | sg00000196482 | esrrg-216 | 1 | 216519152 | 216723332 | - | mRNA | protein_coding |
| -421876 | enst00000616180 | sg00000196482 | esrrg-224 | 1 | 216503246 | 216715253 | - | mRNA | protein_coding |
| 471805 | enst00000485274 | sg00000092978 | gpatch2-204 | 1 | 217498180 | 217610379 | - | lnc_RNA | processed_transcript |
| 471826 | enst00000470014 | sg00000092978 | gpatch2-203 | 1 | 217492501 | 217610400 | - | lnc_RNA | processed_transcript |
| 492508 | enst00000366934 | sg00000092978 | gpatch2-201 | 1 | 217608184 | 217631082 | - | mRNA | protein_coding |
| 492516 | enst00000366935 | sg00000092978 | gpatch2-202 | 1 | 217426992 | 217631090 | - | mRNA | protein_coding |
| 492750 | enst00000470448 | sg00000162814 | spata17-202 | 1 | 217631324 | 217774424 | + | mRNA | nonsense_mediated_decay |
| 492770 | enst00000366933 | sg00000162814 | spata17-201 | 1 | 217631344 | 217871696 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc