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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #180 | 6 | 26188238 | 26189254 | 1016 | 3 | 31 | 1.75556e-14 | 9.69946e-13 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000614247 | sg00000277157 | h4c4-201 | 6 | 26188765 | 26189076 | - | mRNA | protein_coding |
| -4508 | enst00000614097 | sg00000274290 | h2bc6-201 | 6 | 26183730 | 26184226 | + | mRNA | protein_coding |
| 6300 | enst00000404269 | sg00000216331 | h1-12p-201 | 6 | 26195554 | 26196633 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 7996 | enst00000356476 | sg00000197409 | h3c4-201 | 6 | 26196840 | 26197250 | - | mRNA | protein_coding |
| 9989 | enst00000341023 | sg00000196866 | h2ac7-201 | 6 | 26198851 | 26199243 | - | mRNA | protein_coding |
| 10039 | enst00000635200 | sg00000282988 | al031777.2-203 | 6 | 26196754 | 26199293 | - | mRNA | protein_coding |
| 10039 | enst00000635641 | sg00000282988 | al031777.2-201 | 6 | 26195595 | 26199293 | - | mRNA | nonsense_mediated_decay |
| 10039 | enst00000650491 | sg00000282988 | al031777.2-202 | 6 | 26196040 | 26199293 | - | mRNA | protein_coding |
| 10266 | enst00000356530 | sg00000277224 | h2bc7-201 | 6 | 26199520 | 26200715 | + | mRNA | protein_coding |
| 12902 | enst00000405418 | sg00000217275 | al031777.1-201 | 6 | 26202156 | 26202654 | + | pseudogenic_transcript | processed_pseudogene |
| 15298 | enst00000615164 | sg00000276966 | h4c5-201 | 6 | 26204552 | 26206038 | + | mRNA | protein_coding |
| -15436 | enst00000635439 | sg00000283064 | al353759.1-201 | 6 | 26160765 | 26172802 | - | lnc_RNA | lncrna |
| -16179 | enst00000634910 | sg00000274290 | h2bc6-202 | 6 | 26172059 | 26184655 | + | mRNA | protein_coding |
| -24166 | enst00000407692 | sg00000217159 | larp1p1-201 | 6 | 26164072 | 26164363 | + | pseudogenic_transcript | processed_pseudogene |
| 27438 | enst00000541790 | sg00000273802 | h2bc8-201 | 6 | 26215159 | 26216692 | - | mRNA | protein_coding |
| 27721 | enst00000303910 | sg00000277075 | h2ac8-201 | 6 | 26216975 | 26217483 | + | mRNA | protein_coding |
| 29791 | enst00000611953 | sg00000277720 | h3c5p-201 | 6 | 26219045 | 26219240 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -30092 | enst00000289316 | sg00000158373 | h2bc5-201 | 6 | 26158146 | 26171349 | + | mRNA | protein_coding |
| -30092 | enst00000377777 | sg00000158373 | h2bc5-202 | 6 | 26158146 | 26158641 | + | mRNA | protein_coding |
| -31884 | enst00000304218 | sg00000168298 | h1-4-201 | 6 | 26156354 | 26157107 | + | mRNA | protein_coding |
| 34945 | enst00000634733 | sg00000274750 | h3c6-202 | 6 | 26224199 | 26227473 | + | mRNA | protein_coding |
| 35901 | enst00000614911 | sg00000274750 | h3c6-201 | 6 | 26225155 | 26225616 | + | mRNA | protein_coding |
| 43868 | enst00000403259 | sg00000218281 | h2ac9p-201 | 6 | 26233122 | 26233255 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 45679 | enst00000244534 | sg00000124575 | h1-3-201 | 6 | 26234268 | 26234933 | - | mRNA | protein_coding |
| 51172 | enst00000244537 | sg00000274618 | h4c6-201 | 6 | 26240426 | 26240737 | + | mRNA | protein_coding |
| 57723 | enst00000611444 | sg00000275663 | h4c7-201 | 6 | 26246681 | 26246977 | - | mRNA | protein_coding |
| 61351 | enst00000618052 | sg00000277775 | h3c7-201 | 6 | 26250195 | 26250605 | - | mRNA | protein_coding |
| 62397 | enst00000619466 | sg00000275713 | h2bc9-201 | 6 | 26251651 | 26253710 | + | mRNA | protein_coding |
| -64035 | enst00000602637 | sg00000180573 | h2ac6-203 | 6 | 26124203 | 26139084 | + | mRNA | protein_coding |
| -64093 | enst00000314088 | sg00000180573 | h2ac6-201 | 6 | 26124145 | 26139116 | + | mRNA | nonsense_mediated_decay |
| -64093 | enst00000377791 | sg00000180573 | h2ac6-202 | 6 | 26124145 | 26139102 | + | mRNA | protein_coding |
| -64312 | enst00000396984 | sg00000180596 | h2bc4-202 | 6 | 26123356 | 26123926 | - | mRNA | protein_coding |
| -64328 | enst00000314332 | sg00000180596 | h2bc4-201 | 6 | 26114873 | 26123910 | - | mRNA | protein_coding |
| -80102 | enst00000338379 | sg00000187475 | h1-6-201 | 6 | 26107419 | 26108136 | - | mRNA | protein_coding |
| 82561 | enst00000614378 | sg00000273983 | h3c8-201 | 6 | 26269405 | 26271815 | - | mRNA | protein_coding |
| 83286 | enst00000362070 | sg00000218690 | h2ac10p-201 | 6 | 26272193 | 26272540 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 83447 | enst00000635537 | sg00000218690 | h2ac10p-202 | 6 | 26272021 | 26272701 | - | lnc_RNA | processed_transcript |
| 83722 | enst00000377733 | sg00000278588 | h2bc10-201 | 6 | 26272976 | 26273356 | + | mRNA | protein_coding |
| -84362 | enst00000377803 | sg00000197061 | h4c3-201 | 6 | 26103876 | 26104310 | + | mRNA | protein_coding |
| -95290 | enst00000485729 | sg00000010704 | hfe-212 | 6 | 26092948 | 26095020 | + | mRNA | protein_coding |
| 96255 | enst00000377727 | sg00000158406 | h4c8-201 | 6 | 26285113 | 26285509 | - | mRNA | protein_coding |
| 96280 | enst00000635491 | sg00000158406 | h4c8-204 | 6 | 26281055 | 26285534 | - | mRNA | protein_coding |
| 96280 | enst00000634560 | sg00000158406 | h4c8-202 | 6 | 26281055 | 26285534 | - | mRNA | nonsense_mediated_decay |
| 96384 | enst00000634956 | sg00000158406 | h4c8-203 | 6 | 26277609 | 26285638 | - | mRNA | nonsense_mediated_decay |
| -100799 | enst00000309234 | sg00000010704 | hfe-201 | 6 | 26087439 | 26094553 | + | mRNA | protein_coding |
| -100833 | enst00000488199 | sg00000010704 | hfe-214 | 6 | 26087405 | 26094230 | + | mRNA | protein_coding |
| -100833 | enst00000461397 | sg00000010704 | hfe-209 | 6 | 26087405 | 26094230 | + | mRNA | protein_coding |
| -100840 | enst00000486147 | sg00000010704 | hfe-213 | 6 | 26087398 | 26094257 | + | lnc_RNA | retained_intron |
| -100841 | enst00000336625 | sg00000010704 | hfe-203 | 6 | 26087397 | 26094257 | + | mRNA | protein_coding |
| -100846 | enst00000470149 | sg00000010704 | hfe-210 | 6 | 26087392 | 26094262 | + | mRNA | protein_coding |
| -100919 | enst00000357618 | sg00000010704 | hfe-207 | 6 | 26087319 | 26098343 | + | mRNA | protein_coding |
| -100919 | enst00000483782 | sg00000010704 | hfe-211 | 6 | 26087319 | 26092982 | + | lnc_RNA | retained_intron |
| -100957 | enst00000353147 | sg00000010704 | hfe-206 | 6 | 26087281 | 26094368 | + | mRNA | protein_coding |
| -100957 | enst00000397022 | sg00000010704 | hfe-208 | 6 | 26087281 | 26094368 | + | mRNA | protein_coding |
| -100957 | enst00000352392 | sg00000010704 | hfe-205 | 6 | 26087281 | 26094488 | + | mRNA | protein_coding |
| -100957 | enst00000349999 | sg00000010704 | hfe-204 | 6 | 26087281 | 26094987 | + | mRNA | protein_coding |
| -100957 | enst00000317896 | sg00000010704 | hfe-202 | 6 | 26087281 | 26095217 | + | mRNA | protein_coding |
| -131810 | enst00000343677 | sg00000187837 | h1-2-201 | 6 | 26055787 | 26056428 | - | mRNA | protein_coding |
| 133038 | enst00000404612 | sg00000220875 | h3c9p-201 | 6 | 26321876 | 26322292 | - | pseudogenic_transcript | processed_pseudogene |
| 142646 | enst00000655687 | sg00000287050 | al021917.1-201 | 6 | 26324705 | 26331900 | - | lnc_RNA | lncrna |
| -142827 | enst00000612966 | sg00000287080 | h3c3-201 | 6 | 26045411 | 26045869 | + | mRNA | protein_coding |
| -144249 | enst00000454320 | sg00000234816 | h2ac5p-201 | 6 | 26043989 | 26044357 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -144581 | enst00000615966 | sg00000276410 | h2bc3-201 | 6 | 26043277 | 26043657 | - | mRNA | protein_coding |
| -154670 | enst00000615868 | sg00000278463 | h2ac4-201 | 6 | 26033176 | 26033568 | - | mRNA | protein_coding |
| -156139 | enst00000621411 | sg00000286522 | h3c2-201 | 6 | 26031594 | 26032099 | - | mRNA | protein_coding |
| -160986 | enst00000377745 | sg00000278705 | h4c2-201 | 6 | 26026815 | 26027252 | - | mRNA | protein_coding |
| -166559 | enst00000617569 | sg00000278637 | h4c1-201 | 6 | 26021679 | 26021990 | + | mRNA | protein_coding |
| -167748 | enst00000613854 | sg00000275714 | h3c1-201 | 6 | 26020490 | 26020900 | + | mRNA | protein_coding |
| -170506 | enst00000244573 | sg00000124610 | h1-1-201 | 6 | 26017085 | 26017732 | - | mRNA | protein_coding |
| -171859 | enst00000437528 | sg00000224447 | h3p26-201 | 6 | 26016379 | 26016601 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -174997 | enst00000608919 | sg00000272810 | u91328.3-201 | 6 | 26013241 | 26013757 | + | lnc_RNA | lncrna |
| 175905 | enst00000532865 | sg00000186470 | btn3a2-217 | 6 | 26365159 | 26370603 | + | mRNA | protein_coding |
| 175905 | enst00000396934 | sg00000186470 | btn3a2-203 | 6 | 26365159 | 26378320 | + | mRNA | protein_coding |
| 175905 | enst00000508906 | sg00000186470 | btn3a2-205 | 6 | 26365159 | 26378320 | + | mRNA | protein_coding |
| 175916 | enst00000530653 | sg00000186470 | btn3a2-213 | 6 | 26365170 | 26370360 | + | mRNA | protein_coding |
| 175916 | enst00000527417 | sg00000186470 | btn3a2-208 | 6 | 26365170 | 26372942 | + | mRNA | protein_coding |
| 175944 | enst00000377708 | sg00000186470 | btn3a2-202 | 6 | 26365198 | 26378312 | + | mRNA | protein_coding |
| 175950 | enst00000524682 | sg00000186470 | btn3a2-207 | 6 | 26365204 | 26374373 | + | lnc_RNA | processed_transcript |
| 175954 | enst00000528222 | sg00000186470 | btn3a2-211 | 6 | 26365208 | 26368729 | + | lnc_RNA | retained_intron |
| 175974 | enst00000532627 | sg00000186470 | btn3a2-216 | 6 | 26365228 | 26373296 | + | lnc_RNA | processed_transcript |
| 175974 | enst00000524459 | sg00000186470 | btn3a2-206 | 6 | 26365228 | 26368800 | + | mRNA | nonsense_mediated_decay |
| 175977 | enst00000356386 | sg00000186470 | btn3a2-201 | 6 | 26365231 | 26378318 | + | mRNA | protein_coding |
| 175977 | enst00000527422 | sg00000186470 | btn3a2-209 | 6 | 26365231 | 26375737 | + | mRNA | protein_coding |
| 176004 | enst00000528541 | sg00000186470 | btn3a2-212 | 6 | 26365258 | 26368765 | + | lnc_RNA | retained_intron |
| 176012 | enst00000396948 | sg00000186470 | btn3a2-204 | 6 | 26365266 | 26375816 | + | mRNA | protein_coding |
| 176015 | enst00000532994 | sg00000186470 | btn3a2-218 | 6 | 26365269 | 26373087 | + | lnc_RNA | processed_transcript |
| 181171 | enst00000532294 | sg00000186470 | btn3a2-215 | 6 | 26370425 | 26374808 | + | lnc_RNA | retained_intron |
| 181237 | enst00000531055 | sg00000186470 | btn3a2-214 | 6 | 26370491 | 26373606 | + | lnc_RNA | retained_intron |
| 181265 | enst00000527639 | sg00000186470 | btn3a2-210 | 6 | 26370519 | 26373588 | + | mRNA | protein_coding |
| 183439 | enst00000604202 | sg00000186470 | btn3a2-219 | 6 | 26372693 | 26375701 | + | lnc_RNA | retained_intron |
| -189071 | enst00000608931 | sg00000272558 | u91328.2-201 | 6 | 25983812 | 25999167 | - | lnc_RNA | lncrna |
| 193842 | enst00000469230 | sg00000124508 | btn2a2-206 | 6 | 26383096 | 26394874 | + | mRNA | protein_coding |
| 193847 | enst00000490025 | sg00000124508 | btn2a2-213 | 6 | 26383101 | 26392722 | + | mRNA | protein_coding |
| 193848 | enst00000352867 | sg00000124508 | btn2a2-201 | 6 | 26383102 | 26394874 | + | mRNA | protein_coding |
| 193848 | enst00000467485 | sg00000124508 | btn2a2-205 | 6 | 26383102 | 26390908 | + | lnc_RNA | retained_intron |
| 193854 | enst00000356709 | sg00000124508 | btn2a2-202 | 6 | 26383108 | 26394874 | + | mRNA | protein_coding |
| 193859 | enst00000493275 | sg00000124508 | btn2a2-214 | 6 | 26383113 | 26388289 | + | mRNA | protein_coding |
| 193872 | enst00000472507 | sg00000124508 | btn2a2-208 | 6 | 26383126 | 26388249 | + | mRNA | protein_coding |
| 193872 | enst00000482536 | sg00000124508 | btn2a2-209 | 6 | 26383126 | 26393007 | + | mRNA | protein_coding |
| 193872 | enst00000432533 | sg00000124508 | btn2a2-204 | 6 | 26383126 | 26393008 | + | mRNA | protein_coding |
| 193874 | enst00000482842 | sg00000124508 | btn2a2-211 | 6 | 26383128 | 26390137 | + | mRNA | protein_coding |
| 193889 | enst00000482636 | sg00000124508 | btn2a2-210 | 6 | 26383143 | 26385559 | + | lnc_RNA | retained_intron |
| 193937 | enst00000471116 | sg00000124508 | btn2a2-207 | 6 | 26383191 | 26388159 | + | mRNA | nonsense_mediated_decay |
| 193954 | enst00000416795 | sg00000124508 | btn2a2-203 | 6 | 26383208 | 26393992 | + | mRNA | protein_coding |
| 193964 | enst00000494184 | sg00000124508 | btn2a2-215 | 6 | 26383218 | 26385209 | + | mRNA | protein_coding |
| 194179 | enst00000483410 | sg00000124508 | btn2a2-212 | 6 | 26383433 | 26390181 | + | mRNA | protein_coding |
| -195441 | enst00000666742 | sg00000272462 | u91328.1-205 | 6 | 25992797 | 26001771 | + | lnc_RNA | lncrna |
| -195464 | enst00000660716 | sg00000272462 | u91328.1-208 | 6 | 25992774 | 25998812 | + | lnc_RNA | lncrna |
| -195464 | enst00000658377 | sg00000272462 | u91328.1-207 | 6 | 25992774 | 26001774 | + | lnc_RNA | lncrna |
| -195512 | enst00000656696 | sg00000272462 | u91328.1-203 | 6 | 25992726 | 26000104 | + | lnc_RNA | lncrna |
| -195515 | enst00000670129 | sg00000272462 | u91328.1-202 | 6 | 25992723 | 26001775 | + | lnc_RNA | lncrna |
| -195546 | enst00000656572 | sg00000272462 | u91328.1-210 | 6 | 25992692 | 26000070 | + | lnc_RNA | lncrna |
| -195571 | enst00000653223 | sg00000272462 | u91328.1-206 | 6 | 25992667 | 26001774 | + | lnc_RNA | lncrna |
| -195576 | enst00000606723 | sg00000272462 | u91328.1-201 | 6 | 25992662 | 26001775 | + | lnc_RNA | lncrna |
| -195578 | enst00000658630 | sg00000272462 | u91328.1-204 | 6 | 25992660 | 26000108 | + | lnc_RNA | lncrna |
| -195597 | enst00000658335 | sg00000272462 | u91328.1-209 | 6 | 25992641 | 26000518 | + | lnc_RNA | lncrna |
| 200849 | enst00000495632 | sg00000124508 | btn2a2-216 | 6 | 26390103 | 26393969 | + | mRNA | protein_coding |
| 212983 | enst00000476549 | sg00000026950 | btn3a1-208 | 6 | 26402237 | 26413246 | + | mRNA | protein_coding |
| 212996 | enst00000450085 | sg00000026950 | btn3a1-206 | 6 | 26402250 | 26406180 | + | mRNA | protein_coding |
| 212996 | enst00000425234 | sg00000026950 | btn3a1-204 | 6 | 26402250 | 26412920 | + | mRNA | protein_coding |
| 212996 | enst00000465690 | sg00000026950 | btn3a1-207 | 6 | 26402250 | 26404555 | + | lnc_RNA | retained_intron |
| 213004 | enst00000427334 | sg00000026950 | btn3a1-205 | 6 | 26402258 | 26405953 | + | mRNA | protein_coding |
| 213021 | enst00000506698 | sg00000026950 | btn3a1-210 | 6 | 26402275 | 26406098 | + | mRNA | protein_coding |
| 213021 | enst00000289361 | sg00000026950 | btn3a1-202 | 6 | 26402275 | 26415208 | + | mRNA | protein_coding |
| 213041 | enst00000414912 | sg00000026950 | btn3a1-203 | 6 | 26402295 | 26414073 | + | mRNA | protein_coding |
| 213054 | enst00000082468 | sg00000026950 | btn3a1-201 | 6 | 26402308 | 26415204 | + | lnc_RNA | retained_intron |
| 220291 | enst00000513047 | sg00000026950 | btn3a1-211 | 6 | 26409545 | 26413217 | + | lnc_RNA | retained_intron |
| 220329 | enst00000502361 | sg00000026950 | btn3a1-209 | 6 | 26409583 | 26413002 | + | lnc_RNA | retained_intron |
| -225436 | enst00000357085 | sg00000112343 | trim38-201 | 6 | 25962802 | 25991231 | + | mRNA | protein_coding |
| 232137 | enst00000465856 | sg00000124549 | btn2a3p-203 | 6 | 26421391 | 26430588 | + | lnc_RNA | processed_transcript |
| 232865 | enst00000466808 | sg00000124549 | btn2a3p-204 | 6 | 26422119 | 26432383 | + | lnc_RNA | processed_transcript |
| 232865 | enst00000377662 | sg00000124549 | btn2a3p-201 | 6 | 26422119 | 26431615 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 234298 | enst00000475151 | sg00000124549 | btn2a3p-205 | 6 | 26423552 | 26428671 | + | lnc_RNA | processed_transcript |
| 234476 | enst00000463944 | sg00000124549 | btn2a3p-202 | 6 | 26423730 | 26428031 | + | lnc_RNA | processed_transcript |
| 251218 | enst00000494393 | sg00000111801 | btn3a3-213 | 6 | 26440472 | 26444284 | + | mRNA | protein_coding |
| 251218 | enst00000482451 | sg00000111801 | btn3a3-208 | 6 | 26440472 | 26445707 | + | mRNA | protein_coding |
| 251222 | enst00000471353 | sg00000111801 | btn3a3-204 | 6 | 26440476 | 26445818 | + | mRNA | protein_coding |
| 251234 | enst00000361232 | sg00000111801 | btn3a3-202 | 6 | 26440488 | 26452815 | + | mRNA | protein_coding |
| 251239 | enst00000474790 | sg00000111801 | btn3a3-205 | 6 | 26440493 | 26443939 | + | lnc_RNA | retained_intron |
| 251243 | enst00000487627 | sg00000111801 | btn3a3-211 | 6 | 26440497 | 26444298 | + | mRNA | protein_coding |
| 251243 | enst00000496719 | sg00000111801 | btn3a3-214 | 6 | 26440497 | 26445983 | + | mRNA | protein_coding |
| 251250 | enst00000244519 | sg00000111801 | btn3a3-201 | 6 | 26440504 | 26453415 | + | mRNA | protein_coding |
| 251254 | enst00000480110 | sg00000111801 | btn3a3-207 | 6 | 26440508 | 26453414 | + | lnc_RNA | retained_intron |
| 251256 | enst00000467524 | sg00000111801 | btn3a3-203 | 6 | 26440510 | 26443804 | + | lnc_RNA | retained_intron |
| 251302 | enst00000490254 | sg00000111801 | btn3a3-212 | 6 | 26440556 | 26451917 | + | mRNA | protein_coding |
| 251304 | enst00000487272 | sg00000111801 | btn3a3-210 | 6 | 26440558 | 26448409 | + | mRNA | protein_coding |
| 256284 | enst00000483179 | sg00000111801 | btn3a3-209 | 6 | 26445538 | 26452161 | + | lnc_RNA | retained_intron |
| -257512 | enst00000377850 | sg00000112337 | slc17a2-203 | 6 | 25912763 | 25930726 | - | mRNA | protein_coding |
| -257627 | enst00000360488 | sg00000112337 | slc17a2-202 | 6 | 25912754 | 25930611 | - | mRNA | protein_coding |
| 259983 | enst00000477388 | sg00000111801 | btn3a3-206 | 6 | 26449237 | 26450214 | + | lnc_RNA | retained_intron |
| 260161 | enst00000497681 | sg00000111801 | btn3a3-215 | 6 | 26449415 | 26451915 | + | lnc_RNA | retained_intron |
| -262421 | enst00000265425 | sg00000112337 | slc17a2-201 | 6 | 25913317 | 25925817 | - | mRNA | protein_coding |
| 268650 | enst00000541522 | sg00000112763 | btn2a1-207 | 6 | 26457904 | 26469653 | + | mRNA | protein_coding |
| 268668 | enst00000377600 | sg00000112763 | btn2a1-202 | 6 | 26457922 | 26469637 | + | mRNA | nonsense_mediated_decay |
| 268696 | enst00000493173 | sg00000112763 | btn2a1-206 | 6 | 26457950 | 26463253 | + | mRNA | protein_coding |
| 268701 | enst00000312541 | sg00000112763 | btn2a1-201 | 6 | 26457955 | 26469637 | + | mRNA | protein_coding |
| 268707 | enst00000429381 | sg00000112763 | btn2a1-203 | 6 | 26457961 | 26469637 | + | mRNA | protein_coding |
| 268714 | enst00000469185 | sg00000112763 | btn2a1-204 | 6 | 26457968 | 26476621 | + | mRNA | protein_coding |
| 275973 | enst00000480218 | sg00000112763 | btn2a1-205 | 6 | 26465227 | 26476619 | + | mRNA | protein_coding |
| 288618 | enst00000641935 | sg00000284688 | al121936.2-201 | 6 | 26477872 | 26478533 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -302819 | enst00000614873 | sg00000277410 | h2bp5-201 | 6 | 25885419 | 25885751 | + | pseudogenic_transcript | processed_pseudogene |
| -305843 | enst00000454426 | sg00000242387 | h2ac3p-201 | 6 | 25882026 | 25882395 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| -305952 | enst00000360657 | sg00000124564 | slc17a3-202 | 6 | 25845100 | 25882286 | - | mRNA | protein_coding |
| 311967 | enst00000244513 | sg00000124557 | btn1a1-201 | 6 | 26501221 | 26510422 | + | mRNA | protein_coding |
| 312013 | enst00000613186 | sg00000124557 | btn1a1-202 | 6 | 26501267 | 26509935 | + | mRNA | protein_coding |
| -313995 | enst00000397060 | sg00000124564 | slc17a3-204 | 6 | 25844856 | 25874243 | - | mRNA | protein_coding |
| -314000 | enst00000503922 | sg00000124564 | slc17a3-207 | 6 | 25850178 | 25874238 | - | lnc_RNA | retained_intron |
| -314003 | enst00000506105 | sg00000124564 | slc17a3-209 | 6 | 25849913 | 25874235 | - | mRNA | nonsense_mediated_decay |
| -314026 | enst00000361703 | sg00000124564 | slc17a3-203 | 6 | 25845100 | 25874212 | - | mRNA | protein_coding |
| -319749 | enst00000509714 | sg00000124564 | slc17a3-210 | 6 | 25849814 | 25868489 | - | lnc_RNA | retained_intron |
| -319778 | enst00000308453 | sg00000124564 | slc17a3-201 | 6 | 25850525 | 25868460 | - | lnc_RNA | retained_intron |
| -319783 | enst00000449356 | sg00000124564 | slc17a3-205 | 6 | 25850773 | 25868455 | - | mRNA | nonsense_mediated_decay |
| 330204 | enst00000362419 | sg00000199289 | rnu6-502p-201 | 6 | 26519351 | 26519458 | - | snRNA | snrna |
| 332455 | enst00000411553 | sg00000228223 | hcg11-201 | 6 | 26521709 | 26527404 | + | lnc_RNA | lncrna |
| -338361 | enst00000481949 | sg00000124564 | slc17a3-206 | 6 | 25833066 | 25849877 | - | mRNA | protein_coding |
| -338844 | enst00000505420 | sg00000124564 | slc17a3-208 | 6 | 25841305 | 25849394 | - | mRNA | protein_coding |
| 349112 | enst00000377575 | sg00000182952 | hmgn4-201 | 6 | 26538366 | 26546933 | + | mRNA | protein_coding |
| 349184 | enst00000477243 | sg00000182952 | hmgn4-202 | 6 | 26538438 | 26539949 | + | lnc_RNA | processed_transcript |
| -356186 | enst00000244527 | sg00000124568 | slc17a1-201 | 6 | 25782915 | 25832052 | - | mRNA | protein_coding |
| -356197 | enst00000476801 | sg00000124568 | slc17a1-204 | 6 | 25798583 | 25832041 | - | mRNA | protein_coding |
| -356242 | enst00000377886 | sg00000124568 | slc17a1-202 | 6 | 25783126 | 25831996 | - | mRNA | nonsense_mediated_decay |
| -357681 | enst00000468082 | sg00000124568 | slc17a1-203 | 6 | 25798785 | 25830557 | - | mRNA | protein_coding |
| 380070 | enst00000641660 | sg00000284607 | al121936.1-201 | 6 | 26569324 | 26574698 | + | lnc_RNA | lncrna |
| 407699 | enst00000274849 | sg00000146109 | abt1-201 | 6 | 26596953 | 26600739 | + | mRNA | protein_coding |
| 413479 | enst00000611708 | sg00000275846 | al513548.3-201 | 6 | 26602733 | 26606661 | + | lnc_RNA | lncrna |
| 414210 | enst00000616994 | sg00000275846 | al513548.3-202 | 6 | 26603464 | 26606661 | + | lnc_RNA | lncrna |
| 423855 | enst00000602994 | sg00000271071 | al513548.2-201 | 6 | 26611903 | 26613109 | - | pseudogenic_transcript | processed_pseudogene |
| -426315 | enst00000397076 | sg00000146039 | slc17a4-202 | 6 | 25761923 | 25779500 | + | mRNA | protein_coding |
| -433496 | enst00000377905 | sg00000146039 | slc17a4-201 | 6 | 25754742 | 25781199 | + | mRNA | protein_coding |
| -433539 | enst00000439485 | sg00000146039 | slc17a4-203 | 6 | 25754699 | 25781174 | + | mRNA | protein_coding |
| -455741 | enst00000406683 | sg00000216436 | h2ac2p-201 | 6 | 25732497 | 25732827 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -456147 | enst00000369177 | sg00000178762 | h2bc2p-201 | 6 | 25731782 | 25732091 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -461461 | enst00000274764 | sg00000146047 | h2bc1-201 | 6 | 25726777 | 25727292 | + | mRNA | protein_coding |
| -461711 | enst00000297012 | sg00000164508 | h2ac1-201 | 6 | 25726132 | 25726527 | - | mRNA | protein_coding |
| 462242 | enst00000471278 | sg00000181315 | znf322-205 | 6 | 26636291 | 26651496 | - | mRNA | protein_coding |
| 470431 | enst00000480036 | sg00000181315 | znf322-206 | 6 | 26638476 | 26659685 | - | mRNA | protein_coding |
| 470435 | enst00000461899 | sg00000181315 | znf322-203 | 6 | 26638640 | 26659689 | - | lnc_RNA | processed_transcript |
| 470481 | enst00000465674 | sg00000181315 | znf322-204 | 6 | 26638627 | 26659735 | - | lnc_RNA | processed_transcript |
| 470492 | enst00000415922 | sg00000181315 | znf322-201 | 6 | 26634383 | 26659746 | - | mRNA | protein_coding |
| 470498 | enst00000456172 | sg00000181315 | znf322-202 | 6 | 26634393 | 26659752 | - | mRNA | protein_coding |
| 470498 | enst00000607204 | sg00000181315 | znf322-207 | 6 | 26634393 | 26659752 | - | mRNA | protein_coding |
| 470498 | enst00000622479 | sg00000181315 | znf322-208 | 6 | 26634393 | 26659752 | - | mRNA | protein_coding |
| 487749 | enst00000647995 | sg00000285571 | al513548.4-201 | 6 | 26677003 | 26683211 | + | lnc_RNA | lncrna |
| 496987 | enst00000562904 | sg00000261584 | al513548.1-201 | 6 | 26686241 | 26687964 | + | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc