SpatialDE.SpatialPatterns

class SpatialDE.SpatialPatterns(converged, status, labels, pattern_probabilities, patterns, niter, elbo_trace)

Results of automated expression histology.

Parameters:

• converged (bool) – Whether the optimization converged.

• status (str) – Status of the optimization.

• labels (ndarray) – The estimated region labels.

• pattern_probabilities (ndarray) – N_obs x N_patterns array with the estimated region probabilities for each observation.

• niter (int) – Number of iterations for the optimization.

• elbo_trace (ndarray) – ELBO values at each iteration.

• patterns (ndarray) –