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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #122 | 12 | 132835523 | 132836850 | 1327 | 3 | 40 | 1.27366e-16 | 1.03824e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -23 | enst00000516270 | sg00000252079 | rnu6-327p-201 | 12 | 132835374 | 132835500 | - | snRNA | snrna |
| -6445 | enst00000652603 | sg00000090615 | golga3-208 | 12 | 132816666 | 132829078 | - | mRNA | protein_coding |
| -6654 | enst00000204726 | sg00000090615 | golga3-201 | 12 | 132768914 | 132828869 | - | mRNA | protein_coding |
| -6659 | enst00000450791 | sg00000090615 | golga3-202 | 12 | 132768914 | 132828864 | - | mRNA | protein_coding |
| -6665 | enst00000537317 | sg00000090615 | golga3-205 | 12 | 132822272 | 132828858 | - | lnc_RNA | processed_transcript |
| -6670 | enst00000456883 | sg00000090615 | golga3-203 | 12 | 132774498 | 132828853 | - | mRNA | protein_coding |
| -6683 | enst00000545875 | sg00000090615 | golga3-207 | 12 | 132783868 | 132828840 | - | mRNA | protein_coding |
| -6792 | enst00000534967 | sg00000090615 | golga3-204 | 12 | 132827824 | 132828731 | - | lnc_RNA | processed_transcript |
| -9822 | enst00000488441 | sg00000232888 | rps11p5-201 | 12 | 132825701 | 132826184 | + | pseudogenic_transcript | processed_pseudogene |
| 10952 | enst00000545046 | sg00000072609 | chfr-224 | 12 | 132840352 | 132847802 | - | lnc_RNA | retained_intron |
| 11342 | enst00000541341 | sg00000072609 | chfr-219 | 12 | 132822187 | 132848192 | - | lnc_RNA | retained_intron |
| 12141 | enst00000536843 | sg00000072609 | chfr-213 | 12 | 132840349 | 132848991 | - | lnc_RNA | retained_intron |
| 13110 | enst00000502279 | sg00000072609 | chfr-207 | 12 | 132848155 | 132849960 | - | lnc_RNA | retained_intron |
| 14808 | enst00000544093 | sg00000072609 | chfr-222 | 12 | 132841125 | 132851658 | - | mRNA | nonsense_mediated_decay |
| 16639 | enst00000538235 | sg00000072609 | chfr-216 | 12 | 132841393 | 132853489 | - | lnc_RNA | processed_transcript |
| 17254 | enst00000544268 | sg00000072609 | chfr-223 | 12 | 132840405 | 132854104 | - | lnc_RNA | retained_intron |
| 18205 | enst00000511001 | sg00000072609 | chfr-208 | 12 | 132853637 | 132855055 | - | lnc_RNA | processed_transcript |
| 19715 | enst00000535527 | sg00000072609 | chfr-210 | 12 | 132841373 | 132856565 | - | mRNA | nonsense_mediated_decay |
| 25054 | enst00000535897 | sg00000072609 | chfr-211 | 12 | 132859079 | 132861904 | - | lnc_RNA | retained_intron |
| 31108 | enst00000623177 | sg00000278949 | ac127070.4-201 | 12 | 132865855 | 132867958 | - | unconfirmed_transcript | tec |
| 46167 | enst00000315585 | sg00000072609 | chfr-202 | 12 | 132840910 | 132883017 | - | mRNA | nonsense_mediated_decay |
| 50672 | enst00000537551 | sg00000072609 | chfr-215 | 12 | 132870725 | 132887522 | - | lnc_RNA | processed_transcript |
| 50682 | enst00000540963 | sg00000072609 | chfr-218 | 12 | 132861547 | 132887532 | - | mRNA | protein_coding |
| 50714 | enst00000535181 | sg00000072609 | chfr-209 | 12 | 132871905 | 132887564 | - | lnc_RNA | retained_intron |
| 50722 | enst00000536196 | sg00000072609 | chfr-212 | 12 | 132871973 | 132887572 | - | lnc_RNA | processed_transcript |
| 50748 | enst00000266880 | sg00000072609 | chfr-201 | 12 | 132832357 | 132887598 | - | mRNA | protein_coding |
| 50753 | enst00000443047 | sg00000072609 | chfr-204 | 12 | 132840352 | 132887603 | - | mRNA | protein_coding |
| 50758 | enst00000432561 | sg00000072609 | chfr-203 | 12 | 132840975 | 132887608 | - | mRNA | protein_coding |
| 50773 | enst00000450056 | sg00000072609 | chfr-205 | 12 | 132840352 | 132887623 | - | mRNA | protein_coding |
| 50992 | enst00000424075 | sg00000236617 | ac127070.1-201 | 12 | 132887842 | 132888583 | + | lnc_RNA | lncrna |
| -58831 | enst00000541013 | sg00000090615 | golga3-206 | 12 | 132773260 | 132776692 | - | mRNA | nonsense_mediated_decay |
| 63134 | enst00000536775 | sg00000255703 | ac127070.3-201 | 12 | 132899984 | 132900368 | + | pseudogenic_transcript | processed_pseudogene |
| 68023 | enst00000542714 | sg00000072609 | chfr-221 | 12 | 132869639 | 132904873 | - | mRNA | protein_coding |
| 68044 | enst00000541817 | sg00000072609 | chfr-220 | 12 | 132859185 | 132904894 | - | mRNA | protein_coding |
| 72297 | enst00000540537 | sg00000072609 | chfr-217 | 12 | 132869619 | 132909147 | - | mRNA | protein_coding |
| 72336 | enst00000499045 | sg00000072609 | chfr-206 | 12 | 132877561 | 132909186 | - | lnc_RNA | processed_transcript |
| -73691 | enst00000357997 | sg00000176915 | ankle2-201 | 12 | 132725503 | 132761832 | - | mRNA | protein_coding |
| -73710 | enst00000539605 | sg00000176915 | ankle2-207 | 12 | 132725668 | 132761813 | - | lnc_RNA | retained_intron |
| 74620 | enst00000503695 | sg00000250790 | ac127070.2-201 | 12 | 132911470 | 132914732 | + | lnc_RNA | lncrna |
| -84189 | enst00000545623 | sg00000176915 | ankle2-211 | 12 | 132737043 | 132751334 | - | lnc_RNA | retained_intron |
| -86496 | enst00000546061 | sg00000176915 | ankle2-212 | 12 | 132743239 | 132749027 | - | lnc_RNA | processed_transcript |
| -87503 | enst00000535036 | sg00000176915 | ankle2-204 | 12 | 132735407 | 132748020 | - | mRNA | nonsense_mediated_decay |
| -90367 | enst00000539323 | sg00000256108 | ac135586.1-201 | 12 | 132745156 | 132745729 | + | pseudogenic_transcript | processed_pseudogene |
| -92269 | enst00000538591 | sg00000176915 | ankle2-205 | 12 | 132734968 | 132743254 | - | lnc_RNA | retained_intron |
| -92965 | enst00000439231 | sg00000176915 | ankle2-202 | 12 | 132730233 | 132742558 | - | lnc_RNA | retained_intron |
| -96616 | enst00000505031 | sg00000176915 | ankle2-203 | 12 | 132729723 | 132738907 | - | lnc_RNA | retained_intron |
| -100084 | enst00000542374 | sg00000176915 | ankle2-209 | 12 | 132727286 | 132735439 | - | lnc_RNA | processed_transcript |
| -100400 | enst00000538766 | sg00000176915 | ankle2-206 | 12 | 132727350 | 132735123 | - | mRNA | protein_coding |
| -103313 | enst00000542282 | sg00000176915 | ankle2-208 | 12 | 132726806 | 132732210 | - | mRNA | protein_coding |
| -103423 | enst00000542657 | sg00000176915 | ankle2-210 | 12 | 132727133 | 132732100 | - | mRNA | protein_coding |
| -111466 | enst00000364599 | sg00000201469 | rna5sp379-201 | 12 | 132723945 | 132724057 | - | pseudogenic_transcript | rrna_pseudogene |
| 111765 | enst00000539809 | sg00000196458 | znf605-206 | 12 | 132945716 | 132948615 | - | lnc_RNA | retained_intron |
| 119412 | enst00000412621 | sg00000196458 | znf605-205 | 12 | 132932812 | 132956262 | - | lnc_RNA | retained_intron |
| 119412 | enst00000381215 | sg00000196458 | znf605-203 | 12 | 132944798 | 132956262 | - | lnc_RNA | retained_intron |
| 119441 | enst00000331711 | sg00000196458 | znf605-201 | 12 | 132926672 | 132956291 | - | lnc_RNA | processed_transcript |
| 119454 | enst00000536932 | sg00000072609 | chfr-214 | 12 | 132869724 | 132956304 | - | mRNA | protein_coding |
| 119456 | enst00000360187 | sg00000196458 | znf605-202 | 12 | 132918306 | 132956306 | - | mRNA | protein_coding |
| 119456 | enst00000392321 | sg00000196458 | znf605-204 | 12 | 132921462 | 132956306 | - | mRNA | protein_coding |
| -120770 | enst00000454808 | sg00000247077 | pgam5-202 | 12 | 132714753 | 132721128 | + | mRNA | protein_coding |
| -124441 | enst00000543955 | sg00000247077 | pgam5-204 | 12 | 132711082 | 132721314 | + | mRNA | protein_coding |
| -124681 | enst00000498926 | sg00000247077 | pgam5-203 | 12 | 132710842 | 132722734 | + | mRNA | protein_coding |
| -124704 | enst00000317555 | sg00000247077 | pgam5-201 | 12 | 132710819 | 132719166 | + | mRNA | protein_coding |
| 136040 | enst00000544753 | sg00000256563 | nanognbp2-201 | 12 | 132972338 | 132972890 | - | pseudogenic_transcript | processed_pseudogene |
| -139578 | enst00000454379 | sg00000176894 | pxmp2-203 | 12 | 132695945 | 132701684 | + | mRNA | protein_coding |
| -145209 | enst00000428960 | sg00000176894 | pxmp2-202 | 12 | 132690314 | 132704898 | + | mRNA | protein_coding |
| -145260 | enst00000539093 | sg00000176894 | pxmp2-204 | 12 | 132690263 | 132704900 | + | mRNA | nonsense_mediated_decay |
| -147474 | enst00000537262 | sg00000256632 | ac135586.2-201 | 12 | 132688049 | 132714912 | + | lnc_RNA | lncrna |
| -147881 | enst00000543589 | sg00000176894 | pxmp2-205 | 12 | 132687642 | 132704985 | + | mRNA | protein_coding |
| -147936 | enst00000317479 | sg00000176894 | pxmp2-201 | 12 | 132687587 | 132704985 | + | mRNA | protein_coding |
| -148147 | enst00000672742 | sg00000177084 | pole-223 | 12 | 132623776 | 132687376 | - | mRNA | nonsense_mediated_decay |
| -148158 | enst00000539357 | sg00000177084 | pole-213 | 12 | 132681028 | 132687365 | - | lnc_RNA | retained_intron |
| -148176 | enst00000537064 | sg00000177084 | pole-210 | 12 | 132624263 | 132687347 | - | mRNA | nonsense_mediated_decay |
| -148181 | enst00000320574 | sg00000177084 | pole-201 | 12 | 132623762 | 132687342 | - | mRNA | protein_coding |
| -148195 | enst00000535270 | sg00000177084 | pole-207 | 12 | 132624690 | 132687328 | - | mRNA | protein_coding |
| 149515 | enst00000537956 | sg00000198393 | znf26-203 | 12 | 132986365 | 133006176 | + | lnc_RNA | processed_transcript |
| 149517 | enst00000328654 | sg00000198393 | znf26-201 | 12 | 132986367 | 133027102 | + | mRNA | protein_coding |
| 149568 | enst00000545101 | sg00000198393 | znf26-206 | 12 | 132986418 | 133006190 | + | lnc_RNA | processed_transcript |
| 149593 | enst00000540238 | sg00000198393 | znf26-204 | 12 | 132986443 | 133010216 | + | mRNA | protein_coding |
| 149618 | enst00000544181 | sg00000198393 | znf26-205 | 12 | 132986468 | 133010241 | + | mRNA | protein_coding |
| -154244 | enst00000539618 | sg00000177084 | pole-214 | 12 | 132680531 | 132681279 | - | lnc_RNA | retained_intron |
| 158452 | enst00000516460 | sg00000252269 | rnu4atac12p-201 | 12 | 132995190 | 132995302 | - | snRNA | snrna |
| -159025 | enst00000535934 | sg00000177084 | pole-208 | 12 | 132672627 | 132676498 | - | lnc_RNA | retained_intron |
| -161882 | enst00000539215 | sg00000177084 | pole-212 | 12 | 132672281 | 132673641 | - | lnc_RNA | processed_transcript |
| -162290 | enst00000545015 | sg00000177084 | pole-221 | 12 | 132672544 | 132673233 | - | lnc_RNA | retained_intron |
| 167554 | enst00000534834 | sg00000198393 | znf26-202 | 12 | 133004404 | 133012127 | + | lnc_RNA | retained_intron |
| -170133 | enst00000672002 | sg00000177084 | pole-222 | 12 | 132623776 | 132665390 | - | mRNA | nonsense_mediated_decay |
| -174610 | enst00000536445 | sg00000177084 | pole-209 | 12 | 132649321 | 132660913 | - | lnc_RNA | retained_intron |
| -184116 | enst00000503265 | sg00000177084 | pole-205 | 12 | 132649353 | 132651407 | - | lnc_RNA | processed_transcript |
| -186158 | enst00000540987 | sg00000177084 | pole-215 | 12 | 132648546 | 132649365 | - | lnc_RNA | retained_intron |
| 189702 | enst00000627376 | sg00000198393 | znf26-207 | 12 | 133026552 | 133032952 | + | lnc_RNA | processed_transcript |
| -193265 | enst00000434528 | sg00000177084 | pole-203 | 12 | 132623768 | 132642258 | - | mRNA | nonsense_mediated_decay |
| -196354 | enst00000541213 | sg00000177084 | pole-216 | 12 | 132632448 | 132639169 | - | lnc_RNA | retained_intron |
| 196653 | enst00000546033 | sg00000255807 | ptp4a1p2-201 | 12 | 133033503 | 133033956 | + | pseudogenic_transcript | processed_pseudogene |
| -199498 | enst00000416953 | sg00000177084 | pole-202 | 12 | 132633971 | 132636025 | - | lnc_RNA | retained_intron |
| -199523 | enst00000544870 | sg00000177084 | pole-220 | 12 | 132626267 | 132636000 | - | mRNA | nonsense_mediated_decay |
| -199531 | enst00000441786 | sg00000177084 | pole-204 | 12 | 132626311 | 132635992 | - | mRNA | nonsense_mediated_decay |
| -199538 | enst00000544414 | sg00000177084 | pole-218 | 12 | 132632508 | 132635985 | - | lnc_RNA | retained_intron |
| 200061 | enst00000592296 | sg00000246394 | znf84-dt-202 | 12 | 133030389 | 133036911 | - | lnc_RNA | lncrna |
| 200372 | enst00000443154 | sg00000246394 | znf84-dt-201 | 12 | 133032659 | 133037222 | - | lnc_RNA | lncrna |
| 200442 | enst00000392319 | sg00000198040 | znf84-202 | 12 | 133037292 | 133063298 | + | mRNA | protein_coding |
| 200451 | enst00000543758 | sg00000198040 | znf84-215 | 12 | 133037301 | 133059606 | + | mRNA | protein_coding |
| 200540 | enst00000539354 | sg00000198040 | znf84-208 | 12 | 133037390 | 133059606 | + | mRNA | protein_coding |
| 200544 | enst00000438628 | sg00000198040 | znf84-203 | 12 | 133037394 | 133048818 | + | mRNA | protein_coding |
| 200629 | enst00000540031 | sg00000198040 | znf84-210 | 12 | 133037479 | 133057425 | + | mRNA | protein_coding |
| 200653 | enst00000539098 | sg00000198040 | znf84-207 | 12 | 133037503 | 133048304 | + | lnc_RNA | retained_intron |
| 200675 | enst00000539686 | sg00000198040 | znf84-209 | 12 | 133037525 | 133048356 | + | lnc_RNA | retained_intron |
| 200680 | enst00000536123 | sg00000198040 | znf84-206 | 12 | 133037530 | 133048775 | + | mRNA | protein_coding |
| 200730 | enst00000327668 | sg00000198040 | znf84-201 | 12 | 133037580 | 133063297 | + | mRNA | protein_coding |
| -201355 | enst00000544692 | sg00000177084 | pole-219 | 12 | 132624706 | 132634168 | - | lnc_RNA | retained_intron |
| 202025 | enst00000543310 | sg00000198040 | znf84-214 | 12 | 133038875 | 133048844 | + | mRNA | protein_coding |
| 202038 | enst00000545299 | sg00000198040 | znf84-216 | 12 | 133038888 | 133041485 | + | mRNA | protein_coding |
| -202966 | enst00000534922 | sg00000177084 | pole-206 | 12 | 132624555 | 132632557 | - | lnc_RNA | retained_intron |
| -203107 | enst00000538196 | sg00000177084 | pole-211 | 12 | 132625298 | 132632416 | - | lnc_RNA | processed_transcript |
| 203584 | enst00000542358 | sg00000198040 | znf84-211 | 12 | 133040434 | 133048356 | + | lnc_RNA | retained_intron |
| 204428 | enst00000542874 | sg00000198040 | znf84-212 | 12 | 133041278 | 133057002 | + | mRNA | protein_coding |
| 204428 | enst00000441040 | sg00000198040 | znf84-204 | 12 | 133041278 | 133048831 | + | lnc_RNA | retained_intron |
| 204435 | enst00000535439 | sg00000198040 | znf84-205 | 12 | 133041285 | 133063304 | + | mRNA | protein_coding |
| -209572 | enst00000541627 | sg00000177084 | pole-217 | 12 | 132623753 | 132625951 | - | lnc_RNA | retained_intron |
| 210771 | enst00000543124 | sg00000198040 | znf84-213 | 12 | 133047621 | 133057332 | + | lnc_RNA | retained_intron |
| -212550 | enst00000623606 | sg00000280311 | ac131212.4-201 | 12 | 132621999 | 132622973 | - | unconfirmed_transcript | tec |
| -216706 | enst00000351222 | sg00000187848 | p2rx2-204 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| -216706 | enst00000350048 | sg00000187848 | p2rx2-203 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| -216706 | enst00000352418 | sg00000187848 | p2rx2-205 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| -216706 | enst00000449132 | sg00000187848 | p2rx2-206 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| -216706 | enst00000348800 | sg00000187848 | p2rx2-202 | 12 | 132618817 | 132621979 | + | mRNA | protein_coding |
| -216706 | enst00000542301 | sg00000187848 | p2rx2-207 | 12 | 132618817 | 132622340 | + | mRNA | protein_coding |
| -216706 | enst00000343948 | sg00000187848 | p2rx2-201 | 12 | 132618817 | 132621972 | + | mRNA | protein_coding |
| -216747 | enst00000643471 | sg00000187848 | p2rx2-208 | 12 | 132618776 | 132622388 | + | mRNA | protein_coding |
| -224941 | enst00000376608 | sg00000204583 | lrcol1-201 | 12 | 132603151 | 132610582 | - | mRNA | protein_coding |
| -224980 | enst00000616042 | sg00000204583 | lrcol1-205 | 12 | 132604614 | 132610543 | - | lnc_RNA | retained_intron |
| -225072 | enst00000536100 | sg00000204583 | lrcol1-202 | 12 | 132605814 | 132610451 | - | lnc_RNA | retained_intron |
| -225126 | enst00000544018 | sg00000204583 | lrcol1-203 | 12 | 132603150 | 132610397 | - | mRNA | nonsense_mediated_decay |
| -225149 | enst00000622710 | sg00000204583 | lrcol1-206 | 12 | 132603169 | 132610374 | - | mRNA | nonsense_mediated_decay |
| -229259 | enst00000545517 | sg00000204583 | lrcol1-204 | 12 | 132604015 | 132606264 | - | mRNA | nonsense_mediated_decay |
| 237133 | enst00000624989 | sg00000279466 | ac073911.1-201 | 12 | 133073516 | 133073983 | - | unconfirmed_transcript | tec |
| 241542 | enst00000624401 | sg00000279817 | ac073911.2-201 | 12 | 133077762 | 133078392 | - | unconfirmed_transcript | tec |
| -241825 | enst00000613771 | sg00000277186 | ac131212.1-201 | 12 | 132593031 | 132593698 | - | lnc_RNA | lncrna |
| 242988 | enst00000355557 | sg00000196387 | znf140-202 | 12 | 133079838 | 133107544 | + | mRNA | protein_coding |
| 243624 | enst00000356456 | sg00000196387 | znf140-203 | 12 | 133080474 | 133105626 | + | mRNA | protein_coding |
| 244025 | enst00000412146 | sg00000196387 | znf140-205 | 12 | 133080875 | 133105641 | + | mRNA | protein_coding |
| 244032 | enst00000544426 | sg00000196387 | znf140-210 | 12 | 133080882 | 133107526 | + | mRNA | protein_coding |
| 244066 | enst00000440984 | sg00000196387 | znf140-208 | 12 | 133080916 | 133084206 | + | lnc_RNA | processed_transcript |
| 244082 | enst00000440550 | sg00000196387 | znf140-207 | 12 | 133080932 | 133106866 | + | mRNA | protein_coding |
| 244082 | enst00000319849 | sg00000196387 | znf140-201 | 12 | 133080932 | 133105590 | + | mRNA | protein_coding |
| 244115 | enst00000392041 | sg00000196387 | znf140-204 | 12 | 133080965 | 133105568 | + | mRNA | nonsense_mediated_decay |
| 244161 | enst00000536790 | sg00000196387 | znf140-209 | 12 | 133081011 | 133107428 | + | mRNA | nonsense_mediated_decay |
| 244735 | enst00000429434 | sg00000196387 | znf140-206 | 12 | 133081585 | 133105713 | + | mRNA | protein_coding |
| -253526 | enst00000612332 | sg00000277052 | mir6763-201 | 12 | 132581997 | 132582061 | + | miRNA | mirna |
| -262996 | enst00000537804 | sg00000112787 | fbrsl1-202 | 12 | 132572527 | 132576861 | + | lnc_RNA | processed_transcript |
| -263662 | enst00000542306 | sg00000112787 | fbrsl1-205 | 12 | 132571861 | 132582267 | + | lnc_RNA | retained_intron |
| -264371 | enst00000543453 | sg00000112787 | fbrsl1-207 | 12 | 132571152 | 132572594 | + | lnc_RNA | processed_transcript |
| -270452 | enst00000622917 | sg00000279700 | ac131212.2-201 | 12 | 132565071 | 132566425 | + | unconfirmed_transcript | tec |
| -275370 | enst00000543360 | sg00000112787 | fbrsl1-206 | 12 | 132560153 | 132570039 | + | lnc_RNA | processed_transcript |
| -275476 | enst00000539264 | sg00000112787 | fbrsl1-203 | 12 | 132560047 | 132570104 | + | lnc_RNA | processed_transcript |
| 278842 | enst00000606110 | sg00000271963 | ac026786.2-201 | 12 | 133115692 | 133122340 | + | lnc_RNA | lncrna |
| -284794 | enst00000624087 | sg00000280287 | ac131212.3-201 | 12 | 132550729 | 132554947 | + | unconfirmed_transcript | tec |
| 288629 | enst00000465341 | sg00000240991 | rpl23ap67-201 | 12 | 133125479 | 133125952 | + | pseudogenic_transcript | processed_pseudogene |
| 293423 | enst00000650709 | sg00000214029 | znf891-202 | 12 | 133106830 | 133130273 | - | mRNA | protein_coding |
| 293623 | enst00000537226 | sg00000214029 | znf891-201 | 12 | 133106817 | 133130473 | - | mRNA | protein_coding |
| 293725 | enst00000538918 | sg00000256223 | znf10-207 | 12 | 133130575 | 133151123 | + | mRNA | protein_coding |
| 293738 | enst00000540609 | sg00000256223 | znf10-208 | 12 | 133130588 | 133151135 | + | mRNA | protein_coding |
| 293761 | enst00000536877 | sg00000256223 | znf10-205 | 12 | 133130611 | 133151866 | + | mRNA | protein_coding |
| 293761 | enst00000536704 | sg00000256223 | znf10-204 | 12 | 133130611 | 133151154 | + | lnc_RNA | processed_transcript |
| 293761 | enst00000540927 | sg00000256223 | znf10-209 | 12 | 133130611 | 133151141 | + | lnc_RNA | processed_transcript |
| 293761 | enst00000543271 | sg00000256223 | znf10-210 | 12 | 133130611 | 133144966 | + | lnc_RNA | processed_transcript |
| 293777 | enst00000248211 | sg00000256223 | znf10-201 | 12 | 133130627 | 133159465 | + | mRNA | protein_coding |
| 293777 | enst00000426665 | sg00000256223 | znf10-203 | 12 | 133130627 | 133156968 | + | mRNA | protein_coding |
| 294134 | enst00000540096 | sg00000256825 | ac026786.1-201 | 12 | 133130984 | 133202369 | + | mRNA | protein_coding |
| 307019 | enst00000402932 | sg00000256223 | znf10-202 | 12 | 133143869 | 133156991 | + | mRNA | protein_coding |
| 314137 | enst00000537119 | sg00000256223 | znf10-206 | 12 | 133150987 | 133155949 | + | lnc_RNA | retained_intron |
| -328493 | enst00000542061 | sg00000112787 | fbrsl1-204 | 12 | 132507030 | 132511952 | + | mRNA | protein_coding |
| 344559 | enst00000536435 | sg00000090612 | znf268-205 | 12 | 133181409 | 133214831 | + | mRNA | protein_coding |
| 344559 | enst00000416488 | sg00000090612 | znf268-202 | 12 | 133181409 | 133193537 | + | mRNA | protein_coding |
| 344624 | enst00000228289 | sg00000090612 | znf268-201 | 12 | 133181474 | 133205023 | + | mRNA | protein_coding |
| 344645 | enst00000546126 | sg00000090612 | znf268-214 | 12 | 133181495 | 133205114 | + | mRNA | nonsense_mediated_decay |
| 344645 | enst00000541211 | sg00000090612 | znf268-210 | 12 | 133181495 | 133202350 | + | mRNA | protein_coding |
| 344645 | enst00000537973 | sg00000090612 | znf268-207 | 12 | 133181495 | 133188153 | + | lnc_RNA | retained_intron |
| 344653 | enst00000500625 | sg00000090612 | znf268-203 | 12 | 133181503 | 133202219 | + | mRNA | protein_coding |
| 344661 | enst00000542711 | sg00000090612 | znf268-212 | 12 | 133181511 | 133202647 | + | mRNA | protein_coding |
| 344661 | enst00000539248 | sg00000090612 | znf268-208 | 12 | 133181511 | 133202440 | + | mRNA | protein_coding |
| 344664 | enst00000542986 | sg00000090612 | znf268-213 | 12 | 133181514 | 133205173 | + | mRNA | protein_coding |
| 344664 | enst00000536899 | sg00000090612 | znf268-206 | 12 | 133181514 | 133205121 | + | mRNA | protein_coding |
| 344672 | enst00000611984 | sg00000090612 | znf268-219 | 12 | 133181522 | 133193537 | + | mRNA | protein_coding |
| 344678 | enst00000541975 | sg00000090612 | znf268-211 | 12 | 133181528 | 133191608 | + | mRNA | protein_coding |
| 344709 | enst00000541009 | sg00000090612 | znf268-209 | 12 | 133181559 | 133205173 | + | mRNA | protein_coding |
| 344770 | enst00000588312 | sg00000090612 | znf268-216 | 12 | 133181620 | 133202348 | + | mRNA | nonsense_mediated_decay |
| 344770 | enst00000592241 | sg00000090612 | znf268-218 | 12 | 133181620 | 133202348 | + | mRNA | protein_coding |
| -345972 | enst00000650108 | sg00000112787 | fbrsl1-208 | 12 | 132489551 | 132585188 | + | mRNA | protein_coding |
| -345972 | enst00000434748 | sg00000112787 | fbrsl1-201 | 12 | 132489551 | 132585188 | + | mRNA | protein_coding |
| 354605 | enst00000585488 | sg00000090612 | znf268-215 | 12 | 133191455 | 133202169 | + | lnc_RNA | retained_intron |
| 354647 | enst00000591951 | sg00000090612 | znf268-217 | 12 | 133191497 | 133202440 | + | mRNA | protein_coding |
| 354871 | enst00000534953 | sg00000090612 | znf268-204 | 12 | 133191721 | 133202310 | + | lnc_RNA | retained_intron |
| -373281 | enst00000537742 | sg00000256875 | ac079031.2-201 | 12 | 132462242 | 132462856 | + | lnc_RNA | lncrna |
| -378363 | enst00000542627 | sg00000256783 | ac079031.1-201 | 12 | 132457160 | 132460024 | + | lnc_RNA | lncrna |
| 380825 | enst00000544259 | sg00000255919 | ac226150.1-201 | 12 | 133217210 | 133217675 | - | pseudogenic_transcript | processed_pseudogene |
| 390267 | enst00000673940 | sg00000227059 | anhx-203 | 12 | 133218317 | 133227117 | - | mRNA | protein_coding |
| 399027 | enst00000419717 | sg00000227059 | anhx-201 | 12 | 133218312 | 133235877 | - | mRNA | protein_coding |
| 399027 | enst00000545940 | sg00000227059 | anhx-202 | 12 | 133218312 | 133235877 | - | mRNA | protein_coding |
| 401588 | enst00000459076 | sg00000239190 | rnu6-717p-201 | 12 | 133238335 | 133238438 | - | snRNA | snrna |
| 401605 | enst00000459107 | sg00000238443 | ap006310.1-201 | 12 | 133238455 | 133238549 | + | ncRNA | misc_rna |
| -410315 | enst00000622182 | sg00000274373 | ac148476.1-201 | 12 | 132424504 | 132425208 | - | lnc_RNA | lncrna |
| -472713 | enst00000623974 | sg00000280150 | ac148477.9-201 | 12 | 132362810 | 132363348 | + | unconfirmed_transcript | tec |
| -474789 | enst00000623746 | sg00000279023 | ac148477.6-201 | 12 | 132360734 | 132361198 | + | unconfirmed_transcript | tec |
| -483668 | enst00000624298 | sg00000279704 | ac148477.8-201 | 12 | 132351855 | 132352322 | + | unconfirmed_transcript | tec |
| -491046 | enst00000651513 | sg00000286008 | ac148477.10-201 | 12 | 132344477 | 132345352 | + | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc