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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #176 | 19 | 53554050 | 53555123 | 1073 | 3 | 36 | 1.39972e-14 | 7.90923e-13 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000648511 | sg00000130844 | znf331-225 | 19 | 53554827 | 53580269 | + | mRNA | protein_coding |
| 0 | enst00000513265 | sg00000130844 | znf331-217 | 19 | 53554827 | 53577690 | + | mRNA | protein_coding |
| 0 | enst00000505949 | sg00000130844 | znf331-210 | 19 | 53554827 | 53577092 | + | mRNA | protein_coding |
| 0 | enst00000511567 | sg00000130844 | znf331-214 | 19 | 53554601 | 53576875 | + | mRNA | protein_coding |
| 0 | enst00000512387 | sg00000130844 | znf331-216 | 19 | 53554499 | 53578389 | + | mRNA | protein_coding |
| 117 | enst00000502616 | sg00000130844 | znf331-205 | 19 | 53555240 | 53576817 | + | mRNA | protein_coding |
| 184 | enst00000648397 | sg00000130844 | znf331-224 | 19 | 53555307 | 53580269 | + | mRNA | protein_coding |
| 276 | enst00000504493 | sg00000130844 | znf331-207 | 19 | 53555399 | 53578081 | + | mRNA | protein_coding |
| 364 | enst00000505426 | sg00000130844 | znf331-209 | 19 | 53555487 | 53576753 | + | mRNA | protein_coding |
| -15262 | enst00000513999 | sg00000130844 | znf331-219 | 19 | 53538788 | 53578081 | + | mRNA | protein_coding |
| -15620 | enst00000648122 | sg00000130844 | znf331-222 | 19 | 53538430 | 53580269 | + | mRNA | protein_coding |
| -15727 | enst00000504940 | sg00000130844 | znf331-208 | 19 | 53538323 | 53539357 | + | lnc_RNA | retained_intron |
| -15745 | enst00000509585 | sg00000130844 | znf331-212 | 19 | 53538305 | 53576701 | + | mRNA | protein_coding |
| -15905 | enst00000509069 | sg00000130844 | znf331-211 | 19 | 53538145 | 53539524 | + | lnc_RNA | retained_intron |
| -15907 | enst00000511154 | sg00000130844 | znf331-213 | 19 | 53538143 | 53578386 | + | mRNA | protein_coding |
| -15971 | enst00000411977 | sg00000130844 | znf331-202 | 19 | 53538079 | 53578386 | + | mRNA | protein_coding |
| -16365 | enst00000514374 | sg00000130844 | znf331-220 | 19 | 53537685 | 53576859 | + | mRNA | protein_coding |
| -16797 | enst00000504033 | sg00000130844 | znf331-206 | 19 | 53537253 | 53555852 | + | lnc_RNA | processed_transcript |
| -17727 | enst00000449416 | sg00000130844 | znf331-203 | 19 | 53536323 | 53580269 | + | mRNA | protein_coding |
| -32194 | enst00000511593 | sg00000130844 | znf331-215 | 19 | 53521856 | 53578081 | + | mRNA | protein_coding |
| -32211 | enst00000502248 | sg00000130844 | znf331-204 | 19 | 53521839 | 53576750 | + | mRNA | protein_coding |
| -32217 | enst00000649816 | sg00000130844 | znf331-228 | 19 | 53521833 | 53523515 | + | lnc_RNA | retained_intron |
| -32303 | enst00000649780 | sg00000130844 | znf331-227 | 19 | 53521747 | 53533906 | + | lnc_RNA | processed_transcript |
| -32438 | enst00000650177 | sg00000130844 | znf331-229 | 19 | 53521612 | 53536731 | + | lnc_RNA | processed_transcript |
| -32714 | enst00000649326 | sg00000130844 | znf331-226 | 19 | 53521336 | 53578017 | + | mRNA | protein_coding |
| -33026 | enst00000253144 | sg00000130844 | znf331-201 | 19 | 53521024 | 53580269 | + | mRNA | protein_coding |
| -33067 | enst00000513929 | sg00000130844 | znf331-218 | 19 | 53520983 | 53532972 | + | lnc_RNA | processed_transcript |
| -33102 | enst00000648236 | sg00000130844 | znf331-223 | 19 | 53520948 | 53580202 | + | mRNA | protein_coding |
| -34523 | enst00000647573 | sg00000130844 | znf331-221 | 19 | 53519527 | 53532808 | + | lnc_RNA | processed_transcript |
| -41434 | enst00000616855 | sg00000274892 | ac011487.4-201 | 19 | 53512092 | 53512616 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 48374 | enst00000600193 | sg00000268864 | ac011487.2-201 | 19 | 53599628 | 53603497 | - | lnc_RNA | processed_transcript |
| -50082 | enst00000601966 | sg00000213777 | ac011487.1-203 | 19 | 53503968 | 53512411 | + | lnc_RNA | processed_transcript |
| -50231 | enst00000597004 | sg00000213777 | ac011487.1-202 | 19 | 53503819 | 53512687 | + | lnc_RNA | processed_transcript |
| -50658 | enst00000509280 | sg00000213777 | ac011487.1-201 | 19 | 53503392 | 53504278 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 53328 | enst00000599707 | sg00000268864 | ac011487.2-202 | 19 | 53600319 | 53608451 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -58163 | enst00000483735 | sg00000241434 | ac022137.1-201 | 19 | 53495887 | 53496037 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 61679 | enst00000593607 | sg00000269608 | ac011487.3-201 | 19 | 53616802 | 53617254 | + | pseudogenic_transcript | processed_pseudogene |
| 74590 | enst00000497408 | sg00000242668 | rn7sl317p-201 | 19 | 53629713 | 53630041 | + | ncRNA | misc_rna |
| -74700 | enst00000391998 | sg00000250731 | tpm3p6-201 | 19 | 53479350 | 53480091 | + | pseudogenic_transcript | processed_pseudogene |
| 76933 | enst00000376650 | sg00000204595 | dprx-201 | 19 | 53632056 | 53637009 | + | mRNA | protein_coding |
| -80114 | enst00000657048 | sg00000287608 | ac022137.4-201 | 19 | 53434661 | 53473936 | - | lnc_RNA | lncrna |
| -86307 | enst00000490956 | sg00000198346 | znf813-203 | 19 | 53467743 | 53490578 | + | mRNA | protein_coding |
| -86315 | enst00000468450 | sg00000198346 | znf813-202 | 19 | 53467735 | 53490766 | + | mRNA | protein_coding |
| -86317 | enst00000396403 | sg00000198346 | znf813-201 | 19 | 53467733 | 53496255 | + | mRNA | protein_coding |
| 98562 | enst00000363523 | sg00000200393 | rnu6-698p-201 | 19 | 53653685 | 53653791 | + | snRNA | snrna |
| 103339 | enst00000603737 | sg00000270347 | ac011453.2-201 | 19 | 53657400 | 53658462 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -104154 | enst00000334095 | sg00000160336 | znf761-201 | 19 | 53449896 | 53458260 | + | mRNA | protein_coding |
| -106813 | enst00000613950 | sg00000160336 | znf761-204 | 19 | 53447237 | 53450354 | + | mRNA | protein_coding |
| -108865 | enst00000454407 | sg00000160336 | znf761-203 | 19 | 53445185 | 53458260 | + | mRNA | protein_coding |
| -109049 | enst00000432094 | sg00000160336 | znf761-202 | 19 | 53445001 | 53458261 | + | mRNA | protein_coding |
| 111556 | enst00000384913 | sg00000207645 | mir512-1-201 | 19 | 53666679 | 53666762 | + | miRNA | mirna |
| -112187 | enst00000492121 | sg00000241015 | tpm3p9-202 | 19 | 53441863 | 53442607 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 114034 | enst00000384912 | sg00000207644 | mir512-2-201 | 19 | 53669157 | 53669254 | + | miRNA | mirna |
| 116845 | enst00000408090 | sg00000221017 | mir1323-201 | 19 | 53671968 | 53672040 | + | miRNA | mirna |
| 119074 | enst00000385134 | sg00000207869 | mir498-201 | 19 | 53674197 | 53674320 | + | miRNA | mirna |
| 120588 | enst00000384867 | sg00000207599 | mir520e-201 | 19 | 53675711 | 53675797 | + | miRNA | mirna |
| -122057 | enst00000610928 | sg00000286261 | ac022137.3-202 | 19 | 53431993 | 53450331 | + | mRNA | protein_coding |
| -122066 | enst00000651864 | sg00000286261 | ac022137.3-201 | 19 | 53431984 | 53461862 | + | mRNA | protein_coding |
| -122066 | enst00000424846 | sg00000241015 | tpm3p9-201 | 19 | 53431984 | 53444670 | + | lnc_RNA | processed_transcript |
| 123880 | enst00000384884 | sg00000207616 | mir515-1-201 | 19 | 53679003 | 53679085 | + | miRNA | mirna |
| 124817 | enst00000385075 | sg00000207810 | mir519e-201 | 19 | 53679940 | 53680023 | + | miRNA | mirna |
| 127036 | enst00000384824 | sg00000283540 | mir520f-201 | 19 | 53682159 | 53682245 | + | miRNA | mirna |
| -127551 | enst00000503482 | sg00000249435 | ac022137.2-201 | 19 | 53426019 | 53426499 | - | pseudogenic_transcript | processed_pseudogene |
| 129886 | enst00000384883 | sg00000207615 | mir515-2-201 | 19 | 53685009 | 53685091 | + | miRNA | mirna |
| -130675 | enst00000596086 | sg00000196417 | znf765-208 | 19 | 53423375 | 53427155 | + | lnc_RNA | processed_transcript |
| -130730 | enst00000594627 | sg00000196417 | znf765-207 | 19 | 53423320 | 53426888 | + | lnc_RNA | processed_transcript |
| 131346 | enst00000385053 | sg00000207788 | mir519c-201 | 19 | 53686469 | 53686555 | + | miRNA | mirna |
| 133358 | enst00000408494 | sg00000221421 | mir1283-1-201 | 19 | 53688481 | 53688567 | + | miRNA | mirna |
| 135758 | enst00000384862 | sg00000207594 | mir520a-201 | 19 | 53690881 | 53690965 | + | miRNA | mirna |
| 139270 | enst00000384848 | sg00000207580 | mir526b-201 | 19 | 53694393 | 53694475 | + | miRNA | mirna |
| 140090 | enst00000385090 | sg00000207825 | mir519b-201 | 19 | 53695213 | 53695293 | + | miRNA | mirna |
| -140860 | enst00000490784 | sg00000239912 | rpl39p36-201 | 19 | 53413190 | 53413345 | + | pseudogenic_transcript | processed_pseudogene |
| 142410 | enst00000384978 | sg00000207711 | mir525-201 | 19 | 53697533 | 53697617 | + | miRNA | mirna |
| 143262 | enst00000385281 | sg00000283455 | mir523-201 | 19 | 53698385 | 53698471 | + | miRNA | mirna |
| 144892 | enst00000384973 | sg00000207706 | mir518f-201 | 19 | 53700015 | 53700101 | + | miRNA | mirna |
| 146104 | enst00000384989 | sg00000207722 | mir520b-201 | 19 | 53701227 | 53701287 | + | miRNA | mirna |
| 147614 | enst00000385127 | sg00000207862 | mir518b-201 | 19 | 53702737 | 53702819 | + | miRNA | mirna |
| 151129 | enst00000384897 | sg00000207629 | mir526a1-201 | 19 | 53706252 | 53706336 | + | miRNA | mirna |
| 152330 | enst00000385005 | sg00000207738 | mir520c-201 | 19 | 53707453 | 53707539 | + | miRNA | mirna |
| 153612 | enst00000384822 | sg00000283490 | mir518c-201 | 19 | 53708735 | 53708835 | + | miRNA | mirna |
| 155879 | enst00000385242 | sg00000283289 | mir524-201 | 19 | 53711002 | 53711088 | + | miRNA | mirna |
| 157145 | enst00000385001 | sg00000207734 | mir517a-201 | 19 | 53712268 | 53712354 | + | miRNA | mirna |
| 158224 | enst00000385246 | sg00000207981 | mir519d-201 | 19 | 53713347 | 53713434 | + | miRNA | mirna |
| -158877 | enst00000594030 | sg00000196417 | znf765-206 | 19 | 53395173 | 53430413 | + | mRNA | protein_coding |
| -158889 | enst00000505866 | sg00000196417 | znf765-204 | 19 | 53395161 | 53408098 | + | mRNA | protein_coding |
| -158895 | enst00000507045 | sg00000196417 | znf765-205 | 19 | 53395155 | 53425568 | + | mRNA | nonsense_mediated_decay |
| -158901 | enst00000396408 | sg00000196417 | znf765-201 | 19 | 53395149 | 53412009 | + | mRNA | protein_coding |
| -158906 | enst00000504235 | sg00000196417 | znf765-203 | 19 | 53395144 | 53427321 | + | mRNA | nonsense_mediated_decay |
| 161471 | enst00000384818 | sg00000207549 | mir521-2-201 | 19 | 53716594 | 53716680 | + | miRNA | mirna |
| 164042 | enst00000516034 | sg00000251843 | rnu6-803p-201 | 19 | 53719064 | 53719165 | - | snRNA | snrna |
| -164257 | enst00000504146 | sg00000196417 | znf765-202 | 19 | 53389793 | 53423097 | + | lnc_RNA | processed_transcript |
| 164973 | enst00000385002 | sg00000207735 | mir520d-201 | 19 | 53720096 | 53720182 | + | miRNA | mirna |
| 165953 | enst00000385102 | sg00000207837 | mir517b-201 | 19 | 53721076 | 53721142 | + | miRNA | mirna |
| 167043 | enst00000385064 | sg00000207799 | mir520g-201 | 19 | 53722166 | 53722255 | + | miRNA | mirna |
| -167817 | enst00000459631 | sg00000241069 | ac125388.1-201 | 19 | 53386233 | 53386388 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| -170127 | enst00000601790 | sg00000203326 | znf525-208 | 19 | 53383923 | 53385231 | + | lnc_RNA | processed_transcript |
| 170319 | enst00000385190 | sg00000207925 | mir516b2-201 | 19 | 53725442 | 53725526 | + | miRNA | mirna |
| 171799 | enst00000390198 | sg00000211532 | mir526a2-201 | 19 | 53726922 | 53726986 | + | miRNA | mirna |
| -174669 | enst00000600148 | sg00000203326 | znf525-207 | 19 | 53379381 | 53381049 | + | lnc_RNA | processed_transcript |
| 174715 | enst00000385252 | sg00000207987 | mir518e-201 | 19 | 53729838 | 53729925 | + | miRNA | mirna |
| 175883 | enst00000385068 | sg00000207803 | mir518a1-201 | 19 | 53731006 | 53731090 | + | miRNA | mirna |
| 177960 | enst00000516925 | sg00000252734 | rnu6-980p-201 | 19 | 53732981 | 53733083 | - | snRNA | snrna |
| 179754 | enst00000385014 | sg00000283330 | mir518d-201 | 19 | 53734877 | 53734963 | + | miRNA | mirna |
| 181722 | enst00000385211 | sg00000207946 | mir516b1-201 | 19 | 53736845 | 53736934 | + | miRNA | mirna |
| 184210 | enst00000384966 | sg00000207699 | mir518a2-201 | 19 | 53739333 | 53739419 | + | miRNA | mirna |
| 186190 | enst00000385103 | sg00000207838 | mir517c-201 | 19 | 53741313 | 53741407 | + | miRNA | mirna |
| 187389 | enst00000385126 | sg00000207861 | mir520h-201 | 19 | 53742512 | 53742599 | + | miRNA | mirna |
| -188321 | enst00000593918 | sg00000203326 | znf525-206 | 19 | 53365729 | 53392217 | + | mRNA | protein_coding |
| -188337 | enst00000475179 | sg00000203326 | znf525-203 | 19 | 53365713 | 53386581 | + | mRNA | protein_coding |
| -188343 | enst00000467003 | sg00000203326 | znf525-201 | 19 | 53365707 | 53386593 | + | mRNA | protein_coding |
| -188345 | enst00000474037 | sg00000203326 | znf525-202 | 19 | 53365705 | 53386590 | + | mRNA | protein_coding |
| -188346 | enst00000491101 | sg00000203326 | znf525-204 | 19 | 53365704 | 53376442 | + | mRNA | protein_coding |
| -188357 | enst00000497729 | sg00000203326 | znf525-205 | 19 | 53365693 | 53376157 | + | lnc_RNA | retained_intron |
| 189982 | enst00000516216 | sg00000252025 | rnu6-982p-201 | 19 | 53745004 | 53745105 | - | snRNA | snrna |
| 193513 | enst00000384902 | sg00000207634 | mir521-1-201 | 19 | 53748636 | 53748722 | + | miRNA | mirna |
| 194828 | enst00000516382 | sg00000252191 | rnu6-751p-201 | 19 | 53749851 | 53749951 | - | snRNA | snrna |
| 196088 | enst00000385071 | sg00000283685 | mir522-201 | 19 | 53751211 | 53751297 | + | miRNA | mirna |
| 197274 | enst00000385257 | sg00000207992 | mir519a1-201 | 19 | 53752397 | 53752481 | + | miRNA | mirna |
| 198895 | enst00000385244 | sg00000207979 | mir527-201 | 19 | 53754018 | 53754102 | + | miRNA | mirna |
| 201618 | enst00000385033 | sg00000207767 | mir516a1-201 | 19 | 53756741 | 53756830 | + | miRNA | mirna |
| 203109 | enst00000408621 | sg00000221548 | mir1283-2-201 | 19 | 53758232 | 53758318 | + | miRNA | mirna |
| 205065 | enst00000516254 | sg00000252063 | rnu6-1041p-201 | 19 | 53760087 | 53760188 | - | snRNA | snrna |
| 206010 | enst00000384888 | sg00000207620 | mir516a2-201 | 19 | 53761133 | 53761222 | + | miRNA | mirna |
| 206838 | enst00000597619 | sg00000269842 | ac011453.1-201 | 19 | 53761961 | 53764199 | + | lnc_RNA | lncrna |
| 207221 | enst00000384990 | sg00000284362 | mir519a2-201 | 19 | 53762344 | 53762430 | + | miRNA | mirna |
| 211509 | enst00000517170 | sg00000252979 | rnu6-165p-201 | 19 | 53766534 | 53766632 | - | snRNA | snrna |
| 213430 | enst00000441744 | sg00000237589 | hmgn1p32-201 | 19 | 53767971 | 53768553 | - | pseudogenic_transcript | processed_pseudogene |
| 218157 | enst00000413308 | sg00000229000 | septin7p8-201 | 19 | 53772506 | 53773280 | - | pseudogenic_transcript | processed_pseudogene |
| -220301 | enst00000595091 | sg00000213799 | znf845-202 | 19 | 53333749 | 53354869 | + | mRNA | protein_coding |
| -220301 | enst00000458035 | sg00000213799 | znf845-201 | 19 | 53333749 | 53356906 | + | mRNA | protein_coding |
| 220476 | enst00000423096 | sg00000238150 | ac008753.1-201 | 19 | 53775599 | 53775882 | + | pseudogenic_transcript | processed_pseudogene |
| 232552 | enst00000362161 | sg00000199031 | mir371a-201 | 19 | 53787675 | 53787741 | + | miRNA | mirna |
| 232619 | enst00000638082 | sg00000284568 | mir371b-201 | 19 | 53787677 | 53787742 | - | miRNA | mirna |
| 232767 | enst00000362225 | sg00000199095 | mir372-201 | 19 | 53787890 | 53787956 | + | miRNA | mirna |
| 233046 | enst00000595160 | sg00000269877 | ac008753.3-201 | 19 | 53787597 | 53788169 | - | lnc_RNA | lncrna |
| 233582 | enst00000362273 | sg00000199143 | mir373-201 | 19 | 53788705 | 53788773 | + | miRNA | mirna |
| 233659 | enst00000597420 | sg00000269564 | ac008753.2-201 | 19 | 53788782 | 53789168 | + | lnc_RNA | lncrna |
| -238913 | enst00000458417 | sg00000174677 | vn1r6p-201 | 19 | 53315137 | 53316043 | + | pseudogenic_transcript | unitary_pseudogene |
| -245406 | enst00000596881 | sg00000269118 | fam90a28p-201 | 19 | 53302122 | 53308644 | - | lnc_RNA | processed_transcript |
| -251924 | enst00000597191 | sg00000269118 | fam90a28p-202 | 19 | 53299051 | 53302126 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 253582 | enst00000492915 | sg00000142405 | nlrp12-206 | 19 | 53793743 | 53808705 | - | lnc_RNA | retained_intron |
| -262624 | enst00000651384 | sg00000163098 | birc8-201 | 19 | 53289601 | 53291426 | - | lnc_RNA | processed_transcript |
| -262919 | enst00000652230 | sg00000163098 | birc8-202 | 19 | 53289664 | 53291131 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| 269194 | enst00000391775 | sg00000142405 | nlrp12-205 | 19 | 53793742 | 53824317 | - | mRNA | protein_coding |
| 269220 | enst00000324134 | sg00000142405 | nlrp12-201 | 19 | 53793603 | 53824343 | - | mRNA | protein_coding |
| 269271 | enst00000345770 | sg00000142405 | nlrp12-202 | 19 | 53793743 | 53824394 | - | mRNA | protein_coding |
| 269271 | enst00000391772 | sg00000142405 | nlrp12-203 | 19 | 53793743 | 53824394 | - | mRNA | protein_coding |
| 269271 | enst00000391773 | sg00000142405 | nlrp12-204 | 19 | 53793743 | 53824394 | - | mRNA | protein_coding |
| -271760 | enst00000599085 | sg00000189348 | fam90a27p-202 | 19 | 53282290 | 53284349 | + | lnc_RNA | processed_transcript |
| -272491 | enst00000593323 | sg00000189348 | fam90a27p-201 | 19 | 53281559 | 53284944 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -283118 | enst00000599803 | sg00000269758 | ac092070.4-201 | 19 | 53267870 | 53270932 | - | lnc_RNA | lncrna |
| -286327 | enst00000311170 | sg00000228567 | vn1r4-201 | 19 | 53266676 | 53267723 | - | mRNA | protein_coding |
| -294840 | enst00000598458 | sg00000196131 | vn1r2-202 | 19 | 53259210 | 53261837 | + | lnc_RNA | processed_transcript |
| -295758 | enst00000341702 | sg00000196131 | vn1r2-201 | 19 | 53258292 | 53259602 | + | mRNA | protein_coding |
| -299152 | enst00000595293 | sg00000197928 | znf677-205 | 19 | 53249122 | 53254898 | - | lnc_RNA | processed_transcript |
| -299171 | enst00000598806 | sg00000197928 | znf677-207 | 19 | 53242081 | 53254879 | - | mRNA | protein_coding |
| -299190 | enst00000599012 | sg00000197928 | znf677-208 | 19 | 53241392 | 53254860 | - | mRNA | protein_coding |
| -299192 | enst00000598513 | sg00000197928 | znf677-206 | 19 | 53235381 | 53254858 | - | mRNA | protein_coding |
| -299204 | enst00000601828 | sg00000197928 | znf677-211 | 19 | 53243333 | 53254846 | - | mRNA | protein_coding |
| -299219 | enst00000594681 | sg00000197928 | znf677-204 | 19 | 53241924 | 53254831 | - | mRNA | protein_coding |
| -299229 | enst00000601413 | sg00000197928 | znf677-210 | 19 | 53243556 | 53254821 | - | mRNA | protein_coding |
| -299362 | enst00000594517 | sg00000197928 | znf677-203 | 19 | 53238290 | 53254688 | - | mRNA | protein_coding |
| -302420 | enst00000333952 | sg00000197928 | znf677-201 | 19 | 53235385 | 53251630 | - | mRNA | protein_coding |
| 309640 | enst00000422045 | sg00000179820 | myadm-208 | 19 | 53864763 | 53866140 | + | lnc_RNA | processed_transcript |
| -310039 | enst00000593539 | sg00000197928 | znf677-202 | 19 | 53242211 | 53244011 | - | lnc_RNA | retained_intron |
| 310461 | enst00000336967 | sg00000179820 | myadm-201 | 19 | 53865584 | 53874140 | + | mRNA | protein_coding |
| 311030 | enst00000421337 | sg00000179820 | myadm-207 | 19 | 53866153 | 53874756 | + | mRNA | protein_coding |
| 311035 | enst00000651087 | sg00000179820 | myadm-211 | 19 | 53866158 | 53873896 | + | mRNA | protein_coding |
| -312247 | enst00000599328 | sg00000197928 | znf677-209 | 19 | 53238597 | 53241803 | - | lnc_RNA | retained_intron |
| 312760 | enst00000448420 | sg00000179820 | myadm-210 | 19 | 53867883 | 53874094 | + | mRNA | protein_coding |
| 312760 | enst00000439000 | sg00000179820 | myadm-209 | 19 | 53867883 | 53874307 | + | mRNA | protein_coding |
| 312760 | enst00000391771 | sg00000179820 | myadm-205 | 19 | 53867883 | 53876428 | + | mRNA | protein_coding |
| 312760 | enst00000391770 | sg00000179820 | myadm-204 | 19 | 53867883 | 53876435 | + | mRNA | protein_coding |
| -313375 | enst00000596041 | sg00000269288 | ac092070.3-201 | 19 | 53240675 | 53241913 | + | lnc_RNA | lncrna |
| 313984 | enst00000455835 | sg00000228323 | myadm-as1-201 | 19 | 53854581 | 53869107 | - | lnc_RNA | lncrna |
| 314283 | enst00000391769 | sg00000179820 | myadm-203 | 19 | 53869406 | 53876435 | + | mRNA | protein_coding |
| 314316 | enst00000391768 | sg00000179820 | myadm-202 | 19 | 53869439 | 53874619 | + | mRNA | protein_coding |
| 314642 | enst00000414489 | sg00000179820 | myadm-206 | 19 | 53869765 | 53873969 | + | mRNA | protein_coding |
| 320926 | enst00000413496 | sg00000232220 | ac008440.1-201 | 19 | 53874626 | 53876049 | - | lnc_RNA | lncrna |
| 324067 | enst00000479081 | sg00000126583 | prkcg-204 | 19 | 53879190 | 53889930 | + | mRNA | protein_coding |
| 326661 | enst00000474397 | sg00000126583 | prkcg-203 | 19 | 53881784 | 53891827 | + | mRNA | protein_coding |
| 327074 | enst00000263431 | sg00000126583 | prkcg-201 | 19 | 53882197 | 53907652 | + | mRNA | protein_coding |
| 327106 | enst00000419486 | sg00000126583 | prkcg-202 | 19 | 53882229 | 53889979 | + | mRNA | protein_coding |
| -329171 | enst00000596415 | sg00000267809 | ndufv2p1-201 | 19 | 53223973 | 53224879 | - | pseudogenic_transcript | processed_pseudogene |
| -350034 | enst00000598377 | sg00000269001 | ac092070.2-203 | 19 | 53204016 | 53214522 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 354212 | enst00000391767 | sg00000105605 | cacng7-203 | 19 | 53909335 | 53943941 | + | mRNA | protein_coding |
| 354212 | enst00000468076 | sg00000105605 | cacng7-204 | 19 | 53909335 | 53941593 | + | lnc_RNA | processed_transcript |
| -356864 | enst00000601072 | sg00000269001 | ac092070.2-202 | 19 | 53197186 | 53204055 | + | lnc_RNA | processed_transcript |
| -356939 | enst00000597550 | sg00000269001 | ac092070.2-201 | 19 | 53197111 | 53211015 | + | lnc_RNA | processed_transcript |
| 357614 | enst00000222212 | sg00000105605 | cacng7-201 | 19 | 53912737 | 53942386 | + | mRNA | protein_coding |
| 357694 | enst00000391766 | sg00000105605 | cacng7-202 | 19 | 53912817 | 53941661 | + | mRNA | protein_coding |
| -360664 | enst00000597544 | sg00000197497 | znf665-204 | 19 | 53179568 | 53193386 | - | lnc_RNA | processed_transcript |
| -360676 | enst00000600412 | sg00000197497 | znf665-206 | 19 | 53164138 | 53193374 | - | mRNA | protein_coding |
| -360676 | enst00000650736 | sg00000197497 | znf665-207 | 19 | 53164266 | 53193374 | - | mRNA | protein_coding |
| -360684 | enst00000598440 | sg00000197497 | znf665-205 | 19 | 53180647 | 53193366 | - | lnc_RNA | processed_transcript |
| -360692 | enst00000396424 | sg00000197497 | znf665-201 | 19 | 53162424 | 53193358 | - | mRNA | protein_coding |
| -360723 | enst00000596373 | sg00000197497 | znf665-202 | 19 | 53179697 | 53193327 | - | lnc_RNA | processed_transcript |
| -390151 | enst00000596564 | sg00000197497 | znf665-203 | 19 | 53159213 | 53163899 | - | lnc_RNA | processed_transcript |
| -391622 | enst00000600257 | sg00000268842 | ac092070.1-201 | 19 | 53162428 | 53163563 | + | lnc_RNA | lncrna |
| -394975 | enst00000595710 | sg00000197937 | znf347-203 | 19 | 53148892 | 53159075 | - | lnc_RNA | retained_intron |
| -394990 | enst00000452676 | sg00000197937 | znf347-202 | 19 | 53138705 | 53159060 | - | mRNA | protein_coding |
| -394997 | enst00000601469 | sg00000197937 | znf347-207 | 19 | 53140110 | 53159053 | - | mRNA | protein_coding |
| -394997 | enst00000601804 | sg00000197937 | znf347-208 | 19 | 53124072 | 53159053 | - | mRNA | protein_coding |
| -395003 | enst00000597183 | sg00000197937 | znf347-205 | 19 | 53142278 | 53159047 | - | mRNA | protein_coding |
| -395019 | enst00000334197 | sg00000197937 | znf347-201 | 19 | 53134937 | 53159031 | - | mRNA | protein_coding |
| -395046 | enst00000599096 | sg00000197937 | znf347-206 | 19 | 53149279 | 53159004 | - | mRNA | protein_coding |
| -404515 | enst00000595967 | sg00000197937 | znf347-204 | 19 | 53142414 | 53149535 | - | mRNA | protein_coding |
| 407917 | enst00000270458 | sg00000142408 | cacng8-201 | 19 | 53963040 | 53990215 | + | mRNA | protein_coding |
| 408020 | enst00000638874 | sg00000142408 | cacng8-202 | 19 | 53963143 | 53982849 | + | mRNA | protein_coding |
| -420973 | enst00000595359 | sg00000170954 | znf415-208 | 19 | 53109738 | 53133077 | - | lnc_RNA | processed_transcript |
| -421130 | enst00000594286 | sg00000170954 | znf415-205 | 19 | 53115784 | 53132920 | - | lnc_RNA | processed_transcript |
| -421132 | enst00000421033 | sg00000170954 | znf415-202 | 19 | 53107880 | 53132918 | - | mRNA | protein_coding |
| -421134 | enst00000600098 | sg00000170954 | znf415-219 | 19 | 53116260 | 53132916 | - | lnc_RNA | retained_intron |
| -421146 | enst00000598024 | sg00000170954 | znf415-216 | 19 | 53115235 | 53132904 | - | mRNA | nonsense_mediated_decay |
| -421146 | enst00000602024 | sg00000170954 | znf415-225 | 19 | 53109607 | 53132904 | - | lnc_RNA | processed_transcript |
| -421146 | enst00000601110 | sg00000170954 | znf415-222 | 19 | 53109727 | 53132904 | - | mRNA | protein_coding |
| -421150 | enst00000596051 | sg00000170954 | znf415-210 | 19 | 53116379 | 53132900 | - | mRNA | protein_coding |
| -421150 | enst00000595813 | sg00000170954 | znf415-209 | 19 | 53109806 | 53132900 | - | mRNA | protein_coding |
| -421150 | enst00000602110 | sg00000170954 | znf415-226 | 19 | 53115258 | 53132900 | - | lnc_RNA | processed_transcript |
| -421150 | enst00000596106 | sg00000170954 | znf415-211 | 19 | 53115757 | 53132900 | - | lnc_RNA | processed_transcript |
| -421150 | enst00000600574 | sg00000170954 | znf415-221 | 19 | 53116105 | 53132900 | - | mRNA | protein_coding |
| -421155 | enst00000595193 | sg00000170954 | znf415-207 | 19 | 53107879 | 53132895 | - | mRNA | protein_coding |
| -421158 | enst00000596683 | sg00000170954 | znf415-212 | 19 | 53115734 | 53132892 | - | lnc_RNA | processed_transcript |
| -421158 | enst00000594011 | sg00000170954 | znf415-204 | 19 | 53107880 | 53132892 | - | mRNA | protein_coding |
| -421158 | enst00000243643 | sg00000170954 | znf415-201 | 19 | 53107879 | 53132892 | - | mRNA | protein_coding |
| -421162 | enst00000500065 | sg00000170954 | znf415-203 | 19 | 53107883 | 53132888 | - | mRNA | protein_coding |
| -421164 | enst00000597503 | sg00000170954 | znf415-213 | 19 | 53107879 | 53132886 | - | mRNA | protein_coding |
| -421166 | enst00000599261 | sg00000170954 | znf415-218 | 19 | 53109877 | 53132884 | - | mRNA | protein_coding |
| -421169 | enst00000598578 | sg00000170954 | znf415-217 | 19 | 53108101 | 53132881 | - | mRNA | nonsense_mediated_decay |
| -421175 | enst00000600120 | sg00000170954 | znf415-220 | 19 | 53107879 | 53132875 | - | mRNA | nonsense_mediated_decay |
| -421175 | enst00000601493 | sg00000170954 | znf415-224 | 19 | 53107879 | 53132875 | - | mRNA | protein_coding |
| -424341 | enst00000595174 | sg00000170954 | znf415-206 | 19 | 53109692 | 53129709 | - | mRNA | protein_coding |
| -424351 | enst00000597877 | sg00000170954 | znf415-215 | 19 | 53115847 | 53129699 | - | mRNA | nonsense_mediated_decay |
| -424385 | enst00000601215 | sg00000170954 | znf415-223 | 19 | 53109672 | 53129665 | - | mRNA | protein_coding |
| 427184 | enst00000401179 | sg00000284583 | mir935-201 | 19 | 53982307 | 53982397 | + | miRNA | mirna |
| -430401 | enst00000597748 | sg00000170954 | znf415-214 | 19 | 53107898 | 53123649 | - | mRNA | protein_coding |
| 437165 | enst00000252729 | sg00000130433 | cacng6-201 | 19 | 53992288 | 54012669 | + | mRNA | protein_coding |
| 437165 | enst00000352529 | sg00000130433 | cacng6-203 | 19 | 53992288 | 54012664 | + | mRNA | protein_coding |
| 437755 | enst00000346968 | sg00000130433 | cacng6-202 | 19 | 53992878 | 54012189 | + | mRNA | protein_coding |
| -450614 | enst00000599637 | sg00000170949 | znf160-210 | 19 | 53075159 | 53103436 | - | mRNA | protein_coding |
| -450616 | enst00000429604 | sg00000170949 | znf160-203 | 19 | 53066614 | 53103434 | - | mRNA | protein_coding |
| -450616 | enst00000418871 | sg00000170949 | znf160-202 | 19 | 53066614 | 53103434 | - | mRNA | protein_coding |
| -450627 | enst00000597112 | sg00000170949 | znf160-207 | 19 | 53084954 | 53103423 | - | lnc_RNA | retained_intron |
| -450628 | enst00000600924 | sg00000170949 | znf160-213 | 19 | 53086132 | 53103422 | - | lnc_RNA | retained_intron |
| -450634 | enst00000596966 | sg00000170949 | znf160-206 | 19 | 53085940 | 53103416 | - | lnc_RNA | processed_transcript |
| -450637 | enst00000594760 | sg00000170949 | znf160-204 | 19 | 53086057 | 53103413 | - | lnc_RNA | processed_transcript |
| -450642 | enst00000596388 | sg00000170949 | znf160-205 | 19 | 53095360 | 53103408 | - | lnc_RNA | processed_transcript |
| -450647 | enst00000355147 | sg00000170949 | znf160-201 | 19 | 53072886 | 53103403 | - | mRNA | protein_coding |
| -450657 | enst00000599247 | sg00000170949 | znf160-209 | 19 | 53068866 | 53103393 | - | mRNA | protein_coding |
| -450672 | enst00000602095 | sg00000170949 | znf160-216 | 19 | 53085161 | 53103378 | - | lnc_RNA | processed_transcript |
| -450699 | enst00000599056 | sg00000170949 | znf160-208 | 19 | 53066606 | 53103351 | - | mRNA | protein_coding |
| -450723 | enst00000599980 | sg00000170949 | znf160-212 | 19 | 53091034 | 53103327 | - | lnc_RNA | retained_intron |
| -468655 | enst00000599729 | sg00000170949 | znf160-211 | 19 | 53076913 | 53085395 | - | lnc_RNA | processed_transcript |
| -468666 | enst00000601982 | sg00000170949 | znf160-215 | 19 | 53070073 | 53085384 | - | mRNA | protein_coding |
| 476289 | enst00000619693 | sg00000276206 | ac012314.9-201 | 19 | 54031412 | 54031504 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -478083 | enst00000601421 | sg00000170949 | znf160-214 | 19 | 53066615 | 53075967 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc