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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #177 | 7 | 157500761 | 157501976 | 1215 | 3 | 37 | 1.65355e-14 | 9.23849e-13 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000669906 | sg00000223872 | ac006372.1-202 | 7 | 157501407 | 157503587 | + | lnc_RNA | lncrna |
| 0 | enst00000449903 | sg00000223872 | ac006372.1-201 | 7 | 157501322 | 157503577 | + | lnc_RNA | lncrna |
| 154 | enst00000665840 | sg00000223872 | ac006372.1-203 | 7 | 157502130 | 157503908 | + | lnc_RNA | lncrna |
| 183 | enst00000670480 | sg00000223872 | ac006372.1-205 | 7 | 157502159 | 157503908 | + | lnc_RNA | lncrna |
| 191 | enst00000663105 | sg00000223872 | ac006372.1-204 | 7 | 157502167 | 157503899 | + | lnc_RNA | lncrna |
| 11318 | enst00000433660 | sg00000233191 | ac006372.2-201 | 7 | 157513294 | 157516841 | + | lnc_RNA | lncrna |
| 13817 | enst00000648425 | sg00000233191 | ac006372.2-202 | 7 | 157515793 | 157518658 | + | lnc_RNA | lncrna |
| 23807 | enst00000624122 | sg00000280266 | ac006372.4-201 | 7 | 157525783 | 157527325 | + | unconfirmed_transcript | tec |
| -34530 | enst00000444158 | sg00000234210 | ac006372.3-201 | 7 | 157466231 | 157499716 | + | lnc_RNA | lncrna |
| 72446 | enst00000385225 | sg00000207960 | mir153-2-201 | 7 | 157574336 | 157574422 | - | miRNA | mirna |
| 112047 | enst00000409610 | sg00000222012 | ac005481.1-201 | 7 | 157614023 | 157618765 | + | lnc_RNA | lncrna |
| -118940 | enst00000486247 | sg00000105993 | dnajb6-215 | 7 | 157381821 | 157382743 | + | lnc_RNA | retained_intron |
| 119533 | enst00000648371 | sg00000155093 | ptprn2-206 | 7 | 157540337 | 157621509 | - | mRNA | protein_coding |
| -122636 | enst00000487480 | sg00000105993 | dnajb6-216 | 7 | 157378125 | 157386318 | + | lnc_RNA | retained_intron |
| -131960 | enst00000465908 | sg00000105993 | dnajb6-212 | 7 | 157368801 | 157410001 | + | lnc_RNA | processed_transcript |
| -132153 | enst00000468928 | sg00000105993 | dnajb6-213 | 7 | 157368608 | 157384983 | + | lnc_RNA | retained_intron |
| -142188 | enst00000634080 | sg00000105993 | dnajb6-218 | 7 | 157358573 | 157410108 | + | mRNA | protein_coding |
| -160940 | enst00000439402 | sg00000105993 | dnajb6-206 | 7 | 157339821 | 157363230 | + | mRNA | protein_coding |
| -163218 | enst00000453383 | sg00000105993 | dnajb6-210 | 7 | 157337543 | 157367432 | + | mRNA | protein_coding |
| -163236 | enst00000412557 | sg00000105993 | dnajb6-202 | 7 | 157337525 | 157382275 | + | mRNA | protein_coding |
| -163706 | enst00000437030 | sg00000105993 | dnajb6-205 | 7 | 157337055 | 157366525 | + | mRNA | protein_coding |
| -163715 | enst00000441291 | sg00000105993 | dnajb6-207 | 7 | 157337046 | 157382272 | + | mRNA | nonsense_mediated_decay |
| -163736 | enst00000443280 | sg00000105993 | dnajb6-209 | 7 | 157337025 | 157416475 | + | mRNA | protein_coding |
| -163736 | enst00000488001 | sg00000105993 | dnajb6-217 | 7 | 157337025 | 157368795 | + | lnc_RNA | processed_transcript |
| -163738 | enst00000459889 | sg00000105993 | dnajb6-211 | 7 | 157337023 | 157417433 | + | mRNA | nonsense_mediated_decay |
| -163751 | enst00000417758 | sg00000105993 | dnajb6-203 | 7 | 157337010 | 157385605 | + | mRNA | protein_coding |
| -163757 | enst00000486083 | sg00000105993 | dnajb6-214 | 7 | 157337004 | 157372227 | + | lnc_RNA | processed_transcript |
| -163757 | enst00000262177 | sg00000105993 | dnajb6-201 | 7 | 157337004 | 157417439 | + | mRNA | protein_coding |
| -163795 | enst00000429029 | sg00000105993 | dnajb6-204 | 7 | 157336966 | 157386324 | + | mRNA | protein_coding |
| -165380 | enst00000441561 | sg00000105993 | dnajb6-208 | 7 | 157335381 | 157382336 | + | mRNA | protein_coding |
| -218075 | enst00000442017 | sg00000229660 | ac004975.2-201 | 7 | 157281536 | 157282686 | - | lnc_RNA | lncrna |
| -237532 | enst00000428733 | sg00000224629 | ac004975.1-201 | 7 | 157263022 | 157263229 | - | pseudogenic_transcript | processed_pseudogene |
| 238480 | enst00000448541 | sg00000231515 | ac006003.1-201 | 7 | 157739010 | 157740456 | - | lnc_RNA | lncrna |
| -244074 | enst00000474153 | sg00000009335 | ube3c-206 | 7 | 157256687 | 157267676 | + | lnc_RNA | retained_intron |
| -275259 | enst00000494532 | sg00000009335 | ube3c-207 | 7 | 157225502 | 157248624 | + | lnc_RNA | retained_intron |
| -275261 | enst00000497368 | sg00000009335 | ube3c-208 | 7 | 157225500 | 157231815 | + | lnc_RNA | retained_intron |
| -280093 | enst00000470408 | sg00000009335 | ube3c-205 | 7 | 157220668 | 157269116 | + | lnc_RNA | retained_intron |
| -293248 | enst00000469336 | sg00000009335 | ube3c-204 | 7 | 157207513 | 157217245 | + | lnc_RNA | retained_intron |
| -302250 | enst00000451057 | sg00000236018 | ac004898.1-201 | 7 | 157197600 | 157198511 | - | pseudogenic_transcript | processed_pseudogene |
| -308393 | enst00000429552 | sg00000225224 | rps27ap12-201 | 7 | 157192368 | 157192832 | + | pseudogenic_transcript | processed_pseudogene |
| 352553 | enst00000436151 | sg00000233038 | ac011899.2-201 | 7 | 157854529 | 157857852 | + | lnc_RNA | lncrna |
| 352632 | enst00000434059 | sg00000233038 | ac011899.2-202 | 7 | 157854608 | 157857582 | + | lnc_RNA | lncrna |
| 352824 | enst00000443338 | sg00000233038 | ac011899.2-203 | 7 | 157854800 | 157863011 | + | lnc_RNA | lncrna |
| -361482 | enst00000430750 | sg00000009335 | ube3c-203 | 7 | 157139279 | 157170450 | + | mRNA | nonsense_mediated_decay |
| -361566 | enst00000389103 | sg00000009335 | ube3c-202 | 7 | 157139195 | 157189294 | + | mRNA | protein_coding |
| -361835 | enst00000348165 | sg00000009335 | ube3c-201 | 7 | 157138926 | 157269370 | + | mRNA | protein_coding |
| -361845 | enst00000611269 | sg00000009335 | ube3c-209 | 7 | 157138916 | 157189296 | + | mRNA | protein_coding |
| 366562 | enst00000608596 | sg00000272839 | ac011899.3-201 | 7 | 157868538 | 157869154 | + | lnc_RNA | lncrna |
| -390781 | enst00000594086 | sg00000269446 | ac006967.3-201 | 7 | 157109980 | 157111072 | + | lnc_RNA | lncrna |
| -412218 | enst00000467608 | sg00000229365 | ac006967.1-201 | 7 | 157087955 | 157088543 | - | pseudogenic_transcript | processed_pseudogene |
| -442247 | enst00000426169 | sg00000236102 | ac006967.2-201 | 7 | 157057709 | 157058514 | - | lnc_RNA | lncrna |
| 485193 | enst00000649505 | sg00000285821 | ac011899.4-201 | 7 | 157987169 | 157989456 | + | lnc_RNA | lncrna |
| -489956 | enst00000480284 | sg00000243479 | mnx1-as1-201 | 7 | 157010805 | 157016426 | + | lnc_RNA | lncrna |
| -490098 | enst00000252971 | sg00000130675 | mnx1-201 | 7 | 157004854 | 157010663 | - | mRNA | protein_coding |
| -491064 | enst00000479817 | sg00000130675 | mnx1-206 | 7 | 156994051 | 157009697 | - | mRNA | protein_coding |
| -491326 | enst00000474448 | sg00000130675 | mnx1-205 | 7 | 157005842 | 157009435 | - | mRNA | nonsense_mediated_decay |
| -491326 | enst00000428439 | sg00000130675 | mnx1-203 | 7 | 157005842 | 157009435 | - | mRNA | protein_coding |
| -491326 | enst00000543409 | sg00000130675 | mnx1-207 | 7 | 157004853 | 157009435 | - | mRNA | protein_coding |
| -491470 | enst00000605400 | sg00000130675 | mnx1-208 | 7 | 157007539 | 157009291 | - | lnc_RNA | retained_intron |
| -491474 | enst00000425745 | sg00000130675 | mnx1-202 | 7 | 157005842 | 157009287 | - | mRNA | protein_coding |
| -491686 | enst00000469500 | sg00000130675 | mnx1-204 | 7 | 156994051 | 157009075 | - | mRNA | protein_coding |
| -494454 | enst00000429228 | sg00000235029 | mnx1-as2-201 | 7 | 157006307 | 157007132 | + | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc