SpatialDE.read_spaceranger

SpatialDE.read_spaceranger(spaceranger_out_dir, read_images=True)

Read 10x SpaceRanger output.

Parameters:

• spaceranger_out_dir (str) – Path to the directory with SpaceRanger output.

• read_images (bool) – Whether to also read images into memory.

Return type:

AnnData

Returns:

An annotated data matrix.