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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #144 | 21 | 39385121 | 39386159 | 1038 | 3 | 40 | 6.33037e-16 | 4.37191e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000380713 | sg00000182093 | get1-202 | 21 | 39386093 | 39393280 | + | mRNA | protein_coding |
| 1606 | enst00000380708 | sg00000182093 | get1-201 | 21 | 39387765 | 39397889 | + | mRNA | protein_coding |
| 1632 | enst00000466787 | sg00000182093 | get1-206 | 21 | 39387791 | 39397254 | + | mRNA | nonsense_mediated_decay |
| -4634 | enst00000442773 | sg00000182093 | get1-205 | 21 | 39380487 | 39390803 | + | mRNA | protein_coding |
| -4643 | enst00000649822 | sg00000182093 | get1-221 | 21 | 39380478 | 39397888 | + | mRNA | nonsense_mediated_decay |
| -4663 | enst00000398753 | sg00000182093 | get1-203 | 21 | 39380458 | 39397116 | + | mRNA | protein_coding |
| 4670 | enst00000649499 | sg00000182093 | get1-220 | 21 | 39390829 | 39428504 | + | mRNA | nonsense_mediated_decay |
| 4701 | enst00000650208 | sg00000182093 | get1-222 | 21 | 39390860 | 39428326 | + | lnc_RNA | processed_transcript |
| -4707 | enst00000471468 | sg00000182093 | get1-207 | 21 | 39380414 | 39391205 | + | lnc_RNA | retained_intron |
| -4707 | enst00000649224 | sg00000182093 | get1-219 | 21 | 39380414 | 39397485 | + | mRNA | nonsense_mediated_decay |
| -4727 | enst00000487869 | sg00000182093 | get1-211 | 21 | 39380394 | 39392046 | + | lnc_RNA | retained_intron |
| -4749 | enst00000649100 | sg00000182093 | get1-217 | 21 | 39380372 | 39415390 | + | mRNA | nonsense_mediated_decay |
| -4753 | enst00000647911 | sg00000182093 | get1-215 | 21 | 39380368 | 39428481 | + | mRNA | nonsense_mediated_decay |
| -4767 | enst00000623703 | sg00000182093 | get1-213 | 21 | 39380354 | 39414288 | + | mRNA | nonsense_mediated_decay |
| -4772 | enst00000648253 | sg00000285815 | wrb-sh3bgr-202 | 21 | 39380349 | 39515321 | + | mRNA | nonsense_mediated_decay |
| -4789 | enst00000647779 | sg00000285815 | wrb-sh3bgr-201 | 21 | 39380332 | 39515506 | + | mRNA | protein_coding |
| -4795 | enst00000649170 | sg00000182093 | get1-218 | 21 | 39380326 | 39397889 | + | mRNA | protein_coding |
| -5550 | enst00000650376 | sg00000182093 | get1-223 | 21 | 39379571 | 39397743 | + | mRNA | protein_coding |
| -5582 | enst00000647678 | sg00000182093 | get1-214 | 21 | 39379539 | 39397887 | + | mRNA | protein_coding |
| 6737 | enst00000490860 | sg00000182093 | get1-212 | 21 | 39392896 | 39397104 | + | lnc_RNA | retained_intron |
| -7423 | enst00000415847 | sg00000182093 | get1-204 | 21 | 39377698 | 39406615 | + | mRNA | protein_coding |
| -8055 | enst00000444889 | sg00000227406 | rnf6p1-201 | 21 | 39373763 | 39377066 | - | pseudogenic_transcript | processed_pseudogene |
| 24710 | enst00000478273 | sg00000182093 | get1-209 | 21 | 39410869 | 39428528 | + | mRNA | protein_coding |
| 24988 | enst00000495240 | sg00000157578 | lca5l-221 | 21 | 39405978 | 39411147 | - | lnc_RNA | processed_transcript |
| 26259 | enst00000648495 | sg00000182093 | get1-216 | 21 | 39412418 | 39428500 | + | lnc_RNA | processed_transcript |
| -35474 | enst00000380747 | sg00000205581 | hmgn1-202 | 21 | 39342879 | 39349647 | - | mRNA | protein_coding |
| -35777 | enst00000492280 | sg00000205581 | hmgn1-220 | 21 | 39342315 | 39349344 | - | lnc_RNA | retained_intron |
| -35981 | enst00000431390 | sg00000205581 | hmgn1-206 | 21 | 39342315 | 39349140 | - | mRNA | nonsense_mediated_decay |
| -36022 | enst00000486741 | sg00000205581 | hmgn1-216 | 21 | 39342315 | 39349099 | - | lnc_RNA | retained_intron |
| -36033 | enst00000436324 | sg00000205581 | hmgn1-207 | 21 | 39342646 | 39349088 | - | mRNA | nonsense_mediated_decay |
| -36033 | enst00000380749 | sg00000205581 | hmgn1-204 | 21 | 39342315 | 39349088 | - | mRNA | protein_coding |
| -36054 | enst00000491183 | sg00000205581 | hmgn1-219 | 21 | 39347147 | 39349067 | - | lnc_RNA | processed_transcript |
| -36067 | enst00000464078 | sg00000205581 | hmgn1-210 | 21 | 39343137 | 39349054 | - | lnc_RNA | retained_intron |
| -36067 | enst00000443046 | sg00000205581 | hmgn1-208 | 21 | 39343009 | 39349054 | - | mRNA | nonsense_mediated_decay |
| -36067 | enst00000463631 | sg00000205581 | hmgn1-209 | 21 | 39348065 | 39349054 | - | lnc_RNA | retained_intron |
| -36068 | enst00000380748 | sg00000205581 | hmgn1-203 | 21 | 39342692 | 39349053 | - | mRNA | protein_coding |
| -36081 | enst00000419378 | sg00000205581 | hmgn1-205 | 21 | 39342788 | 39349040 | - | mRNA | nonsense_mediated_decay |
| -36101 | enst00000482733 | sg00000205581 | hmgn1-214 | 21 | 39347995 | 39349020 | - | lnc_RNA | retained_intron |
| -36106 | enst00000479586 | sg00000205581 | hmgn1-212 | 21 | 39347336 | 39349015 | - | lnc_RNA | processed_transcript |
| -36110 | enst00000652622 | sg00000205581 | hmgn1-221 | 21 | 39342338 | 39349011 | - | mRNA | nonsense_mediated_decay |
| -36130 | enst00000288344 | sg00000205581 | hmgn1-201 | 21 | 39342315 | 39348991 | - | mRNA | nonsense_mediated_decay |
| -36259 | enst00000489072 | sg00000205581 | hmgn1-217 | 21 | 39342800 | 39348862 | - | lnc_RNA | processed_transcript |
| -36498 | enst00000482192 | sg00000205581 | hmgn1-213 | 21 | 39342804 | 39348623 | - | lnc_RNA | processed_transcript |
| -36501 | enst00000471260 | sg00000205581 | hmgn1-211 | 21 | 39347492 | 39348620 | - | lnc_RNA | processed_transcript |
| -36524 | enst00000485550 | sg00000205581 | hmgn1-215 | 21 | 39342909 | 39348597 | - | lnc_RNA | processed_transcript |
| -36782 | enst00000490032 | sg00000205581 | hmgn1-218 | 21 | 39342978 | 39348339 | - | lnc_RNA | processed_transcript |
| 39712 | enst00000476914 | sg00000182093 | get1-208 | 21 | 39425871 | 39428528 | + | lnc_RNA | processed_transcript |
| 39760 | enst00000480690 | sg00000182093 | get1-210 | 21 | 39425919 | 39428528 | + | lnc_RNA | processed_transcript |
| -40584 | enst00000517106 | sg00000252915 | af064861.1-201 | 21 | 39344537 | 39344628 | + | ncRNA | misc_rna |
| 42363 | enst00000380671 | sg00000157578 | lca5l-203 | 21 | 39405844 | 39428522 | - | mRNA | protein_coding |
| 52777 | enst00000468009 | sg00000157578 | lca5l-215 | 21 | 39428222 | 39438936 | - | lnc_RNA | processed_transcript |
| 59560 | enst00000438404 | sg00000157578 | lca5l-209 | 21 | 39428210 | 39445719 | - | mRNA | protein_coding |
| 59574 | enst00000466954 | sg00000157578 | lca5l-214 | 21 | 39423420 | 39445733 | - | lnc_RNA | processed_transcript |
| 59574 | enst00000358268 | sg00000157578 | lca5l-202 | 21 | 39405860 | 39445733 | - | mRNA | protein_coding |
| 59574 | enst00000411566 | sg00000157578 | lca5l-204 | 21 | 39428215 | 39445733 | - | mRNA | protein_coding |
| 59593 | enst00000451131 | sg00000157578 | lca5l-211 | 21 | 39428462 | 39445752 | - | mRNA | protein_coding |
| 59593 | enst00000484878 | sg00000157578 | lca5l-217 | 21 | 39411718 | 39445752 | - | lnc_RNA | processed_transcript |
| 59594 | enst00000480612 | sg00000157578 | lca5l-216 | 21 | 39443459 | 39445753 | - | lnc_RNA | retained_intron |
| 59601 | enst00000418018 | sg00000157578 | lca5l-206 | 21 | 39423245 | 39445760 | - | mRNA | protein_coding |
| 59602 | enst00000459939 | sg00000157578 | lca5l-213 | 21 | 39422988 | 39445761 | - | lnc_RNA | processed_transcript |
| 59610 | enst00000426783 | sg00000157578 | lca5l-207 | 21 | 39428305 | 39445769 | - | mRNA | protein_coding |
| 59610 | enst00000415863 | sg00000157578 | lca5l-205 | 21 | 39428285 | 39445769 | - | mRNA | protein_coding |
| 59616 | enst00000490184 | sg00000157578 | lca5l-219 | 21 | 39423240 | 39445775 | - | lnc_RNA | processed_transcript |
| 59618 | enst00000288350 | sg00000157578 | lca5l-201 | 21 | 39405844 | 39445777 | - | mRNA | protein_coding |
| 59618 | enst00000485895 | sg00000157578 | lca5l-218 | 21 | 39421560 | 39445777 | - | mRNA | protein_coding |
| 59619 | enst00000448288 | sg00000157578 | lca5l-210 | 21 | 39428172 | 39445778 | - | mRNA | protein_coding |
| 59621 | enst00000456017 | sg00000157578 | lca5l-212 | 21 | 39428402 | 39445780 | - | mRNA | protein_coding |
| 59644 | enst00000434281 | sg00000157578 | lca5l-208 | 21 | 39428208 | 39445803 | - | mRNA | protein_coding |
| 59646 | enst00000491625 | sg00000157578 | lca5l-220 | 21 | 39422412 | 39445805 | - | lnc_RNA | retained_intron |
| 59696 | enst00000380637 | sg00000185437 | sh3bgr-204 | 21 | 39445855 | 39515506 | + | mRNA | protein_coding |
| 59706 | enst00000380634 | sg00000185437 | sh3bgr-203 | 21 | 39445865 | 39515355 | + | mRNA | protein_coding |
| 59716 | enst00000458295 | sg00000185437 | sh3bgr-209 | 21 | 39445875 | 39515270 | + | mRNA | protein_coding |
| 59772 | enst00000440288 | sg00000185437 | sh3bgr-206 | 21 | 39445931 | 39511706 | + | mRNA | protein_coding |
| 59783 | enst00000380631 | sg00000185437 | sh3bgr-202 | 21 | 39445942 | 39515207 | + | mRNA | protein_coding |
| 60851 | enst00000611656 | sg00000275523 | mir6508-201 | 21 | 39447010 | 39447069 | + | miRNA | mirna |
| -63562 | enst00000470108 | sg00000185658 | brwd1-212 | 21 | 39298090 | 39321559 | - | lnc_RNA | processed_transcript |
| 65671 | enst00000333634 | sg00000185437 | sh3bgr-201 | 21 | 39451830 | 39515506 | + | mRNA | protein_coding |
| 65964 | enst00000452550 | sg00000185437 | sh3bgr-208 | 21 | 39452123 | 39515506 | + | mRNA | protein_coding |
| -69414 | enst00000423274 | sg00000238141 | brwd1-as1-201 | 21 | 39315707 | 39323218 | + | lnc_RNA | lncrna |
| -71186 | enst00000603064 | sg00000255568 | brwd1-as2-201 | 21 | 39313935 | 39314962 | + | lnc_RNA | lncrna |
| -71302 | enst00000333229 | sg00000185658 | brwd1-201 | 21 | 39184176 | 39313819 | - | mRNA | protein_coding |
| -71479 | enst00000341322 | sg00000185658 | brwd1-202 | 21 | 39296437 | 39313642 | - | mRNA | protein_coding |
| -71531 | enst00000380800 | sg00000185658 | brwd1-204 | 21 | 39193817 | 39313590 | - | mRNA | protein_coding |
| -71551 | enst00000342449 | sg00000185658 | brwd1-203 | 21 | 39190219 | 39313570 | - | mRNA | protein_coding |
| -71820 | enst00000484090 | sg00000185658 | brwd1-214 | 21 | 39312563 | 39313301 | - | lnc_RNA | retained_intron |
| 76375 | enst00000423596 | sg00000185437 | sh3bgr-205 | 21 | 39462534 | 39511775 | + | mRNA | protein_coding |
| 102168 | enst00000450079 | sg00000235808 | myl6p2-201 | 21 | 39488327 | 39488760 | + | pseudogenic_transcript | processed_pseudogene |
| -104908 | enst00000455867 | sg00000185658 | brwd1-211 | 21 | 39236719 | 39280213 | - | mRNA | protein_coding |
| -104908 | enst00000430093 | sg00000185658 | brwd1-207 | 21 | 39236718 | 39280213 | - | mRNA | nonsense_mediated_decay |
| -104908 | enst00000445245 | sg00000185658 | brwd1-208 | 21 | 39236718 | 39280213 | - | mRNA | nonsense_mediated_decay |
| -104908 | enst00000445668 | sg00000185658 | brwd1-209 | 21 | 39236718 | 39280213 | - | mRNA | nonsense_mediated_decay |
| -104908 | enst00000412604 | sg00000185658 | brwd1-205 | 21 | 39236719 | 39280213 | - | mRNA | nonsense_mediated_decay |
| -104914 | enst00000496759 | sg00000185658 | brwd1-216 | 21 | 39278497 | 39280207 | - | lnc_RNA | retained_intron |
| 105739 | enst00000431743 | sg00000228349 | rps26p4-201 | 21 | 39491544 | 39491898 | - | pseudogenic_transcript | processed_pseudogene |
| 113664 | enst00000447939 | sg00000185437 | sh3bgr-207 | 21 | 39499823 | 39515506 | + | mRNA | protein_coding |
| -120180 | enst00000446924 | sg00000185658 | brwd1-210 | 21 | 39187246 | 39264941 | - | mRNA | nonsense_mediated_decay |
| 139424 | enst00000411867 | sg00000235012 | jcadp1-201 | 21 | 39525583 | 39529855 | + | pseudogenic_transcript | processed_pseudogene |
| -149101 | enst00000438852 | sg00000229623 | mettl21ap1-201 | 21 | 39235386 | 39236020 | - | pseudogenic_transcript | processed_pseudogene |
| -155729 | enst00000424441 | sg00000185658 | brwd1-206 | 21 | 39202366 | 39229392 | - | mRNA | protein_coding |
| -165316 | enst00000435608 | sg00000237373 | brwd1-it1-201 | 21 | 39217093 | 39219805 | - | lnc_RNA | lncrna |
| -166461 | enst00000473813 | sg00000185658 | brwd1-213 | 21 | 39209786 | 39218660 | - | lnc_RNA | retained_intron |
| -168497 | enst00000419324 | sg00000232608 | timm9p2-201 | 21 | 39216624 | 39217506 | + | pseudogenic_transcript | processed_pseudogene |
| 170283 | enst00000380620 | sg00000183778 | b3galt5-203 | 21 | 39556442 | 39673137 | + | mRNA | protein_coding |
| 170325 | enst00000475838 | sg00000183778 | b3galt5-205 | 21 | 39556484 | 39563584 | + | lnc_RNA | processed_transcript |
| -184625 | enst00000491564 | sg00000185658 | brwd1-215 | 21 | 39199419 | 39200496 | - | lnc_RNA | retained_intron |
| -200652 | enst00000608767 | sg00000272991 | af129408.1-201 | 21 | 39184469 | 39184899 | + | lnc_RNA | lncrna |
| -201633 | enst00000380900 | sg00000183527 | psmg1-202 | 21 | 39175590 | 39183488 | - | mRNA | protein_coding |
| -201670 | enst00000331573 | sg00000183527 | psmg1-201 | 21 | 39174769 | 39183451 | - | mRNA | protein_coding |
| -201736 | enst00000431628 | sg00000183527 | psmg1-204 | 21 | 39175590 | 39183385 | - | mRNA | nonsense_mediated_decay |
| -201834 | enst00000411828 | sg00000183527 | psmg1-203 | 21 | 39175588 | 39183287 | - | mRNA | nonsense_mediated_decay |
| -206301 | enst00000481921 | sg00000183527 | psmg1-205 | 21 | 39175458 | 39178820 | - | lnc_RNA | retained_intron |
| -213015 | enst00000437262 | sg00000235701 | pcbp2p1-201 | 21 | 39171130 | 39172106 | - | pseudogenic_transcript | processed_pseudogene |
| -213561 | enst00000616808 | sg00000276873 | af129408.2-201 | 21 | 39171462 | 39171560 | - | ncRNA | misc_rna |
| 226233 | enst00000489821 | sg00000184809 | b3galt5-as1-204 | 21 | 39597189 | 39612392 | - | lnc_RNA | lncrna |
| 226282 | enst00000380612 | sg00000184809 | b3galt5-as1-203 | 21 | 39597147 | 39612441 | - | lnc_RNA | lncrna |
| 226345 | enst00000380604 | sg00000184809 | b3galt5-as1-202 | 21 | 39604471 | 39612504 | - | lnc_RNA | lncrna |
| 226487 | enst00000670883 | sg00000184809 | b3galt5-as1-207 | 21 | 39597147 | 39612646 | - | lnc_RNA | lncrna |
| 226698 | enst00000670049 | sg00000184809 | b3galt5-as1-206 | 21 | 39597203 | 39612857 | - | lnc_RNA | lncrna |
| 226717 | enst00000329618 | sg00000184809 | b3galt5-as1-201 | 21 | 39604134 | 39612876 | - | lnc_RNA | lncrna |
| 226751 | enst00000661806 | sg00000184809 | b3galt5-as1-205 | 21 | 39602843 | 39612910 | - | lnc_RNA | lncrna |
| 226781 | enst00000615480 | sg00000183778 | b3galt5-206 | 21 | 39612940 | 39662888 | + | mRNA | protein_coding |
| 244112 | enst00000416555 | sg00000225330 | af064860.1-201 | 21 | 39630271 | 39726085 | + | lnc_RNA | lncrna |
| -257553 | enst00000467573 | sg00000228861 | rpl23ap12-201 | 21 | 39127568 | 39128040 | + | pseudogenic_transcript | processed_pseudogene |
| 271168 | enst00000380618 | sg00000183778 | b3galt5-202 | 21 | 39657327 | 39662889 | + | mRNA | protein_coding |
| 271618 | enst00000343118 | sg00000183778 | b3galt5-201 | 21 | 39657777 | 39662888 | + | mRNA | protein_coding |
| 271723 | enst00000398714 | sg00000183778 | b3galt5-204 | 21 | 39657882 | 39662888 | + | mRNA | protein_coding |
| -322227 | enst00000652155 | sg00000235888 | af064858.1-204 | 21 | 38998651 | 39062894 | - | lnc_RNA | lncrna |
| 341596 | enst00000457325 | sg00000231713 | af064860.2-201 | 21 | 39727755 | 39730680 | + | lnc_RNA | lncrna |
| 341687 | enst00000419826 | sg00000231713 | af064860.2-202 | 21 | 39727846 | 39729684 | + | lnc_RNA | lncrna |
| -355993 | enst00000440714 | sg00000237609 | af064858.2-201 | 21 | 39028536 | 39029128 | - | lnc_RNA | lncrna |
| 359248 | enst00000380588 | sg00000183067 | igsf5-201 | 21 | 39745407 | 39802096 | + | mRNA | protein_coding |
| -361286 | enst00000671754 | sg00000288266 | af064858.3-201 | 21 | 39023000 | 39023835 | - | unconfirmed_transcript | tec |
| 365013 | enst00000479378 | sg00000183067 | igsf5-203 | 21 | 39751172 | 39788188 | + | lnc_RNA | processed_transcript |
| -373792 | enst00000419664 | sg00000235888 | af064858.1-206 | 21 | 39006648 | 39011329 | - | lnc_RNA | lncrna |
| -377987 | enst00000666868 | sg00000235888 | af064858.1-205 | 21 | 39005897 | 39007134 | - | lnc_RNA | lncrna |
| -378268 | enst00000655642 | sg00000235888 | af064858.1-201 | 21 | 38988569 | 39006853 | - | lnc_RNA | lncrna |
| -378559 | enst00000417335 | sg00000235888 | af064858.1-202 | 21 | 38988575 | 39006562 | - | lnc_RNA | lncrna |
| -379299 | enst00000663162 | sg00000235888 | af064858.1-203 | 21 | 38988694 | 39005822 | - | lnc_RNA | lncrna |
| 405471 | enst00000459922 | sg00000183067 | igsf5-202 | 21 | 39791630 | 39801435 | + | lnc_RNA | retained_intron |
| -407347 | enst00000433952 | sg00000232837 | linc01700-201 | 21 | 38974429 | 38977774 | - | lnc_RNA | lncrna |
| -428654 | enst00000415824 | sg00000205622 | ap001042.1-203 | 21 | 38880307 | 38956467 | - | lnc_RNA | lncrna |
| -446692 | enst00000380931 | sg00000205622 | ap001042.1-202 | 21 | 38876087 | 38938429 | - | lnc_RNA | lncrna |
| -458816 | enst00000671617 | sg00000205622 | ap001042.1-218 | 21 | 38912737 | 38926305 | - | lnc_RNA | lncrna |
| -458837 | enst00000660602 | sg00000205622 | ap001042.1-209 | 21 | 38919061 | 38926284 | - | lnc_RNA | lncrna |
| -458844 | enst00000613045 | sg00000205622 | ap001042.1-206 | 21 | 38913313 | 38926277 | - | lnc_RNA | lncrna |
| -458941 | enst00000623098 | sg00000205622 | ap001042.1-205 | 21 | 38913187 | 38926180 | - | lnc_RNA | lncrna |
| -461444 | enst00000615324 | sg00000205622 | ap001042.1-207 | 21 | 38918936 | 38923677 | - | lnc_RNA | lncrna |
| -461483 | enst00000669345 | sg00000205622 | ap001042.1-223 | 21 | 38879691 | 38923638 | - | lnc_RNA | lncrna |
| -469973 | enst00000440379 | sg00000205622 | ap001042.1-204 | 21 | 38912738 | 38915148 | - | lnc_RNA | lncrna |
| -472200 | enst00000626259 | sg00000205622 | ap001042.1-201 | 21 | 38863676 | 38912921 | - | lnc_RNA | lncrna |
| -479662 | enst00000654496 | sg00000205622 | ap001042.1-213 | 21 | 38877774 | 38905459 | - | lnc_RNA | lncrna |
| -479663 | enst00000671381 | sg00000205622 | ap001042.1-220 | 21 | 38879103 | 38905458 | - | lnc_RNA | lncrna |
| -479663 | enst00000653449 | sg00000205622 | ap001042.1-214 | 21 | 38879326 | 38905458 | - | lnc_RNA | lncrna |
| -479669 | enst00000660489 | sg00000205622 | ap001042.1-221 | 21 | 38879693 | 38905452 | - | lnc_RNA | lncrna |
| -479669 | enst00000658721 | sg00000205622 | ap001042.1-216 | 21 | 38879649 | 38905452 | - | lnc_RNA | lncrna |
| -479669 | enst00000657019 | sg00000205622 | ap001042.1-212 | 21 | 38876088 | 38905452 | - | lnc_RNA | lncrna |
| -479669 | enst00000664415 | sg00000205622 | ap001042.1-217 | 21 | 38871144 | 38905452 | - | lnc_RNA | lncrna |
| -479670 | enst00000665758 | sg00000205622 | ap001042.1-208 | 21 | 38879691 | 38905451 | - | lnc_RNA | lncrna |
| -479698 | enst00000663561 | sg00000205622 | ap001042.1-211 | 21 | 38812878 | 38905423 | - | lnc_RNA | lncrna |
| -479698 | enst00000659831 | sg00000205622 | ap001042.1-210 | 21 | 38879155 | 38905423 | - | lnc_RNA | lncrna |
| -479698 | enst00000661563 | sg00000205622 | ap001042.1-215 | 21 | 38871144 | 38905423 | - | lnc_RNA | lncrna |
| -479722 | enst00000670092 | sg00000205622 | ap001042.1-219 | 21 | 38871244 | 38905399 | - | lnc_RNA | lncrna |
| -481081 | enst00000657276 | sg00000205622 | ap001042.1-222 | 21 | 38879310 | 38904040 | - | lnc_RNA | lncrna |
| 481279 | enst00000328619 | sg00000183036 | pcp4-201 | 21 | 39867438 | 39929392 | + | mRNA | protein_coding |
| 481280 | enst00000462224 | sg00000183036 | pcp4-202 | 21 | 39867439 | 39929397 | + | mRNA | nonsense_mediated_decay |
| 481292 | enst00000468717 | sg00000183036 | pcp4-204 | 21 | 39867451 | 39929397 | + | lnc_RNA | processed_transcript |
| -490204 | enst00000451820 | sg00000227721 | rpsap64-201 | 21 | 38894917 | 38895252 | + | pseudogenic_transcript | processed_pseudogene |
| -490336 | enst00000606322 | sg00000272015 | ap001043.2-201 | 21 | 38894785 | 38894867 | + | snoRNA | snorna |
| -496349 | enst00000434589 | sg00000229925 | ap001043.1-201 | 21 | 38888772 | 38903905 | + | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc